IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2136	 66.35	0	2149158..2150102	-	314	55379078	hom	rrnAC2408	-	homoserine dehydrogenase
2137	 65.17	0	2150099..2150632	-	177	55379079	-	rrnAC2410	-	hypothetical protein
2138	 59.66	0	2150712..2151125	-	137	55379080	-	rrnAC2411	-	hypothetical protein
2139	 65.55	0	2151421..2152137	+	238	55379081	-	rrnAC2412	-	putative peptidase
2140	 62.78	0	2152334..2154520	-	728	55379082	fusA	rrnAC2413	-	elongation factor EF-2
2141	 62.38	0	2154682..2155917	+	411	55379083	metB	rrnAC2414	-	cystathionine gamma-synthase
2142	 65.79	0	2155984..2156778	+	264	55379084	-	rrnAC2415	-	hypothetical protein
2143	 61.90	0	2156932..2160075	+	1047	55379085	-	rrnAC2416	-	putative light and redox sensing histidine kinase
2144	 69.76	+1	2160091..2160801	-	236	55379086	cbiQ2	rrnAC2417	-	cobalt transport protein
2145	 67.38	+1	2160795..2161499	-	234	55379087	cbiO	rrnAC2418	-	cobalt transport ATP-binding protein
2146	 66.67	0	2161496..2162077	-	193	55379088	bioY	rrnAC2420	-	dethiobiotin synthesis protein
2147	 68.26	+1	2162152..2163534	-	460	55379089	-	rrnAC2421	-	hypothetical protein
2148	 62.16	0	2163584..2164204	-	206	55379090	rps7P	rrnAC2423	-	30S ribosomal protein S7P
2149	 61.77	0	2164207..2164635	-	142	55379091	rps12P	rrnAC2424	-	30S ribosomal protein S12P
2150	 62.48	0	2165107..2167494	+	795	55379092	htr18	rrnAC2425	-	MCP domain-containing signal transducer
2151	 65.49	0	2167552..2167977	-	141	55379093	nusA	rrnAC2426	-	transcription elongation factor NusA-like protein
2152	 63.89	0	2167977..2169164	-	395	55379094	rpoC	rrnAC2427	-	DNA-directed RNA polymerase subunit A''
2153	 64.16	0	2169167..2172076	-	969	55379095	rpoA	rrnAC2428	-	DNA-directed RNA polymerase subunit alpha
2154	 63.77	0	2172073..2173899	-	608	55379096	rpoB	rrnAC2429	-	DNA-directed RNA polymerase subunit B'
2155	 62.01	0	2173901..2175466	-	521	55379097	rpoB	rrnAC2430	-	DNA-directed RNA polymerase subunit beta''
2156	 55.26	-1	2175466..2175693	-	75	55379098	rpoH	rrnAC2432	-	DNA-directed RNA polymerase subunit H
2157	 62.84	0	2176646..2177299	+	217	55379099	-	rrnAC2433	-	hypothetical protein
2158	 59.41	0	2177415..2177717	+	100	55379100	-	rrnAC2434	-	hypothetical protein
2159	 65.85	0	2177786..2178274	+	162	55379101	-	rrnAC2435	-	putative phosphoesterase
2160	 67.31	+1	2178385..2179158	+	257	55379102	-	rrnAC2436	-	F420-0--gamma-glutamyl ligase
2161	 66.97	+1	2179145..2180122	+	325	55379103	mer1	rrnAC2437	-	methylenetetrahydromethanopterin reductase
2162	 62.87	0	2180396..2181739	-	447	55379104	tnaA	rrnAC2439	-	tryptophanase
2163	 64.62	0	2181806..2182585	+	259	55379105	scm	rrnAC2440	-	24-sterol C-methyltransferase
2164	 64.81	0	2182669..2182938	+	89	55379106	-	rrnAC2441	-	hypothetical protein
2165	 64.69	0	2183132..2184091	+	319	55379107	moxR3	rrnAC2442	-	methanol dehydrogenase regulatory protein
2166	 68.21	+1	2184088..2185062	+	324	55379108	-	rrnAC2443	-	hypothetical protein
2167	 67.74	+1	2185059..2187293	+	744	55379109	-	rrnAC2444	-	hypothetical protein
2168	 58.16	-1	2187338..2187631	+	97	55379110	sui1	rrnAC2445	-	translation initiation factor Sui1
2169	 64.85	0	2187880..2190192	+	770	55379111	-	rrnAC2446	-	putative glycyl aminopeptidase
2170	 61.98	0	2190305..2191114	+	269	55379112	-	rrnAC2448	-	hypothetical protein
2171	 69.48	+1	2191407..2192792	+	461	55379113	thiD	rrnAC2449	-	phosphomethylpyrimidine kinase
2172	 65.09	0	2192868..2193503	+	211	55379114	trxA9	rrnAC2450	-	thioredoxin
2173	 66.99	+1	2193538..2194464	-	308	55379115	serA5	rrnAC2451	-	phosphoglycerate dehydrogenase
2174	 64.97	0	2194527..2194703	-	58	55379116	-	rrnAC2452	-	hypothetical protein
2175	 65.21	0	2194869..2195963	+	364	55379117	-	rrnAC2453	-	hypothetical protein
2176	 66.89	+1	2195968..2196405	+	145	55379118	usp10	rrnAC2455	-	putative universal stress protein
2177	 66.28	0	2196433..2196951	-	172	55379119	-	rrnAC2456	-	hypothetical protein
2178	 61.07	0	2197026..2197793	-	255	55379120	-	rrnAC2457	-	hypothetical protein
2179	 60.34	0	2197856..2198203	-	115	55379121	trxA1	rrnAC2458	-	thioredoxin
2180	 64.53	0	2198281..2198841	-	186	55379122	maa	rrnAC2459	-	maltose O-acetyltransferase
2181	 64.93	0	2198883..2201009	+	708	55379123	-	rrnAC2460	-	hypothetical protein
2182	 62.60	0	2201042..2202172	+	376	55379124	ark2	rrnAC2461	-	adaptive-response sensory-kinase
2183	 68.70	+1	2202184..2202429	-	81	55379125	-	rrnAC2462	-	hypothetical protein
2184	 64.48	0	2202468..2202878	-	136	55379126	scp2	rrnAC2463	-	sterol carrier protein
2185	 65.84	0	2202996..2203718	-	240	55379127	livF-6	rrnAC2464	-	branched-chain amino acid ABC transporter ATP-binding protein
2186	 63.84	0	2203715..2204527	-	270	55379128	livG-6	rrnAC2465	-	branched-chain amino acid ABC transporter ATP-binding protein
2187	 63.87	0	2204520..2205629	-	369	55379129	livM-5	rrnAC2466	-	branched-chain amino acid ABC transporter permease protein
2188	 62.85	0	2205626..2206543	-	305	55379130	livH-6	rrnAC2468	-	branched chain amino acid transporter permease protein
2189	 61.04	0	2206574..2207995	-	473	55379131	-	rrnAC2469	-	hypothetical protein
2190	 62.76	0	2208013..2208984	+	323	55379132	prr	rrnAC2470	-	proline racemase
2191	 61.29	0	2209057..2209893	+	278	55379133	yusM	rrnAC2471	-	proline dehydrogenase
2192	 61.92	0	2209895..2210611	-	238	55379134	boa-8	rrnAC2472	-	bacterio-opsin activator
2193	 63.67	0	2210755..2212323	+	522	55379135	aldY2	rrnAC2473	-	aldehyde dehydrogenase
2194	 62.63	0	2212297..2212395	-	32	55379136	-	rrnAC2475	-	hypothetical protein
2195	 58.69	0	2212504..2212854	+	116	55379137	eif1A1	rrnAC2474	-	translation initiation factor IF-1A
2196	 64.60	0	2213250..2213831	+	193	55379138	prk2	rrnAC2476	-	protein kinase
2197	 62.29	0	2214108..2215157	+	349	55379139	htlD	rrnAC2477	-	protein kinase-like
2198	 62.66	0	2215253..2215801	+	182	55379140	-	rrnAC2479	-	putative RNA-processing protein
2199	 64.40	0	2215931..2216371	+	146	55379141	act	rrnAC2480	-	acyl-CoA thioester hydrolase
2200	 54.17	-2	2216439..2216702	-	87	55379142	-	rrnAC2481	-	hypothetical protein
2201	 56.67	-1	2216695..2216934	-	79	55379143	-	rrnAC2482	-	hypothetical protein
2202	 67.73	+1	2217708..2218364	-	218	55379144	-	rrnAC2483	-	hypothetical protein
2203	 67.26	+1	2218425..2219099	+	224	55379145	ech3	rrnAC2484	-	enoyl-CoA hydratase
2204	 63.71	0	2219138..2219914	+	258	55379146	-	rrnAC2485	-	hypothetical protein
2205	 64.51	0	2219935..2220768	-	277	55379147	nadE1	rrnAC2486	-	NH(3)-dependent NAD(+) synthetase
2206	 64.98	0	2221262..2222269	+	335	55379148	rfcC2	rrnAC2487	-	replication factor C small subunit 2
2207	 59.87	0	2222455..2222763	+	102	55379149	rps24e	rrnAC2488	-	30S ribosomal protein S24e
2208	 63.70	0	2222764..2222898	+	44	55379150	rps27AE	rrnAC2489	-	30S ribosomal protein S27ae
2209	 68.49	+1	2222908..2224554	+	548	55379151	gcp	rrnAC2490	-	O-sialoglycoprotein endopeptidase/protein kinase
2210	 59.06	0	2224770..2225045	+	91	55379152	-	rrnAC2492	-	hypothetical protein
2211	 66.52	0	2225159..2225830	+	223	55379153	ham1	rrnAC2493	-	Ham1 protein
2212	 64.49	0	2226133..2226729	+	198	55379154	yqjQ	rrnAC2494	-	short chain dehydrogenase/reductase family oxidoreductase
2213	 62.67	0	2226862..2228562	+	566	55379155	htr14	rrnAC2495	-	MCP domain-containing signal transducer
2214	 64.99	0	2228576..2229052	-	158	55379156	-	rrnAC2496	-	hypothetical protein
2215	 62.04	0	2229045..2229152	-	35	55379157	-	rrnAC2497	-	hypothetical protein
2216	 61.86	0	2229438..2230103	-	221	55379158	trkA6	rrnAC2498	-	TRK potassium uptake system protein
2217	 62.54	0	2230161..2231372	-	403	55379159	-	rrnAC2499	-	hypothetical protein
2218	 65.71	0	2231752..2232687	+	311	55379160	-	rrnAC2500	-	metallo-beta-lactamase-like
2219	 66.57	0	2232730..2233803	+	357	55379161	gfo5	rrnAC2501	-	oxidoreductase
2220	 69.12	+1	2233825..2234436	-	203	55379162	araC	rrnAC2503	-	AraC family transcriptional regulator
2221	 67.58	+1	2234545..2235423	+	292	55379163	phzC	rrnAC2502	-	phenazine biosynthesis-like protein
2222	 65.05	0	2235483..2235854	+	123	55379164	lgl	rrnAC2504	-	putative lactoyglutathione lyase
2223	 63.69	0	2235888..2237366	-	492	55379165	-	rrnAC2505	-	putative polysaccharide biosynthesis protein
2224	 63.18	0	2237626..2237883	-	85	55379166	-	rrnAC2506	-	hypothetical protein
2225	 64.29	0	2237929..2238138	-	69	55379167	-	rrnAC2507	-	hypothetical protein
2226	 63.61	0	2238392..2239603	-	403	55379168	ilvA2	rrnAC2508	-	threonine dehydratase
2227	 63.00	0	2239891..2241525	+	544	55379169	trk	rrnAC2510	-	trk active potasium channel
2228	 63.79	0	2241892..2243037	-	381	55379170	citZ	rrnAC2511	-	citrate synthase II
2229	 65.52	0	2243272..2244495	+	407	55379171	pchB	rrnAC2512	-	potassium channel-related protein
2230	 65.74	0	2244502..2244717	-	71	55379172	-	rrnAC2513	-	hypothetical protein
2231	 65.10	0	2244853..2245809	+	318	55379173	-	rrnAC2514	-	hypothetical protein
2232	 66.67	0	2246063..2247133	+	356	55379174	thrC4	rrnAC2515	-	threonine synthase
2233	 62.25	0	2247130..2247333	-	67	55379175	-	rrnAC2516	-	hypothetical protein
2234	 59.42	0	2247390..2247596	-	68	55379176	-	rrnAC2517	-	hypothetical protein
2235	 66.83	0	2247856..2249076	-	406	55379177	-	rrnAC2518	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.