IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
142	 66.96	+1	134479..135162	-	227	55377084	-	rrnAC0160	-	hypothetical protein
143	 62.70	0	135237..135740	-	167	55377085	-	rrnAC0161	-	putative transcriptional regulator
144	 62.33	0	136046..136876	+	276	55377086	-	rrnAC0163	-	hypothetical protein
145	 63.87	0	136971..137756	+	261	55377087	-	rrnAC0165	-	hypothetical protein
146	 63.78	0	137879..139333	+	484	55377088	proS	rrnAC0166	-	prolyl-tRNA synthetase
147	 64.05	0	139491..140447	-	318	55377089	-	rrnAC0167	-	putative patatin-like phospholipase
148	 56.41	-1	140905..141333	+	142	55377090	-	rrnAC0168	-	hypothetical protein
149	 64.07	0	141488..146035	+	1515	55377091	gltB	rrnAC0169	-	glutamate synthase large subunit
150	 60.91	0	146216..147187	+	323	55377092	-	rrnAC0170	-	hypothetical protein
151	 65.83	0	147255..148334	+	359	55377093	-	rrnAC0171	-	hypothetical protein
152	 63.40	0	148338..149408	-	356	55377094	-	rrnAC0172	-	transcription regulator
153	 64.76	0	149592..152156	-	854	55377095	bglX-1	rrnAC0173	-	beta-glucosidase
154	 65.72	0	152308..153366	+	352	55377096	gldA	rrnAC0175	-	glycerol-1-phosphate dehydrogenase [NAD(P)]
155	 65.96	0	153363..153926	-	187	55377097	-	rrnAC0176	-	hypothetical protein
156	 65.97	0	153999..155723	-	574	55377098	pop	rrnAC0178	-	prolyl oligopeptidase family protein
157	 64.21	0	155890..156948	+	352	55377099	rfbU	rrnAC0179	-	LPS biosynthesis protein
158	 64.11	0	156997..159150	-	717	55377100	nhaC5	rrnAC0180	-	Na+/H+ antiporter
159	 65.68	0	159292..160704	+	470	55377101	rad25-1	rrnAC0181	-	DNA repair helicase
160	 67.82	+1	160717..161325	-	202	55377102	ubiE2	rrnAC0182	-	ubiquinone/menaquinone biosynthesis methyltransferase UbiE
161	 59.37	0	161427..162920	-	497	55377103	htr	rrnAC0183	-	heme-based aerotactic transducer HemAT
162	 66.05	0	163058..165502	-	814	55377104	folP	rrnAC0184	-	dihydropteroate synthase
163	 65.55	0	165617..166333	-	238	55377105	-	rrnAC0185	-	hypothetical protein
164	 61.90	0	166949..167935	-	328	55377106	-	rrnAC0187	-	putative transporter
165	 53.76	-2	167925..168017	-	30	55377107	-	rrnAC0188	-	hypothetical protein
166	 64.20	0	168089..169669	-	526	55377108	purH	rrnAC0189	-	bifunctional purine biosynthesis protein PurH
167	 67.03	+1	169815..170369	+	184	55377109	-	rrnAC0190	-	hypothetical protein
168	 62.73	0	170616..171683	+	355	55377110	adh3	rrnAC0191	-	zinc-binding dehydrogenase
169	 64.50	0	171814..173196	+	460	55377111	purB	rrnAC0192	-	adenylosuccinate lyase
170	 64.91	0	173290..174597	+	435	55377112	yfmO2	rrnAC0194	-	multidrug resistance protein-like
171	 64.03	0	174690..175334	+	214	55377113	-	rrnAC0195	-	hypothetical protein
172	 66.49	0	175360..176487	-	375	55377114	argE	rrnAC0196	-	succinyl-diaminopimelate desuccinylase
173	 68.20	+1	176487..177791	-	434	55377115	odc	rrnAC0198	-	ornithine decarboxylase
174	 57.73	-1	177927..178463	-	178	55377116	-	rrnAC0199	-	putative transcriptional regulator
175	 64.49	0	178528..178803	-	91	55377117	-	rrnAC0200	-	hypothetical protein
176	 57.96	-1	178901..180427	-	508	55377118	aldY2	rrnAC0201	-	aldehyde dehydrogenase
177	 69.16	+1	180912..182033	+	373	55377119	-	rrnAC0202	-	hypothetical protein
178	 65.37	0	182062..182679	-	205	55377120	-	rrnAC0203	-	hypothetical protein
179	 65.22	0	182873..183703	-	276	55377122	dapD	rrnAC0204	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
180	 62.77	0	183702..187136	+	1144	55377121	aglA2	rrnAC0205	-	alpha-glucosidase
181	 68.00	+1	187517..188266	-	249	55377123	dapB	rrnAC0206	-	dihydrodipicolinate reductase
182	 63.30	0	188263..189183	-	306	55377124	dapA	rrnAC0207	-	dihydrodipicolinate synthase
183	 59.24	0	190053..190550	+	165	55377125	-	rrnAC0208	-	hypothetical protein
184	 68.80	+1	191470..191937	+	155	55377126	-	rrnAC0210	-	putative RNA binding protein
185	 62.76	0	192057..192542	+	161	55377127	-	rrnAC0211	-	hypothetical protein
186	 64.33	0	192543..193268	-	241	55377128	-	rrnAC0213	-	hypothetical protein
187	 63.61	0	193640..194032	+	130	55377129	nac	rrnAC0214	-	nascent polypeptide-associated complex protein
188	 67.24	+1	194235..194756	+	173	55377130	pimT	rrnAC0215	-	L-isoaspartyl protein carboxyl methyltransferase
189	 60.81	0	194820..195041	+	73	55377131	-	rrnAC0216	-	hypothetical protein
190	 66.67	0	195405..195761	-	118	55377132	-	rrnAC0217	-	hypothetical protein
191	 61.47	0	196026..196352	-	108	55377133	rpoM	rrnAC0218	-	DNA-directed RNA-polymerase subunit M
192	 64.93	0	196469..197563	-	364	55377134	-	rrnAC0219	-	hypothetical protein
193	 65.97	0	197697..197984	+	95	55377135	-	rrnAC0220	-	hypothetical protein
194	 54.10	-2	198162..198344	+	60	55377136	-	rrnAC0221	-	hypothetical protein
195	 61.40	0	198691..198861	-	56	55377137	-	rrnAC0222	-	hypothetical protein
196	 64.20	0	198931..199701	-	256	55377138	camH3	rrnAC0223	-	creatinine amidohydrolase
197	 61.72	0	199782..201479	-	565	55377139	aglA1	rrnAC0224	-	alpha-glucosidase
198	 66.11	0	201578..202660	-	360	55377140	-	rrnAC0225	-	hypothetical protein
199	 63.12	0	202791..203750	-	319	55377141	iunH2	rrnAC0226	-	inosine-uridine preferring nucleoside hydrolase
200	 63.51	0	203867..204880	-	337	55377142	ocd3	rrnAC0227	-	ornithine cyclodeaminase
201	 58.97	0	204959..205231	-	90	55377143	-	rrnAC0228	-	hypothetical protein
202	 61.33	0	205228..206781	-	517	55377144	nhaC1	rrnAC0229	-	Na+/H+ antiporter
203	 61.75	0	207112..207864	+	250	55377145	arcR	rrnAC0230	-	transcription regulator
204	 61.58	0	207970..208716	-	248	55377146	-	rrnAC0231	-	transcription regulator
205	 65.61	0	208837..209880	+	347	55377147	-	rrnAC0232	-	hypothetical protein
206	 65.37	0	209877..210956	+	359	55377148	ykfB2	rrnAC0233	-	chloromuconate cycloisomerase
207	 63.90	0	211000..212118	-	372	55377149	-	rrnAC0234	-	hypothetical protein
208	 64.87	0	212293..213129	+	278	55377150	-	rrnAC0236	-	hypothetical protein
209	 66.15	0	213152..214687	-	511	55377151	otsA	rrnAC0237	-	trehalose-6-phosphate synthase
210	 67.39	+1	214942..215634	+	230	55377152	-	rrnAC0238	-	hypothetical protein
211	 66.22	0	215650..216759	-	369	55377153	mer2	rrnAC0239	-	N5N10-methylenetetrahydromethanopterin reductase
212	 59.41	0	216861..217232	+	123	55377154	qacE	rrnAC0240	-	quaternary ammonium compound-resistance protein
213	 62.29	0	217314..218021	+	235	55377155	hadL	rrnAC0241	-	2-haloalkanoic acid dehalogenase
214	 62.54	0	218375..219028	-	217	55377156	trkA7	rrnAC0243	-	TRK potassium uptake system protein
215	 59.18	0	219240..220694	+	484	55377157	cat	rrnAC0244	-	cationic amino acid transporter
216	 60.24	0	220698..221351	+	217	55377158	trkA4	rrnAC0245	-	Trk potassium uptake system protein
217	 65.37	0	221487..222644	-	385	55377159	folP3	rrnAC0246	-	dihydropteroate synthase
218	 60.36	0	222747..223952	+	401	55377160	-	rrnAC0247	-	putative light-sensing histidine kinase
219	 62.16	0	224157..225065	+	302	55377161	-	rrnAC0248	-	phosphotransferase
220	 65.68	0	225062..226078	-	338	55377162	pfk3	rrnAC0249	-	phosphofructokinase
221	 61.38	0	226109..227602	+	497	55377163	-	rrnAC0250	-	hypothetical protein
222	 61.84	0	227599..228282	+	227	55377164	yvrO-2	rrnAC0251	-	ABC transporter ATP-binding protein
223	 61.99	0	228272..229405	+	377	55377165	abcS-2	rrnAC0252	-	ABC transporter permease protein
224	 62.18	0	229402..229914	-	170	55377166	-	rrnAC0253	-	hypothetical protein
225	 62.29	0	230663..231736	-	357	55377167	metE	rrnAC0254	-	methionine synthase
226	 64.26	0	231739..232737	-	332	55377168	-	rrnAC0255	-	methionine synthase vitamin-B12 independent
227	 69.38	+1	232800..233426	-	208	55377169	hemK	rrnAC0256	-	protporphyrinogen oxidase
228	 66.78	0	233428..234285	-	285	55377170	ksgA	rrnAC0257	-	dimethyladenosine transferase
229	 60.03	0	234366..234938	-	190	55377171	-	rrnAC0258	-	hypothetical protein
230	 60.50	0	235114..235470	-	118	55377172	rpb4	rrnAC0259	-	RNA polymerase Rpb4
231	 62.54	0	235467..235757	-	96	55377173	rpl21E	rrnAC0260	-	50S ribosomal protein L21e
232	 61.67	0	235871..236170	-	99	55377174	ef1B	rrnAC0261	-	elongation factor 1-beta
233	 61.11	0	236140..236319	-	59	55377175	-	rrnAC0262	-	hypothetical protein
234	 64.17	0	236392..236991	-	199	55377176	-	rrnAC0263	-	hypothetical protein
235	 66.21	0	236988..237860	-	290	55377177	hbd-1	rrnAC0264	-	3-hydroxyacyl-CoA dehydrogenase
236	 65.33	0	238004..238972	+	322	55377178	apl	rrnAC0265	-	AP-endonuclease/AP-lyase
237	 65.97	0	239065..239778	+	237	55377179	-	rrnAC0266	-	hypothetical protein
238	 61.68	0	239810..240190	-	126	55377180	imd1	rrnAC0267	-	inosine monophosphate dehydrogenase
239	 65.79	0	240257..241402	+	381	55377181	yrbE	rrnAC0268	-	oxidoreductase
240	 65.23	0	241450..242631	+	393	55377182	gbp1	rrnAC0269	-	translation-associated GTPase
241	 66.13	0	242668..243594	-	308	55377183	-	rrnAC0271	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.