IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1796	 64.10	0	1813371..1815008	+	545	55378738	nuoC	rrnAC2023	-	NADH dehydrogenase I chain C D
1797	 60.11	0	1815070..1815603	+	177	55378739	msrA1	rrnAC2024	-	methionine sulfoxide reductase A
1798	 60.29	0	1815796..1815999	-	67	55378740	-	rrnAC2025	-	hypothetical protein
1799	 58.59	-1	1816075..1816272	+	65	55378741	-	rrnAC2026	-	hypothetical protein
1800	 64.51	0	1816272..1818359	+	695	55378742	cdc48a	rrnAC2027	-	cell division cycle protein 48
1801	 57.46	-1	1818356..1818583	-	75	55378743	-	rrnAC2028	-	hypothetical protein
1802	 60.82	0	1818649..1819401	-	250	55378744	xop1	rrnAC2030	-	bacteriorhodopsin precursor
1803	 55.84	-1	1819740..1820090	+	116	55378745	-	rrnAC2031	-	hypothetical protein
1804	 60.14	0	1820156..1820599	+	147	55378746	-	rrnAC2032	-	thioesterase of unknown specificity
1805	 60.42	0	1820703..1821887	+	394	55378747	htlA	rrnAC2034	-	HTR-like protein
1806	 59.77	0	1821891..1823123	-	410	55378748	-	rrnAC2035	-	hypothetical protein
1807	 57.65	-1	1823972..1824880	+	302	55378749	pkn	rrnAC2036	-	serine/threonine protein kinase
1808	 61.90	0	1825575..1825994	+	139	55378750	troR	rrnAC2037	-	iron-dependent repressor
1809	 61.47	0	1826164..1826490	+	108	55378751	nifU2	rrnAC2038	-	NifU-like domain-containing protein
1810	 64.36	0	1826792..1828741	+	649	55378752	oppA	rrnAC2039	-	oligopeptide ABC transporter solute-binding protein
1811	 63.10	0	1828751..1829704	+	317	55378753	oppB	rrnAC2040	-	oligopeptide ABC transporter permease protein
1812	 64.45	0	1829708..1830745	+	345	55378754	oppC2	rrnAC2041	-	oligopeptide transport system permease protein OppC
1813	 63.54	0	1830745..1831926	+	393	55378755	oppD1	rrnAC2042	-	oligopeptide ABC transporter ATPase component
1814	 63.57	0	1831919..1833241	+	440	55378756	oppF	rrnAC2043	-	oligopeptide ABC transporter ATP-binding protein
1815	 61.56	0	1833281..1835629	-	782	55378757	htlD	rrnAC2044	-	HTR-like protein
1816	 64.43	0	1835747..1836373	+	208	55378758	-	rrnAC2045	-	hypothetical protein
1817	 61.88	0	1836403..1837446	-	347	55378759	-	rrnAC2046	-	hypothetical protein
1818	 63.12	0	1837439..1838398	-	319	55378760	sppA	rrnAC2047	-	protease IV-like
1819	 64.75	0	1838526..1839410	+	294	55378761	mocA	rrnAC2048	-	oxidoreductase
1820	 67.18	+1	1839437..1840222	+	261	55378762	-	rrnAC2049	-	hypothetical protein
1821	 66.36	0	1840333..1840659	+	108	55378763	-	rrnAC2050	-	hypothetical protein
1822	 66.86	+1	1840688..1841707	-	339	55378764	tfbF	rrnAC2051	-	transcription initiation factor IIB
1823	 65.15	0	1841946..1842737	-	263	55378765	-	rrnAC2052	-	transcription regulator
1824	 64.43	0	1842827..1843228	+	133	55378766	-	rrnAC2053	-	hypothetical protein
1825	 64.10	0	1843244..1844023	-	259	55378767	-	rrnAC2054	-	hypothetical protein
1826	 66.67	0	1844113..1845075	-	320	55378768	serA3	rrnAC2056	-	D-3-phosphoglycerate dehydrogenase
1827	 56.41	-1	1845240..1845512	+	90	55378769	moaD	rrnAC2057	-	molybdopterin converting factor subunit 1
1828	 60.95	0	1845538..1845939	-	133	55378770	-	rrnAC2058	-	hypothetical protein
1829	 64.77	0	1846031..1846399	+	122	55378771	-	rrnAC2059	-	hypothetical protein
1830	 61.57	0	1846504..1846758	+	84	55378772	-	rrnAC2060	-	hypothetical protein
1831	 64.50	0	1846769..1847137	+	122	55378773	-	rrnAC2061	-	hypothetical protein
1832	 58.74	0	1847121..1847486	-	121	55378774	-	rrnAC2062	-	hypothetical protein
1833	 62.30	0	1847523..1849469	-	648	55378775	aor1	rrnAC2064	-	aldehyde ferredoxin oxidoreductase
1834	 67.17	+1	1849730..1850320	+	196	55378776	rpl15E	rrnAC2065	-	50S ribosomal protein L15e
1835	 70.83	+1	1850598..1851629	-	343	55378777	blh	rrnAC2066	-	Brp-like protein-like
1836	 63.09	0	1851620..1852345	-	241	55378778	crtY	rrnAC2067	-	lycopene cyclase
1837	 64.40	0	1852394..1853365	-	323	55378779	crtB	rrnAC2069	-	phytoene synthase
1838	 63.31	0	1853622..1855202	-	526	55378780	boa	rrnAC2070	-	putative light- and oxygen-sensing transcription regulator
1839	 63.16	0	1855332..1855616	+	94	55378781	-	rrnAC2071	-	hypothetical protein
1840	 63.10	0	1855683..1857056	+	457	55378782	vacB	rrnAC2072	-	ribonuclease R
1841	 65.86	0	1857457..1858197	+	246	55378783	trp2	rrnAC2073	-	ABC transporter ATP-binding protein
1842	 66.85	+1	1858194..1859804	+	536	55378784	-	rrnAC2074	-	hypothetical protein
1843	 66.83	0	1859801..1860403	-	200	55378785	nusA1	rrnAC2075	-	transcription anti-termination factor
1844	 67.60	+1	1860474..1861652	+	392	55378786	-	rrnAC2076	-	hypothetical protein
1845	 60.54	0	1861675..1861968	-	97	55378787	-	rrnAC2078	-	hypothetical protein
1846	 51.50	-2	1862400..1863065	-	221	55378788	-	rrnAC2079	-	hypothetical protein
1847	 60.76	0	1863533..1864921	-	462	55378789	-	rrnAC2080	-	hypothetical protein
1848	 63.49	0	1865070..1865918	+	282	55378790	-	rrnAC2081	-	hypothetical protein
1849	 61.83	0	1865957..1866349	+	130	55378791	dhp	rrnAC2082	-	hypothetical protein
1850	 60.03	0	1866748..1867515	-	255	55378792	yadH	rrnAC2083	-	ABC transporter permease protein
1851	 63.81	0	1867512..1868456	-	314	55378793	nosF-3	rrnAC2084	-	ABC transporter ATP-binding protein
1852	 59.20	0	1868580..1869101	-	173	55378795	-	rrnAC2085	-	hypothetical protein
1853	 61.19	0	1869085..1869504	+	139	55378794	-	rrnAC2086	-	hypothetical protein
1854	 62.08	0	1869527..1870006	-	159	55378796	-	rrnAC2087	-	PUA domain-containing protein
1855	 67.11	+1	1870102..1871013	+	303	55378797	-	rrnAC2088	-	hypothetical protein
1856	 65.59	0	1871010..1871381	-	123	55378798	-	rrnAC2089	-	hypothetical protein
1857	 65.81	0	1871477..1872292	-	271	55378799	moeB	rrnAC2090	-	molybdopterin biosynthesis protein MoeB
1858	 60.28	0	1872375..1873361	-	328	55378800	htr	rrnAC2091	-	MCP domain-containing signal transducer
1859	 65.14	0	1873451..1874953	-	500	55378801	cxp	rrnAC2092	-	carboxypeptidase
1860	 62.13	0	1875042..1876208	-	388	55378802	-	rrnAC2094	-	amidase-related protein
1861	 69.53	+1	1876394..1877476	-	360	55378803	argE	rrnAC2095	-	acetylornithine deacetylase
1862	 62.77	0	1877689..1878612	+	307	55378804	uvsE	rrnAC2096	-	putative UV damage endonuclease
1863	 65.14	0	1878669..1880573	+	634	55378805	-	rrnAC2098	-	ATPase
1864	 65.82	0	1880672..1881493	+	273	55378806	-	rrnAC2099	-	hypothetical protein
1865	 64.87	0	1881495..1882052	+	185	55378807	entB1	rrnAC2100	-	isochorismatase
1866	 58.33	-1	1882099..1882362	-	87	55378808	-	rrnAC2101	-	hypothetical protein
1867	 62.63	0	1882488..1882784	+	98	55378809	-	rrnAC2102	-	hypothetical protein
1868	 63.93	0	1882787..1884616	+	609	55378810	rli	rrnAC2103	-	putative ATPase RIL
1869	 62.50	0	1884645..1884860	-	71	55378811	-	rrnAC2104	-	hypothetical protein
1870	 61.88	0	1884929..1885450	-	173	161723233	-	rrnAC2105	-	archaemetzincin-like protein
1871	 67.01	+1	1885914..1886786	+	290	55378812	-	rrnAC2106	-	hypothetical protein
1872	 64.62	0	1886862..1887251	+	129	55378814	-	rrnAC2107	-	hypothetical protein
1873	 66.52	0	1887301..1887969	+	222	55378815	npdG-1	rrnAC2108	-	F420-dependent NADP reductase
1874	 58.77	0	1888309..1889055	+	248	55378816	htlD	rrnAC2109	-	HTR-like protein
1875	 60.30	0	1889110..1889376	-	88	55378817	trxA3	rrnAC2110	-	thioredoxin
1876	 58.64	-1	1889492..1889653	+	53	55378818	sec61beta	rrnAC2111	-	preprotein translocase subunit SecG
1877	 64.00	0	1889698..1890072	+	124	55378819	-	rrnAC2112	-	hypothetical protein
1878	 71.02	+2	1890069..1891469	+	466	55378820	-	rrnAC2113	-	hypothetical protein
1879	 69.94	+1	1891499..1892905	-	468	55378821	-	rrnAC2114	-	hypothetical protein
1880	 57.91	-1	1892960..1893553	-	197	55378822	-	rrnAC2115	-	hypothetical protein
1881	 64.99	0	1893658..1896636	+	992	55378823	uvrA	rrnAC2116	-	excinuclease ABC subunit A
1882	 64.84	0	1896719..1897486	+	255	55378824	-	rrnAC2117	-	hypothetical protein
1883	 66.25	0	1897659..1899566	+	635	55378825	-	rrnAC2119	-	hypothetical protein
1884	 66.45	0	1899647..1901929	+	760	55378826	-	rrnAC2121	-	pentapeptide repeat-containing protein
1885	 68.72	+1	1901970..1902944	+	324	55378827	-	rrnAC2123	-	hypothetical protein
1886	 65.89	0	1903003..1903389	-	128	55378828	-	rrnAC2124	-	hypothetical protein
1887	 61.88	0	1903458..1903937	+	159	55378829	-	rrnAC2125	-	hypothetical protein
1888	 67.59	+1	1904019..1905101	+	360	55378830	bchP	rrnAC2126	-	geranylgeranyl hydrogenase
1889	 63.71	0	1905460..1906170	+	236	55378831	-	rrnAC2127	-	hypothetical protein
1890	 65.54	0	1906202..1906999	-	265	55378832	sseA1	rrnAC2128	-	thiosulfate sulfurtransferase
1891	 62.42	0	1907231..1908124	+	297	55378833	sseA2	rrnAC2129	-	thiosulfate sulfurtransferase
1892	 61.76	0	1908421..1908726	+	101	55378834	-	rrnAC2131	-	hypothetical protein
1893	 65.37	0	1909136..1910371	+	411	55378835	epf1	rrnAC2133	-	mRNA 3'-end processing factor
1894	 59.44	0	1910400..1910579	-	59	55378836	-	rrnAC2135	-	hypothetical protein
1895	 64.72	0	1910732..1911964	+	410	55378837	-	rrnAC2136	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.