IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2100	 65.82	0	2108616..2109209	+	197	55379042	hisH1	rrnAC2369	-	glutamine amidotransferase subunit PdxT
2101	 56.90	-1	2109246..2109542	+	98	55379043	hisI1	rrnAC2371	-	phosphoribosyl-ATP pyrophosphatase
2102	 62.38	0	2109606..2111540	+	644	55379044	htlD	rrnAC2372	-	HTR-like protein
2103	 62.89	0	2111564..2111881	-	105	55379045	-	rrnAC2373	-	hypothetical protein
2104	 64.96	0	2111976..2112971	+	331	55379046	gbp4	rrnAC2374	-	GTP-binding protein
2105	 66.39	0	2113134..2113844	-	236	55379047	-	rrnAC2375	-	hypothetical protein
2106	 64.83	0	2113906..2114829	-	307	55379048	-	rrnAC2377	-	hypothetical protein
2107	 61.17	0	2115334..2115951	+	205	55379049	engB	rrnAC2378	-	GTP-binding protein
2108	 60.29	0	2116114..2117337	+	407	55379050	-	rrnAC2379	-	hypothetical protein
2109	 63.91	0	2117671..2119518	+	615	55379051	-	rrnAC2380	-	putative serine/threonine phosphatase
2110	 61.02	0	2119515..2120843	+	442	55379052	-	rrnAC2381	-	hypothetical protein
2111	 60.70	0	2121198..2122220	-	340	55379053	tnp	rrnAC2382	-	phage integrase
2112	 56.67	-1	2122646..2122945	+	99	55379054	phrH3	rrnAC2383	-	PhiH1 repressor-like
2113	 60.76	0	2122953..2123189	-	78	55379055	-	rrnAC2384	-	hypothetical protein
2114	 59.26	0	2124334..2125386	-	350	55379056	cdc6e	rrnAC2385	-	ORC / cell division control protein 6
2115	 40.27	-2	2126270..2127004	-	244	55379057	-	rrnAC2386	-	hypothetical protein
2116	 51.39	-2	2127411..2127770	+	119	55379058	-	rrnAC2387	-	hypothetical protein
2117	 54.65	-1	2128312..2128569	-	85	55379059	-	rrnAC2389	-	hypothetical protein
2118	 47.69	-2	2128950..2130461	+	503	55379060	-	rrnAC2390	-	hypothetical protein
2119	 49.64	-2	2130467..2131153	-	228	55379061	-	rrnAC2391	-	hypothetical protein
2120	 48.69	-2	2131282..2132916	+	544	55379062	-	rrnAC2392	-	hypothetical protein
2121	 50.80	-2	2132919..2133479	+	186	55379063	-	rrnAC2393	-	hypothetical protein
2122	 58.04	-1	2133578..2134852	+	424	55379064	tnp	rrnAC2394	-	putative ISH8 transposase
2123	 45.99	-2	2135176..2135649	+	157	55379065	-	rrnAC2395	-	hypothetical protein
2124	 56.08	-1	2137394..2137582	-	62	55379066	-	rrnAC2396	-	hypothetical protein
2125	 60.19	0	2137705..2138136	+	143	55379067	-	rrnAC2397	-	hypothetical protein
2126	 67.10	+1	2138142..2138372	+	76	55379068	-	rrnAC2398	-	hypothetical protein
2127	 55.33	-1	2138540..2140171	+	543	55379069	-	rrnAC2399	-	hypothetical protein
2128	 63.41	0	2140179..2140730	+	183	55379070	-	rrnAC2400	-	hypothetical protein
2129	 62.89	0	2140727..2141521	+	264	55379071	-	rrnAC2401	-	hypothetical protein
2130	 58.43	-1	2141514..2142023	+	169	55379072	-	rrnAC2402	-	hypothetical protein
2131	 57.37	-1	2142115..2142684	+	189	55379073	-	rrnAC2403	-	hypothetical protein
2132	 62.03	0	2144200..2145816	-	538	55379074	-	rrnAC2404	-	hypothetical protein
2133	 64.42	0	2146818..2147129	-	103	55379075	rps10p	rrnAC2405	-	30S ribosomal protein S10P
2134	 62.80	0	2147133..2148398	-	421	55379076	eef1a	rrnAC2406	-	elongation factor 1-alpha
2135	 55.64	-1	2148655..2149044	-	129	55379077	-	rrnAC2407	-	hypothetical protein
2136	 66.35	0	2149158..2150102	-	314	55379078	hom	rrnAC2408	-	homoserine dehydrogenase
2137	 65.17	0	2150099..2150632	-	177	55379079	-	rrnAC2410	-	hypothetical protein
2138	 59.66	0	2150712..2151125	-	137	55379080	-	rrnAC2411	-	hypothetical protein
2139	 65.55	0	2151421..2152137	+	238	55379081	-	rrnAC2412	-	putative peptidase
2140	 62.78	0	2152334..2154520	-	728	55379082	fusA	rrnAC2413	-	elongation factor EF-2
2141	 62.38	0	2154682..2155917	+	411	55379083	metB	rrnAC2414	-	cystathionine gamma-synthase
2142	 65.79	0	2155984..2156778	+	264	55379084	-	rrnAC2415	-	hypothetical protein
2143	 61.90	0	2156932..2160075	+	1047	55379085	-	rrnAC2416	-	putative light and redox sensing histidine kinase
2144	 69.76	+1	2160091..2160801	-	236	55379086	cbiQ2	rrnAC2417	-	cobalt transport protein
2145	 67.38	+1	2160795..2161499	-	234	55379087	cbiO	rrnAC2418	-	cobalt transport ATP-binding protein
2146	 66.67	0	2161496..2162077	-	193	55379088	bioY	rrnAC2420	-	dethiobiotin synthesis protein
2147	 68.26	+1	2162152..2163534	-	460	55379089	-	rrnAC2421	-	hypothetical protein
2148	 62.16	0	2163584..2164204	-	206	55379090	rps7P	rrnAC2423	-	30S ribosomal protein S7P
2149	 61.77	0	2164207..2164635	-	142	55379091	rps12P	rrnAC2424	-	30S ribosomal protein S12P
2150	 62.48	0	2165107..2167494	+	795	55379092	htr18	rrnAC2425	-	MCP domain-containing signal transducer
2151	 65.49	0	2167552..2167977	-	141	55379093	nusA	rrnAC2426	-	transcription elongation factor NusA-like protein
2152	 63.89	0	2167977..2169164	-	395	55379094	rpoC	rrnAC2427	-	DNA-directed RNA polymerase subunit A''
2153	 64.16	0	2169167..2172076	-	969	55379095	rpoA	rrnAC2428	-	DNA-directed RNA polymerase subunit alpha
2154	 63.77	0	2172073..2173899	-	608	55379096	rpoB	rrnAC2429	-	DNA-directed RNA polymerase subunit B'
2155	 62.01	0	2173901..2175466	-	521	55379097	rpoB	rrnAC2430	-	DNA-directed RNA polymerase subunit beta''
2156	 55.26	-1	2175466..2175693	-	75	55379098	rpoH	rrnAC2432	-	DNA-directed RNA polymerase subunit H
2157	 62.84	0	2176646..2177299	+	217	55379099	-	rrnAC2433	-	hypothetical protein
2158	 59.41	0	2177415..2177717	+	100	55379100	-	rrnAC2434	-	hypothetical protein
2159	 65.85	0	2177786..2178274	+	162	55379101	-	rrnAC2435	-	putative phosphoesterase
2160	 67.31	+1	2178385..2179158	+	257	55379102	-	rrnAC2436	-	F420-0--gamma-glutamyl ligase
2161	 66.97	+1	2179145..2180122	+	325	55379103	mer1	rrnAC2437	-	methylenetetrahydromethanopterin reductase
2162	 62.87	0	2180396..2181739	-	447	55379104	tnaA	rrnAC2439	-	tryptophanase
2163	 64.62	0	2181806..2182585	+	259	55379105	scm	rrnAC2440	-	24-sterol C-methyltransferase
2164	 64.81	0	2182669..2182938	+	89	55379106	-	rrnAC2441	-	hypothetical protein
2165	 64.69	0	2183132..2184091	+	319	55379107	moxR3	rrnAC2442	-	methanol dehydrogenase regulatory protein
2166	 68.21	+1	2184088..2185062	+	324	55379108	-	rrnAC2443	-	hypothetical protein
2167	 67.74	+1	2185059..2187293	+	744	55379109	-	rrnAC2444	-	hypothetical protein
2168	 58.16	-1	2187338..2187631	+	97	55379110	sui1	rrnAC2445	-	translation initiation factor Sui1
2169	 64.85	0	2187880..2190192	+	770	55379111	-	rrnAC2446	-	putative glycyl aminopeptidase
2170	 61.98	0	2190305..2191114	+	269	55379112	-	rrnAC2448	-	hypothetical protein
2171	 69.48	+1	2191407..2192792	+	461	55379113	thiD	rrnAC2449	-	phosphomethylpyrimidine kinase
2172	 65.09	0	2192868..2193503	+	211	55379114	trxA9	rrnAC2450	-	thioredoxin
2173	 66.99	+1	2193538..2194464	-	308	55379115	serA5	rrnAC2451	-	phosphoglycerate dehydrogenase
2174	 64.97	0	2194527..2194703	-	58	55379116	-	rrnAC2452	-	hypothetical protein
2175	 65.21	0	2194869..2195963	+	364	55379117	-	rrnAC2453	-	hypothetical protein
2176	 66.89	+1	2195968..2196405	+	145	55379118	usp10	rrnAC2455	-	putative universal stress protein
2177	 66.28	0	2196433..2196951	-	172	55379119	-	rrnAC2456	-	hypothetical protein
2178	 61.07	0	2197026..2197793	-	255	55379120	-	rrnAC2457	-	hypothetical protein
2179	 60.34	0	2197856..2198203	-	115	55379121	trxA1	rrnAC2458	-	thioredoxin
2180	 64.53	0	2198281..2198841	-	186	55379122	maa	rrnAC2459	-	maltose O-acetyltransferase
2181	 64.93	0	2198883..2201009	+	708	55379123	-	rrnAC2460	-	hypothetical protein
2182	 62.60	0	2201042..2202172	+	376	55379124	ark2	rrnAC2461	-	adaptive-response sensory-kinase
2183	 68.70	+1	2202184..2202429	-	81	55379125	-	rrnAC2462	-	hypothetical protein
2184	 64.48	0	2202468..2202878	-	136	55379126	scp2	rrnAC2463	-	sterol carrier protein
2185	 65.84	0	2202996..2203718	-	240	55379127	livF-6	rrnAC2464	-	branched-chain amino acid ABC transporter ATP-binding protein
2186	 63.84	0	2203715..2204527	-	270	55379128	livG-6	rrnAC2465	-	branched-chain amino acid ABC transporter ATP-binding protein
2187	 63.87	0	2204520..2205629	-	369	55379129	livM-5	rrnAC2466	-	branched-chain amino acid ABC transporter permease protein
2188	 62.85	0	2205626..2206543	-	305	55379130	livH-6	rrnAC2468	-	branched chain amino acid transporter permease protein
2189	 61.04	0	2206574..2207995	-	473	55379131	-	rrnAC2469	-	hypothetical protein
2190	 62.76	0	2208013..2208984	+	323	55379132	prr	rrnAC2470	-	proline racemase
2191	 61.29	0	2209057..2209893	+	278	55379133	yusM	rrnAC2471	-	proline dehydrogenase
2192	 61.92	0	2209895..2210611	-	238	55379134	boa-8	rrnAC2472	-	bacterio-opsin activator
2193	 63.67	0	2210755..2212323	+	522	55379135	aldY2	rrnAC2473	-	aldehyde dehydrogenase
2194	 62.63	0	2212297..2212395	-	32	55379136	-	rrnAC2475	-	hypothetical protein
2195	 58.69	0	2212504..2212854	+	116	55379137	eif1A1	rrnAC2474	-	translation initiation factor IF-1A
2196	 64.60	0	2213250..2213831	+	193	55379138	prk2	rrnAC2476	-	protein kinase
2197	 62.29	0	2214108..2215157	+	349	55379139	htlD	rrnAC2477	-	protein kinase-like
2198	 62.66	0	2215253..2215801	+	182	55379140	-	rrnAC2479	-	putative RNA-processing protein
2199	 64.40	0	2215931..2216371	+	146	55379141	act	rrnAC2480	-	acyl-CoA thioester hydrolase
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.