IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1532	 61.07	0	1530215..1530625	-	136	55378474	-	rrnAC1713	-	hypothetical protein
1533	 55.38	-1	1530799..1530993	-	64	55378475	cspD5	rrnAC1714	-	cold shock protein
1534	 56.92	-1	1530996..1531190	-	64	55378476	cspD1	rrnAC1715	-	cold shock protein
1535	 61.81	0	1531306..1532232	+	308	55378477	uppS	rrnAC1716	-	undecaprenyl pyrophosphate synthetase
1536	 55.56	-1	1532237..1532362	-	41	55378478	-	rrnAC1717	-	hypothetical protein
1537	 67.23	+1	1533230..1534294	+	354	55378479	-	rrnAC1718	-	hypothetical protein
1538	 63.55	0	1534291..1534707	+	138	55378480	rimI	rrnAC1719	-	Pab N-terminal acetyltransferase
1539	 62.26	0	1534704..1536041	-	445	55378481	dnaG	rrnAC1720	-	DNA primase
1540	 66.53	0	1536220..1536930	-	236	55378482	-	rrnAC1721	-	hypothetical protein
1541	 62.32	0	1536982..1537326	+	114	55378483	csaA	rrnAC1722	-	protein secretion chaperonin CsaA
1542	 65.24	0	1537402..1537611	+	69	55378484	-	rrnAC1724	-	hypothetical protein
1543	 66.26	0	1537655..1539139	+	494	55378485	panF	rrnAC1726	-	pantothenate permease
1544	 66.20	0	1539242..1539673	+	143	55378486	-	rrnAC1727	-	hypothetical protein
1545	 63.94	0	1539743..1540660	+	305	55378487	-	rrnAC1728	-	hypothetical protein
1546	 63.78	0	1540858..1543563	+	901	55378488	valS	rrnAC1729	-	valyl-tRNA synthetase
1547	 62.71	0	1543656..1543832	+	58	55378489	-	rrnAC1730	-	hypothetical protein
1548	 65.24	0	1543869..1544639	-	256	55378490	-	rrnAC1731	-	hypothetical protein
1549	 66.45	0	1544806..1545714	+	302	55378491	-	rrnAC1732	-	pyridoxine biosynthesis protein
1550	 61.80	0	1546047..1547033	+	328	55378492	-	rrnAC1733	-	hypothetical protein
1551	 66.36	0	1547035..1547358	-	107	55378493	-	rrnAC1734	-	hypothetical protein
1552	 61.34	0	1547557..1548138	+	193	55378494	-	rrnAC1735	-	hypothetical protein
1553	 57.04	-1	1548185..1550179	+	664	55378495	-	rrnAC1737	-	hypothetical protein
1554	 63.47	0	1550199..1550948	-	249	55378496	-	rrnAC1738	-	hypothetical protein
1555	 62.43	0	1551130..1551813	+	227	55378497	-	rrnAC1739	-	hypothetical protein
1556	 62.18	0	1551912..1553249	+	445	55378498	mvaS	rrnAC1740	-	hydroxymethylglutaryl-CoA synthase
1557	 64.97	0	1553748..1554455	-	235	55378499	-	rrnAC1742	-	hypothetical protein
1558	 64.40	0	1554508..1554993	-	161	55378500	-	rrnAC1743	-	hypothetical protein
1559	 64.90	0	1555155..1556681	+	508	55378501	rfcB	rrnAC1744	-	replication factor C large subunit
1560	 64.93	0	1556682..1557662	-	326	55378502	yckA-2	rrnAC1745	-	amino acid ABC transporter permease protein
1561	 63.21	0	1557666..1558418	-	250	55378503	glnQ1	rrnAC1747	-	glutamine ABC transporter ATP-binding protein
1562	 64.17	0	1558415..1559095	-	226	55378504	glnH2	rrnAC1749	-	glutamine ABC transporter permease protein
1563	 61.80	0	1559099..1559899	-	266	55378505	argT	rrnAC1750	-	amino acid ABC transporter amino acid-binding protein
1564	 63.60	0	1559960..1560448	-	162	55378506	ccp	rrnAC1751	-	cytochrome aa3 controlling protein
1565	 61.08	0	1560577..1562490	+	637	55378507	htr15	rrnAC1752	-	MCP domain-containing signal transducer
1566	 63.47	0	1562662..1564914	+	750	55378508	maeB	rrnAC1754	-	malic enzyme
1567	 67.12	+1	1565617..1566279	-	220	55378509	-	rrnAC1755	-	hypothetical protein
1568	 54.26	-2	1566442..1566570	+	42	55378510	-	rrnAC1756	-	hypothetical protein
1569	 63.94	0	1566677..1567372	-	231	55378511	gptA	rrnAC1757	-	purine phosphoribosyltransferase
1570	 68.04	+1	1567443..1568825	-	460	55378512	truD	rrnAC1758	-	tRNA pseudouridine synthase D
1571	 64.49	0	1568980..1569117	-	45	55378513	-	rrnAC1759	-	hypothetical protein
1572	 65.78	0	1569114..1570463	-	449	55378514	-	rrnAC1760	-	transporter
1573	 63.53	0	1570542..1571945	-	467	55378515	atoE	rrnAC1761	-	short chain fatty acids transporter
1574	 65.64	0	1572105..1573076	+	323	55378516	serA2	rrnAC1762	-	D-3-phosphoglycerate dehydrogenase
1575	 64.83	0	1573099..1574076	-	325	55378517	-	rrnAC1764	-	HTH DNA-binding protein
1576	 63.79	0	1574196..1574855	+	219	55378518	tenA	rrnAC1765	-	transcriptional activator tenA
1577	 67.71	+1	1574852..1575619	+	255	55378519	tenA-2	rrnAC1767	-	transcriptional regulator putative
1578	 67.53	+1	1575620..1577128	+	502	55378520	putP-2	rrnAC1769	-	sodium-solute symporter putative
1579	 67.44	+1	1577125..1577253	+	42	55378521	-	rrnAC1770	-	hypothetical protein
1580	 60.61	0	1577336..1577731	+	131	55378522	-	rrnAC1771	-	hypothetical protein
1581	 66.96	+1	1577789..1578481	-	230	55378523	psmA1	rrnAC1772	-	proteasome subunit alpha
1582	 66.26	0	1578481..1579215	-	244	55378524	psmA2	rrnAC1773	-	proteasome subunit alpha
1583	 66.91	+1	1579285..1579695	-	136	55378525	-	rrnAC1774	-	peptidyl-tRNA hydrolase
1584	 62.79	0	1579722..1580444	+	240	55378526	-	rrnAC1775	-	hypothetical protein
1585	 62.24	0	1580559..1581146	+	195	161723234	dcd	rrnAC1776	-	deoxycytidine triphosphate deaminase
1586	 67.89	+1	1581147..1582043	+	298	55378528	-	rrnAC1777	-	DNA binding protein
1587	 71.12	+2	1582175..1582690	+	171	55378529	aknG	rrnAC1779	-	alkanonic acid methyltransferase
1588	 66.80	0	1582712..1583473	-	253	55378530	-	rrnAC1780	-	hypothetical protein
1589	 63.60	0	1583663..1584151	-	162	55378531	-	rrnAC1781	-	hypothetical protein
1590	 64.49	0	1584283..1585245	-	320	55378532	thi1	rrnAC1782	-	ribulose-1,5-biphosphate synthetase
1591	 68.57	+1	1585306..1586094	-	262	55378533	-	rrnAC1783	-	hypothetical protein
1592	 65.58	0	1586172..1586630	-	152	55378534	-	rrnAC1784	-	hypothetical protein
1593	 66.20	0	1586862..1587506	-	214	55378535	-	rrnAC1786	-	HTH DNA-binding protein
1594	 64.72	0	1587588..1589336	+	582	55378536	hutU	rrnAC1787	-	urocanate hydratase
1595	 71.54	+2	1589333..1590256	+	307	55378537	hutG	rrnAC1789	-	formimidoylglutamase
1596	 67.62	+1	1590253..1591515	+	420	55378538	hutI	rrnAC1790	-	imidazolonepropionase
1597	 68.91	+1	1591512..1593161	+	549	55378539	hutH	rrnAC1791	-	histidine ammonia-lyase
1598	 66.86	+1	1593169..1595721	-	850	55378540	ruvB	rrnAC1792	-	holliday junction DNA helicase
1599	 67.73	+1	1595718..1596467	-	249	55378541	-	rrnAC1793	-	hypothetical protein
1600	 66.34	0	1596611..1597522	+	303	55378542	dapF	rrnAC1794	-	diaminopimelate epimerase
1601	 65.23	0	1597592..1599952	+	786	55378543	ppsA	rrnAC1795	-	phosphoenolpyruvate synthase
1602	 64.12	0	1600011..1600913	+	300	55378544	htlC	rrnAC1797	-	HTR-like protein
1603	 66.38	0	1601057..1602109	+	350	55378545	gadD	rrnAC1798	-	L-tyrosine decarboxylase
1604	 65.51	0	1602899..1605052	+	717	55378546	metG	rrnAC1800	-	methionyl-tRNA synthetase
1605	 63.66	0	1605098..1605463	+	121	55378547	-	rrnAC1801	-	hypothetical protein
1606	 63.48	0	1605536..1606132	+	198	55378548	-	rrnAC1802	-	hypothetical protein
1607	 61.21	0	1606204..1607394	+	396	55378549	-	rrnAC1803	-	hypothetical protein
1608	 64.19	0	1607445..1608050	+	201	55378550	gntR	rrnAC1805	-	transcription regulator
1609	 60.45	0	1608102..1609982	-	626	55378551	htlD	rrnAC1806	-	HTR-like protein
1610	 58.44	-1	1610182..1610424	-	80	55378552	-	rrnAC1807	-	hypothetical protein
1611	 60.69	0	1610641..1611075	+	144	55378553	-	rrnAC1808	-	hypothetical protein
1612	 65.54	0	1611078..1611521	-	147	55378554	-	rrnAC1809	-	hypothetical protein
1613	 67.30	+1	1611846..1612631	-	261	55378555	-	rrnAC1810	-	hypothetical protein
1614	 58.52	-1	1612641..1612910	-	89	55378556	-	rrnAC1811	-	hypothetical protein
1615	 62.86	0	1613341..1613865	+	174	55378557	pnm	rrnAC1812	-	N-methyltransferase-like
1616	 65.12	0	1613959..1614864	+	301	55378558	-	rrnAC1813	-	glycosyl transferase
1617	 63.95	0	1614908..1615717	-	269	55378559	-	rrnAC1814	-	hypothetical protein
1618	 66.35	0	1615872..1617452	+	526	55378560	cctA3	rrnAC1815	-	thermosome alpha subunit
1619	 64.12	0	1617561..1617992	-	143	55378561	-	rrnAC1816	-	hypothetical protein
1620	 68.97	+1	1618019..1618192	-	57	55378562	-	rrnAC1817	-	hypothetical protein
1621	 65.71	0	1618274..1620145	+	623	55378563	-	rrnAC1818	-	putative hydrolase
1622	 57.24	-1	1620413..1621303	+	296	55378564	-	rrnAC1820	-	hypothetical protein
1623	 66.52	0	1621341..1622039	+	232	55378565	lysE	rrnAC1821	-	L-lysine exporter
1624	 61.26	0	1622034..1622699	-	221	55378566	-	rrnAC1822	-	hypothetical protein
1625	 57.60	-1	1622860..1623234	+	124	55378567	-	rrnAC1823	-	hypothetical protein
1626	 60.36	0	1623282..1624010	-	242	55378568	-	rrnAC1824	-	acetyltransferase
1627	 57.24	-1	1624494..1624928	-	144	55378569	idr	rrnAC1825	-	iron-dependent repressor
1628	 56.96	-1	1624925..1625161	-	78	55378570	-	rrnAC1826	-	hypothetical protein
1629	 66.67	0	1625741..1626247	-	168	55378571	-	rrnAC1827	-	hypothetical protein
1630	 64.03	0	1626472..1627683	-	403	55378572	-	rrnAC1828	-	hypothetical protein
1631	 60.52	0	1627686..1629116	-	476	55378573	-	rrnAC1829	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.