IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
83	 62.28	0	76344..78008	+	554	55377025	etfA1	rrnAC0091	-	electron transfer flavoprotein alpha subunit
84	 67.39	+1	78001..79662	+	553	55377026	ydiS	rrnAC0094	-	flavoprotein
85	 66.94	+1	79674..80033	+	119	55377027	-	rrnAC0095	-	hypothetical protein
86	 62.30	0	80102..80833	+	243	55377028	hat-1	rrnAC0096	-	acetyl transferase
87	 64.21	0	80830..81804	-	324	55377029	mer3	rrnAC0097	-	N5N10-methylenetetrahydromethanopterin reductase
88	 62.73	0	81880..83481	-	533	55377030	alkK1	rrnAC0098	-	medium-chain acyl-CoA ligase
89	 67.88	+1	83605..83769	-	54	55377031	-	rrnAC0099	-	hypothetical protein
90	 67.47	+1	83766..84263	-	165	55377032	-	rrnAC0100	-	hypothetical protein
91	 68.64	+1	84260..86587	-	775	55377034	-	rrnAC0101	-	hypothetical protein
92	 69.53	+1	86586..87599	+	337	55377033	npd	rrnAC0102	-	2-nitropropane dioxygenase-related protein
93	 63.36	0	87813..88175	+	120	55377035	rpl7ae	rrnAC0103	-	50S ribosomal protein L7Ae
94	 65.81	0	88417..88767	+	116	55377036	rpl24E	rrnAC0104	-	50S ribosomal protein L24e
95	 63.23	0	88767..89231	+	154	55377037	ndk	rrnAC0106	-	nucleoside diphosphate kinase
96	 62.79	0	89297..89554	+	85	55377038	-	rrnAC0107	-	glutaredoxin-like
97	 62.41	0	89527..89667	-	46	55377039	-	rrnAC0108	-	hypothetical protein
98	 59.01	0	90289..90693	-	134	55377040	msrB	rrnAC0109	-	peptide methionine sulfoxide reductase msrB
99	 60.19	0	90823..92505	-	560	55377041	betA	rrnAC0110	-	GMC family oxidoreductase
100	 59.81	0	92502..93128	-	208	55377042	-	rrnAC0111	-	hypothetical protein
101	 58.62	-1	93088..94032	-	314	55377043	-	rrnAC0112	-	hypothetical protein
102	 59.28	0	94378..94824	-	148	55377044	pai1	rrnAC0113	-	sporulation regulator-like
103	 60.51	0	94928..95512	-	194	55377045	guaB5	rrnAC0114	-	inosine-5'-monophosphate dehydrogenase related protein V
104	 58.64	-1	95571..96479	-	302	55377046	-	rrnAC0115	-	GTP cyclohydrolase III
105	 61.06	0	96454..96792	-	112	55377047	-	rrnAC0116	-	hypothetical protein
106	 61.00	0	96848..97147	-	99	55377048	-	rrnAC0117	-	hypothetical protein
107	 60.59	0	97193..98575	-	460	55377049	-	rrnAC0119	-	hypothetical protein
108	 62.95	0	99064..99816	-	250	55377050	-	rrnAC0120	-	hypothetical protein
109	 64.27	0	99917..100459	+	180	55377051	-	rrnAC0121	-	hypothetical protein
110	 62.04	0	100460..101086	-	208	55377052	udg2	rrnAC0123	-	uracil DNA glycosylase superfamily protein
111	 65.08	0	101088..102287	-	399	55377053	aroC	rrnAC0124	-	chorismate synthase
112	 62.55	0	102336..102578	-	80	55377054	-	rrnAC0126	-	hypothetical protein
113	 67.29	+1	102834..104123	-	429	55377055	aroA	rrnAC0127	-	3-phosphoshikimate 1-carboxyvinyltransferase
114	 66.67	0	104218..104922	+	234	55377056	sdr	rrnAC0128	-	short chain dehydrogenase
115	 65.63	0	104968..105834	+	288	55377057	zip	rrnAC0129	-	zinc transporter
116	 60.09	0	105849..107246	-	465	55377058	htl	rrnAC0130	-	signal-transducing histidine kinase-like
117	 61.77	0	107253..108743	-	496	55377059	-	rrnAC0131	-	RecA/helicase-like
118	 63.33	0	109004..110293	-	429	55377060	-	rrnAC0132	-	lysine-ketoglutarate reductase/saccharopine dehydrogenase
119	 65.63	0	110356..110742	-	128	55377061	-	rrnAC0133	-	hypothetical protein
120	 63.70	0	110908..112557	+	549	55377062	ilvB1	rrnAC0134	-	acetolactate synthase large subunit
121	 62.11	0	112592..113293	+	233	55377063	-	rrnAC0135	-	hypothetical protein
122	 57.94	-1	113302..113427	-	41	55377064	-	rrnAC0136	-	hypothetical protein
123	 65.66	0	113484..114476	+	330	55377065	cysK2	rrnAC0137	-	cysteine synthase
124	 64.22	0	114511..115122	-	203	55377066	eif2B1	rrnAC0138	-	translation initiation factor IF-2 subunit beta
125	 61.68	0	115220..115600	+	126	55377067	-	rrnAC0139	-	hypothetical protein
126	 64.31	0	115611..116330	+	239	55377068	-	rrnAC0140	-	hypothetical protein
127	 66.06	0	116463..118286	-	607	55377069	sdhA2	rrnAC0141	-	succinate dehydrogenase flavoprotein subunit
128	 63.89	0	118418..119893	-	491	55377070	nhaC2	rrnAC0143	-	Na+/H+ antiporter
129	 67.62	+1	120096..120938	-	280	55377071	potA3	rrnAC0145	-	spermidine/putrescine ABC transporter ATP-binding protein
130	 66.78	0	121246..123054	-	602	55377072	cysT2	rrnAC0146	-	sulfate transport system permease protein
131	 64.44	0	123115..124239	-	374	55377073	tppA	rrnAC0147	-	thiamine-binding periplasmic protein precursor-like
132	 63.31	0	124304..124720	-	138	55377074	-	rrnAC0148	-	hypothetical protein
133	 63.79	0	124819..125931	+	370	55377075	pdhA1	rrnAC0149	-	pyruvate dehydrogenase E1 component alpha subunit
134	 63.81	0	126250..126774	-	174	55377076	-	rrnAC0150	-	hypothetical protein
135	 67.32	+1	126829..128196	+	455	55377077	-	rrnAC0151	-	hypothetical protein
136	 63.05	0	128785..129033	-	82	55377078	-	rrnAC0153	-	hypothetical protein
137	 58.97	0	129044..129199	-	51	55377079	-	rrnAC0154	-	hypothetical protein
138	 63.17	0	129273..131189	-	638	55377080	epf2b	rrnAC0155	-	mRNA 3'-end processing factor-like
139	 62.11	0	131455..131937	+	160	55377081	-	rrnAC0157	-	hypothetical protein
140	 64.54	0	132661..133740	-	359	55377082	-	rrnAC0158	-	hypothetical protein
141	 63.27	0	133799..134386	-	195	55377083	-	rrnAC0159	-	hypothetical protein
142	 66.96	+1	134479..135162	-	227	55377084	-	rrnAC0160	-	hypothetical protein
143	 62.70	0	135237..135740	-	167	55377085	-	rrnAC0161	-	putative transcriptional regulator
144	 62.33	0	136046..136876	+	276	55377086	-	rrnAC0163	-	hypothetical protein
145	 63.87	0	136971..137756	+	261	55377087	-	rrnAC0165	-	hypothetical protein
146	 63.78	0	137879..139333	+	484	55377088	proS	rrnAC0166	-	prolyl-tRNA synthetase
147	 64.05	0	139491..140447	-	318	55377089	-	rrnAC0167	-	putative patatin-like phospholipase
148	 56.41	-1	140905..141333	+	142	55377090	-	rrnAC0168	-	hypothetical protein
149	 64.07	0	141488..146035	+	1515	55377091	gltB	rrnAC0169	-	glutamate synthase large subunit
150	 60.91	0	146216..147187	+	323	55377092	-	rrnAC0170	-	hypothetical protein
151	 65.83	0	147255..148334	+	359	55377093	-	rrnAC0171	-	hypothetical protein
152	 63.40	0	148338..149408	-	356	55377094	-	rrnAC0172	-	transcription regulator
153	 64.76	0	149592..152156	-	854	55377095	bglX-1	rrnAC0173	-	beta-glucosidase
154	 65.72	0	152308..153366	+	352	55377096	gldA	rrnAC0175	-	glycerol-1-phosphate dehydrogenase [NAD(P)]
155	 65.96	0	153363..153926	-	187	55377097	-	rrnAC0176	-	hypothetical protein
156	 65.97	0	153999..155723	-	574	55377098	pop	rrnAC0178	-	prolyl oligopeptidase family protein
157	 64.21	0	155890..156948	+	352	55377099	rfbU	rrnAC0179	-	LPS biosynthesis protein
158	 64.11	0	156997..159150	-	717	55377100	nhaC5	rrnAC0180	-	Na+/H+ antiporter
159	 65.68	0	159292..160704	+	470	55377101	rad25-1	rrnAC0181	-	DNA repair helicase
160	 67.82	+1	160717..161325	-	202	55377102	ubiE2	rrnAC0182	-	ubiquinone/menaquinone biosynthesis methyltransferase UbiE
161	 59.37	0	161427..162920	-	497	55377103	htr	rrnAC0183	-	heme-based aerotactic transducer HemAT
162	 66.05	0	163058..165502	-	814	55377104	folP	rrnAC0184	-	dihydropteroate synthase
163	 65.55	0	165617..166333	-	238	55377105	-	rrnAC0185	-	hypothetical protein
164	 61.90	0	166949..167935	-	328	55377106	-	rrnAC0187	-	putative transporter
165	 53.76	-2	167925..168017	-	30	55377107	-	rrnAC0188	-	hypothetical protein
166	 64.20	0	168089..169669	-	526	55377108	purH	rrnAC0189	-	bifunctional purine biosynthesis protein PurH
167	 67.03	+1	169815..170369	+	184	55377109	-	rrnAC0190	-	hypothetical protein
168	 62.73	0	170616..171683	+	355	55377110	adh3	rrnAC0191	-	zinc-binding dehydrogenase
169	 64.50	0	171814..173196	+	460	55377111	purB	rrnAC0192	-	adenylosuccinate lyase
170	 64.91	0	173290..174597	+	435	55377112	yfmO2	rrnAC0194	-	multidrug resistance protein-like
171	 64.03	0	174690..175334	+	214	55377113	-	rrnAC0195	-	hypothetical protein
172	 66.49	0	175360..176487	-	375	55377114	argE	rrnAC0196	-	succinyl-diaminopimelate desuccinylase
173	 68.20	+1	176487..177791	-	434	55377115	odc	rrnAC0198	-	ornithine decarboxylase
174	 57.73	-1	177927..178463	-	178	55377116	-	rrnAC0199	-	putative transcriptional regulator
175	 64.49	0	178528..178803	-	91	55377117	-	rrnAC0200	-	hypothetical protein
176	 57.96	-1	178901..180427	-	508	55377118	aldY2	rrnAC0201	-	aldehyde dehydrogenase
177	 69.16	+1	180912..182033	+	373	55377119	-	rrnAC0202	-	hypothetical protein
178	 65.37	0	182062..182679	-	205	55377120	-	rrnAC0203	-	hypothetical protein
179	 65.22	0	182873..183703	-	276	55377122	dapD	rrnAC0204	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
180	 62.77	0	183702..187136	+	1144	55377121	aglA2	rrnAC0205	-	alpha-glucosidase
181	 68.00	+1	187517..188266	-	249	55377123	dapB	rrnAC0206	-	dihydrodipicolinate reductase
182	 63.30	0	188263..189183	-	306	55377124	dapA	rrnAC0207	-	dihydrodipicolinate synthase
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.