IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1556	 62.18	0	1551912..1553249	+	445	55378498	mvaS	rrnAC1740	-	hydroxymethylglutaryl-CoA synthase
1557	 64.97	0	1553748..1554455	-	235	55378499	-	rrnAC1742	-	hypothetical protein
1558	 64.40	0	1554508..1554993	-	161	55378500	-	rrnAC1743	-	hypothetical protein
1559	 64.90	0	1555155..1556681	+	508	55378501	rfcB	rrnAC1744	-	replication factor C large subunit
1560	 64.93	0	1556682..1557662	-	326	55378502	yckA-2	rrnAC1745	-	amino acid ABC transporter permease protein
1561	 63.21	0	1557666..1558418	-	250	55378503	glnQ1	rrnAC1747	-	glutamine ABC transporter ATP-binding protein
1562	 64.17	0	1558415..1559095	-	226	55378504	glnH2	rrnAC1749	-	glutamine ABC transporter permease protein
1563	 61.80	0	1559099..1559899	-	266	55378505	argT	rrnAC1750	-	amino acid ABC transporter amino acid-binding protein
1564	 63.60	0	1559960..1560448	-	162	55378506	ccp	rrnAC1751	-	cytochrome aa3 controlling protein
1565	 61.08	0	1560577..1562490	+	637	55378507	htr15	rrnAC1752	-	MCP domain-containing signal transducer
1566	 63.47	0	1562662..1564914	+	750	55378508	maeB	rrnAC1754	-	malic enzyme
1567	 67.12	+1	1565617..1566279	-	220	55378509	-	rrnAC1755	-	hypothetical protein
1568	 54.26	-2	1566442..1566570	+	42	55378510	-	rrnAC1756	-	hypothetical protein
1569	 63.94	0	1566677..1567372	-	231	55378511	gptA	rrnAC1757	-	purine phosphoribosyltransferase
1570	 68.04	+1	1567443..1568825	-	460	55378512	truD	rrnAC1758	-	tRNA pseudouridine synthase D
1571	 64.49	0	1568980..1569117	-	45	55378513	-	rrnAC1759	-	hypothetical protein
1572	 65.78	0	1569114..1570463	-	449	55378514	-	rrnAC1760	-	transporter
1573	 63.53	0	1570542..1571945	-	467	55378515	atoE	rrnAC1761	-	short chain fatty acids transporter
1574	 65.64	0	1572105..1573076	+	323	55378516	serA2	rrnAC1762	-	D-3-phosphoglycerate dehydrogenase
1575	 64.83	0	1573099..1574076	-	325	55378517	-	rrnAC1764	-	HTH DNA-binding protein
1576	 63.79	0	1574196..1574855	+	219	55378518	tenA	rrnAC1765	-	transcriptional activator tenA
1577	 67.71	+1	1574852..1575619	+	255	55378519	tenA-2	rrnAC1767	-	transcriptional regulator putative
1578	 67.53	+1	1575620..1577128	+	502	55378520	putP-2	rrnAC1769	-	sodium-solute symporter putative
1579	 67.44	+1	1577125..1577253	+	42	55378521	-	rrnAC1770	-	hypothetical protein
1580	 60.61	0	1577336..1577731	+	131	55378522	-	rrnAC1771	-	hypothetical protein
1581	 66.96	+1	1577789..1578481	-	230	55378523	psmA1	rrnAC1772	-	proteasome subunit alpha
1582	 66.26	0	1578481..1579215	-	244	55378524	psmA2	rrnAC1773	-	proteasome subunit alpha
1583	 66.91	+1	1579285..1579695	-	136	55378525	-	rrnAC1774	-	peptidyl-tRNA hydrolase
1584	 62.79	0	1579722..1580444	+	240	55378526	-	rrnAC1775	-	hypothetical protein
1585	 62.24	0	1580559..1581146	+	195	161723234	dcd	rrnAC1776	-	deoxycytidine triphosphate deaminase
1586	 67.89	+1	1581147..1582043	+	298	55378528	-	rrnAC1777	-	DNA binding protein
1587	 71.12	+2	1582175..1582690	+	171	55378529	aknG	rrnAC1779	-	alkanonic acid methyltransferase
1588	 66.80	0	1582712..1583473	-	253	55378530	-	rrnAC1780	-	hypothetical protein
1589	 63.60	0	1583663..1584151	-	162	55378531	-	rrnAC1781	-	hypothetical protein
1590	 64.49	0	1584283..1585245	-	320	55378532	thi1	rrnAC1782	-	ribulose-1,5-biphosphate synthetase
1591	 68.57	+1	1585306..1586094	-	262	55378533	-	rrnAC1783	-	hypothetical protein
1592	 65.58	0	1586172..1586630	-	152	55378534	-	rrnAC1784	-	hypothetical protein
1593	 66.20	0	1586862..1587506	-	214	55378535	-	rrnAC1786	-	HTH DNA-binding protein
1594	 64.72	0	1587588..1589336	+	582	55378536	hutU	rrnAC1787	-	urocanate hydratase
1595	 71.54	+2	1589333..1590256	+	307	55378537	hutG	rrnAC1789	-	formimidoylglutamase
1596	 67.62	+1	1590253..1591515	+	420	55378538	hutI	rrnAC1790	-	imidazolonepropionase
1597	 68.91	+1	1591512..1593161	+	549	55378539	hutH	rrnAC1791	-	histidine ammonia-lyase
1598	 66.86	+1	1593169..1595721	-	850	55378540	ruvB	rrnAC1792	-	holliday junction DNA helicase
1599	 67.73	+1	1595718..1596467	-	249	55378541	-	rrnAC1793	-	hypothetical protein
1600	 66.34	0	1596611..1597522	+	303	55378542	dapF	rrnAC1794	-	diaminopimelate epimerase
1601	 65.23	0	1597592..1599952	+	786	55378543	ppsA	rrnAC1795	-	phosphoenolpyruvate synthase
1602	 64.12	0	1600011..1600913	+	300	55378544	htlC	rrnAC1797	-	HTR-like protein
1603	 66.38	0	1601057..1602109	+	350	55378545	gadD	rrnAC1798	-	L-tyrosine decarboxylase
1604	 65.51	0	1602899..1605052	+	717	55378546	metG	rrnAC1800	-	methionyl-tRNA synthetase
1605	 63.66	0	1605098..1605463	+	121	55378547	-	rrnAC1801	-	hypothetical protein
1606	 63.48	0	1605536..1606132	+	198	55378548	-	rrnAC1802	-	hypothetical protein
1607	 61.21	0	1606204..1607394	+	396	55378549	-	rrnAC1803	-	hypothetical protein
1608	 64.19	0	1607445..1608050	+	201	55378550	gntR	rrnAC1805	-	transcription regulator
1609	 60.45	0	1608102..1609982	-	626	55378551	htlD	rrnAC1806	-	HTR-like protein
1610	 58.44	-1	1610182..1610424	-	80	55378552	-	rrnAC1807	-	hypothetical protein
1611	 60.69	0	1610641..1611075	+	144	55378553	-	rrnAC1808	-	hypothetical protein
1612	 65.54	0	1611078..1611521	-	147	55378554	-	rrnAC1809	-	hypothetical protein
1613	 67.30	+1	1611846..1612631	-	261	55378555	-	rrnAC1810	-	hypothetical protein
1614	 58.52	-1	1612641..1612910	-	89	55378556	-	rrnAC1811	-	hypothetical protein
1615	 62.86	0	1613341..1613865	+	174	55378557	pnm	rrnAC1812	-	N-methyltransferase-like
1616	 65.12	0	1613959..1614864	+	301	55378558	-	rrnAC1813	-	glycosyl transferase
1617	 63.95	0	1614908..1615717	-	269	55378559	-	rrnAC1814	-	hypothetical protein
1618	 66.35	0	1615872..1617452	+	526	55378560	cctA3	rrnAC1815	-	thermosome alpha subunit
1619	 64.12	0	1617561..1617992	-	143	55378561	-	rrnAC1816	-	hypothetical protein
1620	 68.97	+1	1618019..1618192	-	57	55378562	-	rrnAC1817	-	hypothetical protein
1621	 65.71	0	1618274..1620145	+	623	55378563	-	rrnAC1818	-	putative hydrolase
1622	 57.24	-1	1620413..1621303	+	296	55378564	-	rrnAC1820	-	hypothetical protein
1623	 66.52	0	1621341..1622039	+	232	55378565	lysE	rrnAC1821	-	L-lysine exporter
1624	 61.26	0	1622034..1622699	-	221	55378566	-	rrnAC1822	-	hypothetical protein
1625	 57.60	-1	1622860..1623234	+	124	55378567	-	rrnAC1823	-	hypothetical protein
1626	 60.36	0	1623282..1624010	-	242	55378568	-	rrnAC1824	-	acetyltransferase
1627	 57.24	-1	1624494..1624928	-	144	55378569	idr	rrnAC1825	-	iron-dependent repressor
1628	 56.96	-1	1624925..1625161	-	78	55378570	-	rrnAC1826	-	hypothetical protein
1629	 66.67	0	1625741..1626247	-	168	55378571	-	rrnAC1827	-	hypothetical protein
1630	 64.03	0	1626472..1627683	-	403	55378572	-	rrnAC1828	-	hypothetical protein
1631	 60.52	0	1627686..1629116	-	476	55378573	-	rrnAC1829	-	hypothetical protein
1632	 60.97	0	1629153..1630082	-	309	55378574	yurF	rrnAC1830	-	ABC transporter ATP-binding protein
1633	 61.03	0	1630208..1634374	-	1388	55378575	polB1	rrnAC1831	-	DNA polymerase B elongation subunit
1634	 50.69	-2	1635741..1636460	-	239	55378576	-	rrnAC1833	-	hypothetical protein
1635	 50.94	-2	1636496..1637188	-	230	55378577	-	rrnAC1834	-	hypothetical protein
1636	 50.98	-2	1637650..1637802	-	50	55378578	-	rrnAC1835	-	hypothetical protein
1637	 50.44	-2	1640069..1641091	-	340	55378579	tnp	rrnAC1836	-	phage integrase/site-specific recombinase
1638	 63.18	0	1641234..1641635	+	133	55378580	-	rrnAC1837	-	hypothetical protein
1639	 65.72	0	1641663..1642085	+	140	55378581	-	rrnAC1838	-	hypothetical protein
1640	 61.94	0	1642111..1644837	-	908	55378582	smc1	rrnAC1840	-	chromosome segregation protein
1641	 65.10	0	1644800..1646074	-	424	55378583	yhcR2	rrnAC1841	-	phosphoesterase
1642	 66.15	0	1646159..1646545	-	128	55378584	-	rrnAC1842	-	hypothetical protein
1643	 59.69	0	1646714..1646842	+	42	55378585	-	rrnAC1843	-	hypothetical protein
1644	 64.94	0	1646933..1647454	+	173	55378586	-	rrnAC1844	-	hypothetical protein
1645	 64.40	0	1647484..1647924	+	146	55378587	-	rrnAC1845	-	hypothetical protein
1646	 65.93	0	1647917..1648861	+	314	55378588	-	rrnAC1846	-	hypothetical protein
1647	 66.41	0	1649015..1649779	+	254	55378589	virB11	rrnAC1848	-	type IV secretion system protein
1648	 69.25	+1	1650439..1651521	+	360	55378590	-	rrnAC1849	-	hypothetical protein
1649	 66.45	0	1651556..1652017	+	153	55378591	-	rrnAC1850	-	hypothetical protein
1650	 65.15	0	1651998..1652393	+	131	55378592	-	rrnAC1851	-	hypothetical protein
1651	 68.27	+1	1652390..1653262	+	290	55378593	-	rrnAC1852	-	hypothetical protein
1652	 67.16	+1	1653637..1656252	+	871	55378594	-	rrnAC1853	-	hypothetical protein
1653	 62.53	0	1656297..1656731	+	144	55378595	-	rrnAC1854	-	hypothetical protein
1654	 60.91	0	1657289..1657618	+	109	55378596	-	rrnAC1855	-	hypothetical protein
1655	 65.40	0	1657667..1658851	+	394	55378597	-	rrnAC1856	-	putative RNA binding protein
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.