IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2003	 63.00	0	2010268..2010921	-	217	55378945	-	rrnAC2259	-	hypothetical protein
2004	 61.35	0	2011032..2011445	+	137	55378946	-	rrnAC2260	-	hypothetical protein
2005	 63.45	0	2011633..2012658	-	341	55378947	pepB1	rrnAC2261	-	aminopeptidase
2006	 63.76	0	2012779..2013843	+	354	55378948	gapB	rrnAC2262	-	glyceraldehyde-3-phosphate dehydrogenase
2007	 61.79	0	2013847..2014338	-	163	55378949	-	rrnAC2263	-	hypothetical protein
2008	 62.67	0	2014702..2015376	-	224	55378950	-	rrnAC2265	-	hypothetical protein
2009	 63.88	0	2015473..2016585	+	370	55378951	-	rrnAC2266	-	hypothetical protein
2010	 62.54	0	2016600..2018441	-	613	55378952	uvrD	rrnAC2267	-	repair helicase
2011	 56.67	-1	2018523..2018822	-	99	55378953	-	rrnAC2268	-	hypothetical protein
2012	 62.25	0	2019334..2019831	+	165	55378954	gvpE	rrnAC2270	-	ParR family transcriptional regulator
2013	 64.92	0	2020487..2021059	-	190	55378955	-	rrnAC2271	-	hypothetical protein
2014	 65.09	0	2021235..2023517	+	760	55378956	norB	rrnAC2272	-	cytochrome B subunit of nitric oxide reductase
2015	 62.75	0	2023600..2025360	-	586	55378957	-	rrnAC2273	-	hypothetical protein
2016	 61.15	0	2025618..2026016	-	132	55378958	-	rrnAC2275	-	hypothetical protein
2017	 64.65	0	2026072..2027061	-	329	55378959	dox	rrnAC2277	-	dioxgenase
2018	 63.00	0	2027127..2027726	+	199	55378960	coaD1	rrnAC2278	-	phosphopantetheine adenylyltransferase
2019	 67.93	+1	2028577..2029368	-	263	55378961	cbiQ1	rrnAC2280	-	cobalt transport protein
2020	 69.81	+1	2029372..2029689	-	105	55378962	-	rrnAC2281	-	hypothetical protein
2021	 64.95	0	2029686..2030324	-	212	55378963	cbiM	rrnAC2282	-	cobalamin biosynthesis protein CbiM
2022	 58.15	-1	2030445..2030855	+	136	55378964	copG1	rrnAC2283	-	CopG family transcriptional regulator
2023	 60.12	0	2031007..2031999	-	330	55378965	tnp	rrnAC2284	-	phage integrase/site-specific recombinase
2024	 50.46	-2	2032459..2032785	+	108	55378966	phrH2	rrnAC2285	-	PhiH1 repressor-like
2025	 40.87	-2	2033166..2034107	-	313	55378967	-	rrnAC2286	-	hypothetical protein
2026	 44.19	-2	2034463..2034996	-	177	55378968	-	rrnAC2287	-	hypothetical protein
2027	 39.09	-2	2035259..2036074	+	271	55378969	-	rrnAC2288	-	hypothetical protein
2028	 60.57	0	2036112..2036570	+	152	55378970	-	rrnAC2289	-	hypothetical protein
2029	 67.53	+1	2036576..2036806	+	76	55378971	-	rrnAC2290	-	hypothetical protein
2030	 57.24	-1	2037982..2038596	+	204	55378972	-	rrnAC2291	-	hypothetical protein
2031	 63.95	0	2038604..2039155	+	183	55378973	-	rrnAC2292	-	hypothetical protein
2032	 62.39	0	2039152..2039946	+	264	55378974	-	rrnAC2293	-	hypothetical protein
2033	 59.10	0	2039939..2041114	+	391	55378975	-	rrnAC2294	-	hypothetical protein
2034	 37.29	-2	2041665..2043458	-	597	55378976	-	rrnAC2295	-	hypothetical protein
2035	 62.19	0	2043713..2045476	-	587	55378977	-	rrnAC2296	-	hypothetical protein
2036	 59.72	0	2045479..2045622	-	47	55378978	-	rrnAC2297	-	hypothetical protein
2037	 65.31	0	2046640..2048040	+	466	55378979	cca	rrnAC2298	-	tRNA CCA-pyrophosphorylase
2038	 63.49	0	2048019..2049026	-	335	55378980	aup	rrnAC2299	-	acetoin utilization protein
2039	 66.67	0	2049027..2049464	-	145	55378981	hpyA	rrnAC2301	-	histone A1
2040	 65.99	0	2049520..2050986	-	488	55378982	rpa	rrnAC2302	-	replication factor A
2041	 57.33	-1	2051179..2051328	-	49	55378983	-	rrnAC2303	-	hypothetical protein
2042	 61.90	0	2052489..2052614	+	41	55378984	-	rrnAC2304	-	hypothetical protein
2043	 66.28	0	2052639..2053412	-	257	55378985	-	rrnAC2305	-	hypothetical protein
2044	 62.36	0	2053487..2053834	+	115	55378986	-	rrnAC2306	-	hypothetical protein
2045	 60.34	0	2053909..2055015	+	368	55378987	-	rrnAC2307	-	hypothetical protein
2046	 63.53	0	2055121..2055567	+	148	55378988	-	rrnAC2308	-	hypothetical protein
2047	 61.67	0	2055755..2056294	-	179	55378989	-	rrnAC2309	-	hypothetical protein
2048	 63.24	0	2056397..2057212	+	271	55378990	coxB4	rrnAC2310	-	cytochrome C oxidase subunit II
2049	 63.74	0	2057209..2059773	+	854	55378991	coxA2	rrnAC2311	-	cytochrome c oxidase subunit I
2050	 65.92	0	2059778..2060044	+	88	55378992	-	rrnAC2312	-	hypothetical protein
2051	 66.44	0	2060050..2060493	-	147	55378993	-	rrnAC2313	-	hypothetical protein
2052	 62.82	0	2060621..2062543	-	640	55378994	trp3	rrnAC2314	-	ABC transport protein
2053	 65.31	0	2062583..2063170	-	195	55378995	-	rrnAC2315	-	hypothetical protein
2054	 58.33	-1	2063746..2063865	+	39	55378996	-	rrnAC2316	-	hypothetical protein
2055	 64.60	0	2064377..2064667	+	96	55378997	-	rrnAC2317	-	hypothetical protein
2056	 57.72	-1	2064879..2066924	+	681	55378998	mcm1	rrnAC2318	-	MCM / cell division control protein 21
2057	 43.82	-2	2068626..2069159	+	177	55378999	-	rrnAC2319	-	hypothetical protein
2058	 52.08	-2	2069430..2070293	-	287	55379000	-	rrnAC2320	-	hypothetical protein
2059	 55.33	-1	2070444..2071043	+	199	55379001	boa	rrnAC2321	-	bacterio-opsin activator-like protein
2060	 52.68	-2	2071051..2071572	-	173	55379002	-	rrnAC2322	-	hypothetical protein
2061	 57.47	-1	2071751..2072359	-	202	55379003	-	rrnAC2323	-	hypothetical protein
2062	 46.13	-2	2073356..2073730	+	124	55379004	-	rrnAC2324	-	hypothetical protein
2063	 51.62	-2	2073736..2075616	+	626	55379005	repC	rrnAC2325	-	replication factor C
2064	 48.00	-2	2075686..2075910	-	74	55379006	-	rrnAC2326	-	hypothetical protein
2065	 59.44	0	2076803..2076982	-	59	55379007	-	rrnAC2327	-	hypothetical protein
2066	 60.32	0	2077024..2077212	+	62	55379008	-	rrnAC2328	-	hypothetical protein
2067	 61.54	0	2077225..2078472	-	415	55379009	tnp	rrnAC2329	-	phage integrase
2068	 63.86	0	2078665..2079234	+	189	55379010	-	rrnAC2331	-	hypothetical protein
2069	 60.98	0	2079339..2079584	+	81	55379011	-	rrnAC2332	-	hypothetical protein
2070	 59.20	0	2079871..2080593	-	240	55379013	hspC	rrnAC2333	-	small heat shock protein
2071	 65.75	0	2080592..2083657	+	1021	55379012	glcD2	rrnAC2334	-	putative oxidoreductase
2072	 65.90	0	2083649..2084173	-	174	55379014	-	rrnAC2335	-	hypothetical protein
2073	 62.85	0	2084226..2085455	-	409	55379015	-	rrnAC2337	-	histidine kinase
2074	 57.44	-1	2085646..2085840	+	64	55379016	cspD4	rrnAC2338	-	cold shock protein
2075	 58.97	0	2085843..2086037	+	64	55379017	cspD3	rrnAC2339	-	cold shock protein
2076	 65.86	0	2086165..2086905	-	246	55379018	-	rrnAC2340	-	hypothetical protein
2077	 60.75	0	2087013..2087198	-	61	55379019	-	rrnAC2341	-	hypothetical protein
2078	 64.15	0	2087240..2087398	-	52	55379020	-	rrnAC2342	-	hypothetical protein
2079	 66.25	0	2087461..2088180	+	239	55379021	rfbA	rrnAC2343	-	glucose-1-phosphate thymidylyltransferase
2080	 68.35	+1	2088260..2088853	+	197	55379022	-	rrnAC2345	-	hypothetical protein
2081	 62.04	0	2088850..2089929	-	359	55379023	malG	rrnAC2346	-	maltose ABC transporter permease protein
2082	 61.68	0	2089929..2090891	-	320	55379024	malFG-6	rrnAC2347	-	ABC-type sugar transport systems permease components
2083	 64.87	0	2090901..2092181	-	426	55379025	malE1	rrnAC2349	-	maltose ABC transporter maltose-binding protein
2084	 67.34	+1	2092393..2094480	+	695	55379026	amy	rrnAC2350	-	alpha amylase
2085	 64.65	0	2094552..2095739	+	395	55379027	ugpC1	rrnAC2352	-	sugar ABC transporter ATP-binding protein
2086	 67.95	+1	2095847..2097865	-	672	55379028	cga-2	rrnAC2353	-	glucan 14-alpha-glucosidase
2087	 64.29	0	2098039..2099091	+	350	55379029	-	rrnAC2354	-	transcription regulator
2088	 59.92	0	2099123..2099626	-	167	55379030	-	rrnAC2355	-	hypothetical protein
2089	 62.19	0	2099705..2100955	-	416	55379032	gst1	rrnAC2356	-	glutathione S-transferase
2090	 62.17	0	2100921..2101454	+	177	55379031	rpl10e	rrnAC2357	-	50S ribosomal protein L10e
2091	 64.66	0	2101641..2101889	+	82	55379033	-	rrnAC2358	-	hypothetical protein
2092	 62.78	0	2101947..2102126	-	59	55379034	usp16	rrnAC2359	-	universal stress protein
2093	 66.90	+1	2102555..2103418	+	287	55379035	rimK	rrnAC2360	-	ribosomal protein S6 modification protein
2094	 62.02	0	2103470..2103856	-	128	55379036	hsp20b	rrnAC2361	-	putative heat shock protein
2095	 63.78	0	2104058..2105062	+	334	55379037	gapA	rrnAC2363	-	glyceraldehyde 3-phosphate dehydrogenase
2096	 63.09	0	2105367..2106569	+	400	55379038	pgk	rrnAC2364	-	phosphoglycerate kinase
2097	 65.31	0	2106566..2106712	-	48	55379039	-	rrnAC2365	-	hypothetical protein
2098	 62.00	0	2106841..2107419	+	192	55379040	ribC	rrnAC2367	-	riboflavin synthase subunit alpha
2099	 60.87	0	2107416..2108450	-	344	55379041	-	rrnAC2368	-	hypothetical protein
2100	 65.82	0	2108616..2109209	+	197	55379042	hisH1	rrnAC2369	-	glutamine amidotransferase subunit PdxT
2101	 56.90	-1	2109246..2109542	+	98	55379043	hisI1	rrnAC2371	-	phosphoribosyl-ATP pyrophosphatase
2102	 62.38	0	2109606..2111540	+	644	55379044	htlD	rrnAC2372	-	HTR-like protein
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.