IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2050	 65.92	0	2059778..2060044	+	88	55378992	-	rrnAC2312	-	hypothetical protein
2051	 66.44	0	2060050..2060493	-	147	55378993	-	rrnAC2313	-	hypothetical protein
2052	 62.82	0	2060621..2062543	-	640	55378994	trp3	rrnAC2314	-	ABC transport protein
2053	 65.31	0	2062583..2063170	-	195	55378995	-	rrnAC2315	-	hypothetical protein
2054	 58.33	-1	2063746..2063865	+	39	55378996	-	rrnAC2316	-	hypothetical protein
2055	 64.60	0	2064377..2064667	+	96	55378997	-	rrnAC2317	-	hypothetical protein
2056	 57.72	-1	2064879..2066924	+	681	55378998	mcm1	rrnAC2318	-	MCM / cell division control protein 21
2057	 43.82	-2	2068626..2069159	+	177	55378999	-	rrnAC2319	-	hypothetical protein
2058	 52.08	-2	2069430..2070293	-	287	55379000	-	rrnAC2320	-	hypothetical protein
2059	 55.33	-1	2070444..2071043	+	199	55379001	boa	rrnAC2321	-	bacterio-opsin activator-like protein
2060	 52.68	-2	2071051..2071572	-	173	55379002	-	rrnAC2322	-	hypothetical protein
2061	 57.47	-1	2071751..2072359	-	202	55379003	-	rrnAC2323	-	hypothetical protein
2062	 46.13	-2	2073356..2073730	+	124	55379004	-	rrnAC2324	-	hypothetical protein
2063	 51.62	-2	2073736..2075616	+	626	55379005	repC	rrnAC2325	-	replication factor C
2064	 48.00	-2	2075686..2075910	-	74	55379006	-	rrnAC2326	-	hypothetical protein
2065	 59.44	0	2076803..2076982	-	59	55379007	-	rrnAC2327	-	hypothetical protein
2066	 60.32	0	2077024..2077212	+	62	55379008	-	rrnAC2328	-	hypothetical protein
2067	 61.54	0	2077225..2078472	-	415	55379009	tnp	rrnAC2329	-	phage integrase
2068	 63.86	0	2078665..2079234	+	189	55379010	-	rrnAC2331	-	hypothetical protein
2069	 60.98	0	2079339..2079584	+	81	55379011	-	rrnAC2332	-	hypothetical protein
2070	 59.20	0	2079871..2080593	-	240	55379013	hspC	rrnAC2333	-	small heat shock protein
2071	 65.75	0	2080592..2083657	+	1021	55379012	glcD2	rrnAC2334	-	putative oxidoreductase
2072	 65.90	0	2083649..2084173	-	174	55379014	-	rrnAC2335	-	hypothetical protein
2073	 62.85	0	2084226..2085455	-	409	55379015	-	rrnAC2337	-	histidine kinase
2074	 57.44	-1	2085646..2085840	+	64	55379016	cspD4	rrnAC2338	-	cold shock protein
2075	 58.97	0	2085843..2086037	+	64	55379017	cspD3	rrnAC2339	-	cold shock protein
2076	 65.86	0	2086165..2086905	-	246	55379018	-	rrnAC2340	-	hypothetical protein
2077	 60.75	0	2087013..2087198	-	61	55379019	-	rrnAC2341	-	hypothetical protein
2078	 64.15	0	2087240..2087398	-	52	55379020	-	rrnAC2342	-	hypothetical protein
2079	 66.25	0	2087461..2088180	+	239	55379021	rfbA	rrnAC2343	-	glucose-1-phosphate thymidylyltransferase
2080	 68.35	+1	2088260..2088853	+	197	55379022	-	rrnAC2345	-	hypothetical protein
2081	 62.04	0	2088850..2089929	-	359	55379023	malG	rrnAC2346	-	maltose ABC transporter permease protein
2082	 61.68	0	2089929..2090891	-	320	55379024	malFG-6	rrnAC2347	-	ABC-type sugar transport systems permease components
2083	 64.87	0	2090901..2092181	-	426	55379025	malE1	rrnAC2349	-	maltose ABC transporter maltose-binding protein
2084	 67.34	+1	2092393..2094480	+	695	55379026	amy	rrnAC2350	-	alpha amylase
2085	 64.65	0	2094552..2095739	+	395	55379027	ugpC1	rrnAC2352	-	sugar ABC transporter ATP-binding protein
2086	 67.95	+1	2095847..2097865	-	672	55379028	cga-2	rrnAC2353	-	glucan 14-alpha-glucosidase
2087	 64.29	0	2098039..2099091	+	350	55379029	-	rrnAC2354	-	transcription regulator
2088	 59.92	0	2099123..2099626	-	167	55379030	-	rrnAC2355	-	hypothetical protein
2089	 62.19	0	2099705..2100955	-	416	55379032	gst1	rrnAC2356	-	glutathione S-transferase
2090	 62.17	0	2100921..2101454	+	177	55379031	rpl10e	rrnAC2357	-	50S ribosomal protein L10e
2091	 64.66	0	2101641..2101889	+	82	55379033	-	rrnAC2358	-	hypothetical protein
2092	 62.78	0	2101947..2102126	-	59	55379034	usp16	rrnAC2359	-	universal stress protein
2093	 66.90	+1	2102555..2103418	+	287	55379035	rimK	rrnAC2360	-	ribosomal protein S6 modification protein
2094	 62.02	0	2103470..2103856	-	128	55379036	hsp20b	rrnAC2361	-	putative heat shock protein
2095	 63.78	0	2104058..2105062	+	334	55379037	gapA	rrnAC2363	-	glyceraldehyde 3-phosphate dehydrogenase
2096	 63.09	0	2105367..2106569	+	400	55379038	pgk	rrnAC2364	-	phosphoglycerate kinase
2097	 65.31	0	2106566..2106712	-	48	55379039	-	rrnAC2365	-	hypothetical protein
2098	 62.00	0	2106841..2107419	+	192	55379040	ribC	rrnAC2367	-	riboflavin synthase subunit alpha
2099	 60.87	0	2107416..2108450	-	344	55379041	-	rrnAC2368	-	hypothetical protein
2100	 65.82	0	2108616..2109209	+	197	55379042	hisH1	rrnAC2369	-	glutamine amidotransferase subunit PdxT
2101	 56.90	-1	2109246..2109542	+	98	55379043	hisI1	rrnAC2371	-	phosphoribosyl-ATP pyrophosphatase
2102	 62.38	0	2109606..2111540	+	644	55379044	htlD	rrnAC2372	-	HTR-like protein
2103	 62.89	0	2111564..2111881	-	105	55379045	-	rrnAC2373	-	hypothetical protein
2104	 64.96	0	2111976..2112971	+	331	55379046	gbp4	rrnAC2374	-	GTP-binding protein
2105	 66.39	0	2113134..2113844	-	236	55379047	-	rrnAC2375	-	hypothetical protein
2106	 64.83	0	2113906..2114829	-	307	55379048	-	rrnAC2377	-	hypothetical protein
2107	 61.17	0	2115334..2115951	+	205	55379049	engB	rrnAC2378	-	GTP-binding protein
2108	 60.29	0	2116114..2117337	+	407	55379050	-	rrnAC2379	-	hypothetical protein
2109	 63.91	0	2117671..2119518	+	615	55379051	-	rrnAC2380	-	putative serine/threonine phosphatase
2110	 61.02	0	2119515..2120843	+	442	55379052	-	rrnAC2381	-	hypothetical protein
2111	 60.70	0	2121198..2122220	-	340	55379053	tnp	rrnAC2382	-	phage integrase
2112	 56.67	-1	2122646..2122945	+	99	55379054	phrH3	rrnAC2383	-	PhiH1 repressor-like
2113	 60.76	0	2122953..2123189	-	78	55379055	-	rrnAC2384	-	hypothetical protein
2114	 59.26	0	2124334..2125386	-	350	55379056	cdc6e	rrnAC2385	-	ORC / cell division control protein 6
2115	 40.27	-2	2126270..2127004	-	244	55379057	-	rrnAC2386	-	hypothetical protein
2116	 51.39	-2	2127411..2127770	+	119	55379058	-	rrnAC2387	-	hypothetical protein
2117	 54.65	-1	2128312..2128569	-	85	55379059	-	rrnAC2389	-	hypothetical protein
2118	 47.69	-2	2128950..2130461	+	503	55379060	-	rrnAC2390	-	hypothetical protein
2119	 49.64	-2	2130467..2131153	-	228	55379061	-	rrnAC2391	-	hypothetical protein
2120	 48.69	-2	2131282..2132916	+	544	55379062	-	rrnAC2392	-	hypothetical protein
2121	 50.80	-2	2132919..2133479	+	186	55379063	-	rrnAC2393	-	hypothetical protein
2122	 58.04	-1	2133578..2134852	+	424	55379064	tnp	rrnAC2394	-	putative ISH8 transposase
2123	 45.99	-2	2135176..2135649	+	157	55379065	-	rrnAC2395	-	hypothetical protein
2124	 56.08	-1	2137394..2137582	-	62	55379066	-	rrnAC2396	-	hypothetical protein
2125	 60.19	0	2137705..2138136	+	143	55379067	-	rrnAC2397	-	hypothetical protein
2126	 67.10	+1	2138142..2138372	+	76	55379068	-	rrnAC2398	-	hypothetical protein
2127	 55.33	-1	2138540..2140171	+	543	55379069	-	rrnAC2399	-	hypothetical protein
2128	 63.41	0	2140179..2140730	+	183	55379070	-	rrnAC2400	-	hypothetical protein
2129	 62.89	0	2140727..2141521	+	264	55379071	-	rrnAC2401	-	hypothetical protein
2130	 58.43	-1	2141514..2142023	+	169	55379072	-	rrnAC2402	-	hypothetical protein
2131	 57.37	-1	2142115..2142684	+	189	55379073	-	rrnAC2403	-	hypothetical protein
2132	 62.03	0	2144200..2145816	-	538	55379074	-	rrnAC2404	-	hypothetical protein
2133	 64.42	0	2146818..2147129	-	103	55379075	rps10p	rrnAC2405	-	30S ribosomal protein S10P
2134	 62.80	0	2147133..2148398	-	421	55379076	eef1a	rrnAC2406	-	elongation factor 1-alpha
2135	 55.64	-1	2148655..2149044	-	129	55379077	-	rrnAC2407	-	hypothetical protein
2136	 66.35	0	2149158..2150102	-	314	55379078	hom	rrnAC2408	-	homoserine dehydrogenase
2137	 65.17	0	2150099..2150632	-	177	55379079	-	rrnAC2410	-	hypothetical protein
2138	 59.66	0	2150712..2151125	-	137	55379080	-	rrnAC2411	-	hypothetical protein
2139	 65.55	0	2151421..2152137	+	238	55379081	-	rrnAC2412	-	putative peptidase
2140	 62.78	0	2152334..2154520	-	728	55379082	fusA	rrnAC2413	-	elongation factor EF-2
2141	 62.38	0	2154682..2155917	+	411	55379083	metB	rrnAC2414	-	cystathionine gamma-synthase
2142	 65.79	0	2155984..2156778	+	264	55379084	-	rrnAC2415	-	hypothetical protein
2143	 61.90	0	2156932..2160075	+	1047	55379085	-	rrnAC2416	-	putative light and redox sensing histidine kinase
2144	 69.76	+1	2160091..2160801	-	236	55379086	cbiQ2	rrnAC2417	-	cobalt transport protein
2145	 67.38	+1	2160795..2161499	-	234	55379087	cbiO	rrnAC2418	-	cobalt transport ATP-binding protein
2146	 66.67	0	2161496..2162077	-	193	55379088	bioY	rrnAC2420	-	dethiobiotin synthesis protein
2147	 68.26	+1	2162152..2163534	-	460	55379089	-	rrnAC2421	-	hypothetical protein
2148	 62.16	0	2163584..2164204	-	206	55379090	rps7P	rrnAC2423	-	30S ribosomal protein S7P
2149	 61.77	0	2164207..2164635	-	142	55379091	rps12P	rrnAC2424	-	30S ribosomal protein S12P
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.