IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1942	 61.87	0	1953598..1954035	-	145	55378884	flaF	rrnAC2190	-	flagellar protein F
1943	 63.29	0	1954019..1955704	-	561	55378885	fapE1	rrnAC2191	-	flagella-related protein E
1944	 58.81	0	1955946..1956467	-	173	55378886	cheD	rrnAC2192	-	chemoreceptor glutamine deamidase CheD
1945	 58.46	-1	1956467..1957684	-	405	55378887	cheA1	rrnAC2193	-	CheA histidine kinase
1946	 53.89	-2	1957685..1958044	-	119	55378888	cheY	rrnAC2194	-	chemotaxis protein CheY
1947	 57.45	-1	1958193..1958756	-	187	55378889	-	rrnAC2195	-	hypothetical protein
1948	 61.06	0	1958989..1959897	-	302	55378890	-	rrnAC2197	-	hypothetical protein
1949	 52.97	-2	1960025..1961389	-	454	55378891	flaB	rrnAC2198	-	flagellin B precursor
1950	 55.43	-1	1961640..1961915	-	91	55378892	-	rrnAC2199	-	hypothetical protein
1951	 55.36	-1	1961999..1962334	-	111	55378893	-	rrnAC2200	-	hypothetical protein
1952	 55.51	-1	1962491..1963216	-	241	55378894	kaiC1	rrnAC2202	-	circadian regulator
1953	 59.54	0	1963305..1963739	-	144	55378895	cheW1	rrnAC2203	-	chemotaxis protein CheW
1954	 63.24	0	1963910..1965019	+	369	55378896	cheB	rrnAC2204	-	protein-glutamate methylesterase
1955	 62.39	0	1965022..1967010	+	662	55378897	cheA3	rrnAC2205	-	chemotaxis protein CheA
1956	 60.86	0	1967007..1967816	+	269	55378898	cheR	rrnAC2206	-	chemotaxis protein methyltransferase CheR
1957	 65.45	0	1967823..1969055	+	410	55378899	cpcE2	rrnAC2207	-	phycocyanin alpha phycocyanobilin lyase-like
1958	 62.38	0	1969115..1969978	+	287	55378900	-	rrnAC2209	-	hypothetical protein
1959	 61.80	0	1970061..1971335	+	424	55378901	htlD	rrnAC2211	-	HTR-like protein
1960	 65.64	0	1971405..1971794	+	129	55378902	rps6E	rrnAC2212	-	30S ribosomal protein S6e
1961	 60.64	0	1972329..1973207	+	292	55378903	-	rrnAC2213	-	hypothetical protein
1962	 63.59	0	1973229..1973651	-	140	55378904	dcd1	rrnAC2215	-	deoxycytidine triphosphate deaminase
1963	 65.74	0	1973756..1974187	+	143	55378905	-	rrnAC2214	-	hypothetical protein
1964	 68.04	+1	1974189..1974626	-	145	55378906	-	rrnAC2216	-	hypothetical protein
1965	 66.21	0	1974706..1975797	-	363	55378907	recJ4	rrnAC2217	-	RecJ-like exonuclease
1966	 65.24	0	1975882..1976859	-	325	55378908	phoR	rrnAC2219	-	PhoR protein-like
1967	 67.96	+1	1977594..1978058	-	154	55378910	usp5	rrnAC2220	-	universal stress protein
1968	 62.87	0	1978039..1978617	+	192	55378909	-	rrnAC2221	-	hypothetical protein
1969	 62.07	0	1978614..1979135	-	173	55378911	-	rrnAC2222	-	acetyltransferase
1970	 60.47	0	1979132..1979518	-	128	55378912	usp2	rrnAC2223	-	universal stress protein
1971	 64.89	0	1979619..1980350	+	243	55378913	-	rrnAC2224	-	hypothetical protein
1972	 64.79	0	1980362..1980787	+	141	55378914	-	rrnAC2225	-	hypothetical protein
1973	 65.70	0	1980821..1981339	-	172	55378915	-	rrnAC2226	-	hypothetical protein
1974	 63.90	0	1981426..1984098	+	890	55378916	dppF	rrnAC2227	-	dipeptide ABC transporter ATP-binding
1975	 62.38	0	1984196..1985923	+	575	55378917	dppD	rrnAC2228	-	dipeptide ABC transporter ATP-binding
1976	 61.59	0	1985944..1987026	+	360	55378918	dppB1	rrnAC2229	-	dipeptide ABC transporter permease
1977	 67.20	+1	1987023..1987952	+	309	55378919	oppC1	rrnAC2230	-	oligopeptide transport system permease protein OppC
1978	 67.76	+1	1987952..1988317	+	121	55378920	-	rrnAC2231	-	hypothetical protein
1979	 65.54	0	1988309..1989640	-	443	55378921	pyrC	rrnAC2232	-	dihydroorotase
1980	 67.69	+1	1989665..1990348	-	227	55378922	-	rrnAC2235	-	hypothetical protein
1981	 67.49	+1	1990574..1991428	+	284	55378923	-	rrnAC2234	-	hypothetical protein
1982	 62.30	0	1991498..1992070	-	190	55378924	entB2	rrnAC2236	-	isochorismatase
1983	 64.33	0	1992214..1993671	+	485	55378925	-	rrnAC2237	-	hypothetical protein
1984	 64.90	0	1993664..1995022	+	452	55378926	-	rrnAC2239	-	hypothetical protein
1985	 53.73	-2	1995242..1995496	+	84	55378927	-	rrnAC2240	-	hypothetical protein
1986	 66.75	0	1995629..1996792	+	387	55378928	-	rrnAC2241	-	nicotinate phosphoribosyltransferase
1987	 63.51	0	1996827..1997111	+	94	55378929	-	rrnAC2242	-	hypothetical protein
1988	 64.00	0	1997183..1997482	+	99	55378930	-	rrnAC2243	-	hypothetical protein
1989	 65.50	0	1997490..1998344	-	284	55378931	-	rrnAC2244	-	zinc transporter
1990	 65.06	0	1998553..1999422	-	289	55378932	-	rrnAC2245	-	M50 family metallopeptidase
1991	 65.19	0	1999785..2000531	+	248	55378933	-	rrnAC2246	-	hypothetical protein
1992	 69.99	+1	2000556..2001998	-	480	55378934	eif2BA	rrnAC2247	-	translation initiation factor eIF-2B alpha subunit
1993	 66.21	0	2001928..2003031	-	367	55378935	csd2	rrnAC2248	-	cysteine desulfurase
1994	 58.25	-1	2003236..2003853	-	205	55378936	-	rrnAC2249	-	hypothetical protein
1995	 60.30	0	2003898..2005859	-	653	55378937	-	rrnAC2250	-	hypothetical protein
1996	 58.33	-1	2006160..2006507	+	115	55378938	-	rrnAC2251	-	hypothetical protein
1997	 61.98	0	2006510..2006893	+	127	55378939	crcB1	rrnAC2252	-	integral membrane protein
1998	 63.61	0	2006893..2007252	+	119	55378940	crcB2	rrnAC2253	-	integral membrane protein
1999	 66.20	0	2007249..2008331	-	360	55378941	-	rrnAC2254	-	hypothetical protein
2000	 61.30	0	2008407..2008853	+	148	55378942	-	rrnAC2255	-	hypothetical protein
2001	 66.67	0	2008850..2009581	-	243	55378943	pcm2	rrnAC2256	-	protein-L-isoaspartate O-methyltransferase 2
2002	 64.83	0	2009643..2010077	-	144	55378944	pcm1	rrnAC2258	-	protein-L-isoaspartate O-methyltransferase 1
2003	 63.00	0	2010268..2010921	-	217	55378945	-	rrnAC2259	-	hypothetical protein
2004	 61.35	0	2011032..2011445	+	137	55378946	-	rrnAC2260	-	hypothetical protein
2005	 63.45	0	2011633..2012658	-	341	55378947	pepB1	rrnAC2261	-	aminopeptidase
2006	 63.76	0	2012779..2013843	+	354	55378948	gapB	rrnAC2262	-	glyceraldehyde-3-phosphate dehydrogenase
2007	 61.79	0	2013847..2014338	-	163	55378949	-	rrnAC2263	-	hypothetical protein
2008	 62.67	0	2014702..2015376	-	224	55378950	-	rrnAC2265	-	hypothetical protein
2009	 63.88	0	2015473..2016585	+	370	55378951	-	rrnAC2266	-	hypothetical protein
2010	 62.54	0	2016600..2018441	-	613	55378952	uvrD	rrnAC2267	-	repair helicase
2011	 56.67	-1	2018523..2018822	-	99	55378953	-	rrnAC2268	-	hypothetical protein
2012	 62.25	0	2019334..2019831	+	165	55378954	gvpE	rrnAC2270	-	ParR family transcriptional regulator
2013	 64.92	0	2020487..2021059	-	190	55378955	-	rrnAC2271	-	hypothetical protein
2014	 65.09	0	2021235..2023517	+	760	55378956	norB	rrnAC2272	-	cytochrome B subunit of nitric oxide reductase
2015	 62.75	0	2023600..2025360	-	586	55378957	-	rrnAC2273	-	hypothetical protein
2016	 61.15	0	2025618..2026016	-	132	55378958	-	rrnAC2275	-	hypothetical protein
2017	 64.65	0	2026072..2027061	-	329	55378959	dox	rrnAC2277	-	dioxgenase
2018	 63.00	0	2027127..2027726	+	199	55378960	coaD1	rrnAC2278	-	phosphopantetheine adenylyltransferase
2019	 67.93	+1	2028577..2029368	-	263	55378961	cbiQ1	rrnAC2280	-	cobalt transport protein
2020	 69.81	+1	2029372..2029689	-	105	55378962	-	rrnAC2281	-	hypothetical protein
2021	 64.95	0	2029686..2030324	-	212	55378963	cbiM	rrnAC2282	-	cobalamin biosynthesis protein CbiM
2022	 58.15	-1	2030445..2030855	+	136	55378964	copG1	rrnAC2283	-	CopG family transcriptional regulator
2023	 60.12	0	2031007..2031999	-	330	55378965	tnp	rrnAC2284	-	phage integrase/site-specific recombinase
2024	 50.46	-2	2032459..2032785	+	108	55378966	phrH2	rrnAC2285	-	PhiH1 repressor-like
2025	 40.87	-2	2033166..2034107	-	313	55378967	-	rrnAC2286	-	hypothetical protein
2026	 44.19	-2	2034463..2034996	-	177	55378968	-	rrnAC2287	-	hypothetical protein
2027	 39.09	-2	2035259..2036074	+	271	55378969	-	rrnAC2288	-	hypothetical protein
2028	 60.57	0	2036112..2036570	+	152	55378970	-	rrnAC2289	-	hypothetical protein
2029	 67.53	+1	2036576..2036806	+	76	55378971	-	rrnAC2290	-	hypothetical protein
2030	 57.24	-1	2037982..2038596	+	204	55378972	-	rrnAC2291	-	hypothetical protein
2031	 63.95	0	2038604..2039155	+	183	55378973	-	rrnAC2292	-	hypothetical protein
2032	 62.39	0	2039152..2039946	+	264	55378974	-	rrnAC2293	-	hypothetical protein
2033	 59.10	0	2039939..2041114	+	391	55378975	-	rrnAC2294	-	hypothetical protein
2034	 37.29	-2	2041665..2043458	-	597	55378976	-	rrnAC2295	-	hypothetical protein
2035	 62.19	0	2043713..2045476	-	587	55378977	-	rrnAC2296	-	hypothetical protein
2036	 59.72	0	2045479..2045622	-	47	55378978	-	rrnAC2297	-	hypothetical protein
2037	 65.31	0	2046640..2048040	+	466	55378979	cca	rrnAC2298	-	tRNA CCA-pyrophosphorylase
2038	 63.49	0	2048019..2049026	-	335	55378980	aup	rrnAC2299	-	acetoin utilization protein
2039	 66.67	0	2049027..2049464	-	145	55378981	hpyA	rrnAC2301	-	histone A1
2040	 65.99	0	2049520..2050986	-	488	55378982	rpa	rrnAC2302	-	replication factor A
2041	 57.33	-1	2051179..2051328	-	49	55378983	-	rrnAC2303	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.