IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1676	 64.05	0	1680816..1681619	-	267	55378618	deoC2	rrnAC1881	-	fructose-bisphosphate aldolase
1677	 64.51	0	1681646..1682527	-	293	55378619	trpA	rrnAC1884	-	tryptophan synthase subunit alpha
1678	 63.97	0	1682527..1683789	-	420	55378620	trpB	rrnAC1885	-	tryptophan synthase subunit beta
1679	 65.56	0	1683786..1684601	-	271	55378621	trpC	rrnAC1886	-	indole-3-glycerol phosphate synthase
1680	 60.76	0	1684705..1685229	+	174	55378622	hat5	rrnAC1887	-	putative acetyltransferase
1681	 62.12	0	1685330..1686517	+	395	55378623	gbp5	rrnAC1888	-	translation-associated GTPase
1682	 62.22	0	1686562..1687101	-	179	55378624	-	rrnAC1890	-	hypothetical protein
1683	 67.17	+1	1687206..1687805	-	199	55378625	-	rrnAC1891	-	hypothetical protein
1684	 63.47	0	1687802..1688458	-	218	55378626	-	rrnAC1892	-	DSBA-like thioredoxin domain-containing protein
1685	 57.25	-1	1688796..1689857	-	353	55378627	ldc	rrnAC1893	-	LD-carboxypeptidase
1686	 62.33	0	1690454..1691098	+	214	55378628	-	rrnAC1895	-	putative DNA binding
1687	 62.89	0	1691219..1692808	+	529	55378629	-	rrnAC1896	-	hypothetical protein
1688	 64.20	0	1692865..1694244	+	459	55378630	-	rrnAC1898	-	hypothetical protein
1689	 67.76	+1	1694359..1695549	-	396	55378631	-	rrnAC1899	-	hypothetical protein
1690	 67.98	+1	1695628..1696692	-	354	55378632	brp	rrnAC1901	-	bacteriorhodopsin related protein
1691	 67.19	+1	1696842..1698365	+	507	55378633	crtI1	rrnAC1902	-	phytoene dehydrogenase
1692	 61.75	0	1698484..1699032	+	182	55378634	apt2	rrnAC1903	-	adenine phosphoribosyltransferase
1693	 64.36	0	1699052..1699354	-	100	55378635	-	rrnAC1904	-	hypothetical protein
1694	 66.31	0	1699622..1699900	+	92	55378636	dsbB1	rrnAC1905	-	disulfide bond formation protein
1695	 65.50	0	1700008..1701039	+	343	55378637	tas	rrnAC1906	-	oxidoreductase
1696	 62.79	0	1701151..1702464	-	437	55378638	-	rrnAC1907	-	putative sugar transporter
1697	 65.71	0	1702587..1703423	-	278	55378639	nthD	rrnAC1908	-	endonuclease III
1698	 68.04	+1	1703863..1706334	-	823	55378640	fbr1	rrnAC1910	-	cytochrome-like protein Fbr
1699	 64.62	0	1706411..1707190	-	259	55378641	-	rrnAC1911	-	hypothetical protein
1700	 61.02	0	1707190..1707756	-	188	55378642	nadM	rrnAC1913	-	nicotinamide-nucleotide adenylyltransferase
1701	 63.76	0	1707927..1710056	+	709	55378643	lon	rrnAC1914	-	ATP-dependent protease Lon
1702	 66.91	+1	1710057..1710878	+	273	55378644	-	rrnAC1915	-	putative protease
1703	 63.89	0	1710875..1711378	-	167	55378645	-	rrnAC1916	-	6-O-methylguanine DNA methyltransferase
1704	 63.07	0	1711395..1712396	-	333	55378646	glpQ2	rrnAC1917	-	glycerophosphoryl diester phosphodiesterase
1705	 64.00	0	1712508..1713521	-	337	55378647	dhs	rrnAC1918	-	putative deoxyhypusine synthase
1706	 65.66	0	1713655..1714347	+	230	55378648	azlC	rrnAC1920	-	branched-chain amino acid transport protein AzlC
1707	 64.85	0	1714337..1714666	+	109	55378649	-	rrnAC1921	-	hypothetical protein
1708	 65.96	0	1714667..1715230	-	187	55378650	-	rrnAC1922	-	hypothetical protein
1709	 65.10	0	1715235..1715999	-	254	55378651	nif3	rrnAC1923	-	NGG1p interacting factor 3
1710	 64.29	0	1716051..1716848	-	265	55378652	-	rrnAC1924	-	hypothetical protein
1711	 65.71	0	1717981..1719030	-	349	55378653	mhpC	rrnAC1925	-	2-hydroxy-6-ketonona-24-dienedioic acid hydrolase
1712	 63.94	0	1719055..1720080	+	341	55378654	trzA2	rrnAC1926	-	N-ethylammeline chlorohydrolase
1713	 68.41	+1	1720116..1720919	-	267	55378655	speB1	rrnAC1927	-	agmatinase
1714	 59.58	0	1720922..1721302	-	126	55378656	eif5A	rrnAC1929	-	translation initiation factor IF-5A
1715	 72.95	+2	1722690..1723055	+	121	55378657	-	rrnAC1930	-	putative CobD/Cbib protein
1716	 72.22	+2	1723346..1723849	+	167	55378658	cobS	rrnAC1931	-	cobalamin-5-phosphate synthase
1717	 66.30	0	1723849..1724388	+	179	55378659	ispD	rrnAC1932	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
1718	 69.31	+1	1724453..1725511	+	352	55378660	hisC1	rrnAC1934	-	histidinol-phosphate aminotransferase
1719	 69.83	+1	1725495..1726220	+	241	55378661	-	rrnAC1935	-	hypothetical protein
1720	 67.28	+1	1726290..1726940	+	216	55378662	cobI	rrnAC1936	-	cobalamin adenosyltransferase
1721	 66.33	0	1727311..1728789	+	492	55378663	cobQ	rrnAC1938	-	cobyric acid synthase
1722	 65.36	0	1728850..1729617	+	255	55378664	minD1	rrnAC1939	-	cell division inhibitor
1723	 68.11	+1	1729614..1730168	+	184	55378665	-	rrnAC1940	-	hypothetical protein
1724	 58.55	-1	1730243..1730476	-	77	55378666	-	rrnAC1941	-	hypothetical protein
1725	 60.52	0	1730772..1731584	-	270	55378667	-	rrnAC1942	-	hypothetical protein
1726	 64.92	0	1731653..1733257	-	534	55378668	phrB2	rrnAC1943	-	deoxyribodipyrimidine photolyase
1727	 62.18	0	1733409..1733921	+	170	55378669	-	rrnAC1944	-	hypothetical protein
1728	 63.11	0	1733981..1734514	-	177	55378670	-	rrnAC1945	-	hypothetical protein
1729	 66.67	0	1734511..1734915	-	134	55378671	-	rrnAC1946	-	hypothetical protein
1730	 65.96	0	1734908..1735612	-	234	55378672	-	rrnAC1947	-	hypothetical protein
1731	 63.18	0	1735609..1736010	-	133	55378673	-	rrnAC1948	-	hypothetical protein
1732	 66.13	0	1736770..1738449	-	559	55378674	-	rrnAC1950	-	hypothetical protein
1733	 63.70	0	1738652..1740910	-	752	55378675	gspE1	rrnAC1951	-	type II secretion system protein
1734	 59.54	0	1741089..1741790	+	233	55378676	-	rrnAC1952	-	hypothetical protein
1735	 61.50	0	1741876..1742553	+	225	55378677	-	rrnAC1953	-	DNA binding protein
1736	 63.06	0	1742678..1743454	+	258	55378678	yusZ1	rrnAC1954	-	oxidoreductase
1737	 68.14	+1	1743702..1744922	+	406	55378679	glpA	rrnAC1955	-	glycerol-3-phosphate dehydrogenase subunit A
1738	 61.97	0	1745011..1745862	+	283	55378680	eif2BD2	rrnAC1956	-	translation initiation factor eIF-2B subunit delta
1739	 64.21	0	1745869..1747539	-	556	55378681	malQ	rrnAC1957	-	4-alpha-glucanotransferase
1740	 62.59	0	1747548..1748627	+	359	55378682	lpg1	rrnAC1958	-	LPS glycosyltransferase
1741	 61.82	0	1748642..1748971	-	109	55378683	-	rrnAC1959	-	hypothetical protein
1742	 62.33	0	1749101..1750045	-	314	55378684	graD4b	rrnAC1960	-	glucose-1-phosphate thymidylyltransferase
1743	 66.14	0	1750096..1754637	-	1513	55378685	cga-1	rrnAC1961	-	glucoamylase
1744	 67.62	+1	1754759..1756750	-	663	55378686	malA	rrnAC1962	-	putative alpha-D-14-glucosidase
1745	 64.66	0	1756935..1757183	+	82	55378687	-	rrnAC1963	-	hypothetical protein
1746	 62.09	0	1757669..1758433	-	254	55378688	arcR6	rrnAC1964	-	transcription regulator
1747	 64.98	0	1758847..1760154	+	435	55378689	aceB	rrnAC1965	-	malate synthase
1748	 64.30	0	1760198..1760578	-	126	55378690	gloA3	rrnAC1966	-	lactoylglutathione lyase
1749	 64.36	0	1760681..1763719	+	1012	55378691	glcD1	rrnAC1967	-	glycolate oxidase subunit GlcD
1750	 66.36	0	1764280..1765578	-	432	55378692	-	rrnAC1968	-	hypothetical protein
1751	 65.87	0	1765702..1766832	-	376	55378693	-	rrnAC1970	-	hypothetical protein
1752	 61.73	0	1766944..1767753	+	269	55378694	arcR5	rrnAC1971	-	transcription regulator
1753	 64.86	0	1767812..1768975	-	387	55378695	gcdH	rrnAC1972	-	glutaryl-CoA dehydrogenase
1754	 64.01	0	1769058..1770527	+	489	55378696	aldY4	rrnAC1973	-	aldehyde dehydrogenase
1755	 62.87	0	1770622..1771437	+	271	55378697	aacC	rrnAC1974	-	aminoglycoside N3'-acetyltransferase
1756	 66.85	+1	1771471..1772532	-	353	55378698	adh5	rrnAC1975	-	alcohol dehydrogenase
1757	 63.10	0	1772680..1774335	-	551	55378699	alkK4	rrnAC1977	-	medium-chain fatty acid-CoA ligase
1758	 60.71	0	1774368..1774703	-	111	55378700	-	rrnAC1978	-	hypothetical protein
1759	 67.17	+1	1774711..1775301	+	196	55378701	ech5	rrnAC1979	-	enoyl-CoA hydratase/isomerase
1760	 66.01	0	1775345..1776415	+	356	55378702	aph	rrnAC1980	-	aminoglycoside phosphotransferase
1761	 66.62	0	1776584..1778548	+	654	55378703	hbd2	rrnAC1982	-	3-hydroxybutyryl-CoA dehydrogenase
1762	 65.41	0	1778575..1780329	-	584	55378704	acdI	rrnAC1983	-	acyl-CoA dehydrogenase
1763	 65.68	0	1780696..1781505	-	269	55378705	fabG4	rrnAC1984	-	3-oxoacyl-[acyl-carrier protein] reductase
1764	 64.19	0	1781783..1782226	+	147	55378706	maoC1	rrnAC1985	-	monoamine oxidase regulatory protein
1765	 62.98	0	1782275..1783414	-	379	55378707	acdC	rrnAC1986	-	acyl-CoA dehydrogenase
1766	 65.43	0	1783516..1784886	+	456	55378708	anf	rrnAC1987	-	ABC transporter substrate-binding protein
1767	 65.09	0	1784890..1785777	+	295	55378709	livH-5	rrnAC1989	-	branched-chain amino acid ABC transporter permease protein
1768	 66.49	0	1785770..1786891	+	373	55378710	livM-4	rrnAC1991	-	branched-chain amino acid ABC transporter permease protein
1769	 64.13	0	1787035..1787625	+	196	55378711	livG-5	rrnAC1992	-	branched-chain amino acid ABC transporter ATP-binding protein
1770	 64.99	0	1787622..1788338	+	238	55378712	livF-5	rrnAC1993	-	branched-chain amino acid ABC transporter ATP-binding protein
1771	 57.44	-1	1789220..1789555	+	111	55378713	-	rrnAC1994	-	hypothetical protein
1772	 61.29	0	1789971..1790249	-	92	55378714	-	rrnAC1995	-	hypothetical protein
1773	 62.37	0	1790366..1791016	+	216	55378715	-	rrnAC1996	-	DNA binding domain-containing protein
1774	 60.74	0	1791488..1792246	-	252	55378716	rbnBN2	rrnAC1997	-	ribonuclease BN
1775	 64.69	0	1792635..1793090	-	151	55378717	-	rrnAC1998	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.