IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1249	 62.95	0	1248850..1249629	+	259	55378191	dph5	rrnAC1406	-	diphthine synthase
1250	 60.08	0	1249654..1250655	-	333	55378192	cyo	rrnAC1407	-	cytochrome oxidase subunit I-like
1251	 59.36	0	1250803..1253442	-	879	55378193	-	rrnAC1408	-	hypothetical protein
1252	 60.29	0	1253873..1254625	-	250	55378194	gloA1	rrnAC1409	-	lactoylglutathione lyase
1253	 61.00	0	1254698..1255138	-	146	55378195	-	rrnAC1410	-	hypothetical protein
1254	 58.92	0	1255269..1256378	-	369	55378196	drg	rrnAC1411	-	GTP-binding protein Drg
1255	 58.57	-1	1256528..1256737	+	69	55378197	-	rrnAC1412	-	hypothetical protein
1256	 62.17	0	1256873..1257361	+	162	55378198	rpl11p	rrnAC1414	-	50S ribosomal protein L11P
1257	 61.82	0	1257606..1258244	+	212	55378199	rpl1P	rrnAC1415	-	50S ribosomal protein L1P
1258	 63.42	0	1258246..1259292	+	348	55378200	rplP0	rrnAC1417	-	acidic ribosomal protein P0
1259	 66.38	0	1259310..1259657	+	115	55378201	rpl12p	rrnAC1418	-	50S ribosomal protein L12P
1260	 54.30	-2	1259837..1263646	-	1269	55378202	-	rrnAC1419	-	hypothetical protein
1261	 59.24	0	1264206..1264811	+	201	55378203	-	rrnAC1420	-	hypothetical protein
1262	 61.22	0	1264813..1265400	+	195	55378204	-	rrnAC1421	-	hypothetical protein
1263	 63.00	0	1265550..1266368	+	272	55378205	-	rrnAC1422	-	hypothetical protein
1264	 60.48	0	1266794..1267537	+	247	55378206	-	rrnAC1423	-	hypothetical protein
1265	 61.86	0	1267544..1269268	-	574	55378207	-	rrnAC1424	-	hypothetical protein
1266	 58.18	-1	1269416..1271182	-	588	55378208	-	rrnAC1425	-	hypothetical protein
1267	 64.12	0	1271479..1271949	+	156	55378209	rps15p	rrnAC1426	-	30S ribosomal protein S15P
1268	 73.24	+2	1271950..1273059	+	369	55378210	recJ2	rrnAC1427	-	putative exonuclease Recj
1269	 62.77	0	1273056..1273286	+	76	55378211	-	rrnAC1428	-	hypothetical protein
1270	 61.53	0	1273279..1273920	+	213	55378212	rps3AE	rrnAC1429	-	30S ribosomal protein S3Ae
1271	 64.64	0	1274114..1274557	-	147	55378213	fbr2	rrnAC1430	-	cytochrome-like protein
1272	 68.15	+1	1274647..1275792	-	381	55378214	purK	rrnAC1431	-	phosphoribosylaminoimidazole carboxylase ATP binding subunit
1273	 65.37	0	1275818..1277815	-	665	55378215	dpm5	rrnAC1432	-	dolichyl-phosphate-mannose-protein mannosyltransferase
1274	 66.43	0	1277943..1278356	+	137	55378216	ribE	rrnAC1433	-	67-dimethyl-8-ribityllumazine synthase
1275	 63.48	0	1278353..1279513	+	386	55378217	aspC3	rrnAC1434	-	aspartate aminotransferase
1276	 64.94	0	1279609..1279956	-	115	55378218	atpC2	rrnAC1435	-	ATP synthase subunit C
1277	 65.75	0	1280097..1280531	+	144	55378219	-	rrnAC1436	-	hypothetical protein
1278	 65.77	0	1280568..1281233	-	221	55378220	-	rrnAC1437	-	hypothetical protein
1279	 62.39	0	1281273..1281623	-	116	55378221	taqD	rrnAC1438	-	glycerol-3-phosphate cytidyltransferase
1280	 61.04	0	1281698..1282195	-	165	55378222	-	rrnAC1439	-	hypothetical protein
1281	 64.32	0	1282290..1284203	+	637	55378223	recJ3	rrnAC1441	-	putative exonuclease recJ-like
1282	 65.81	0	1284245..1285870	-	541	55378224	pld	rrnAC1442	-	phospholipase D
1283	 64.59	0	1285913..1287310	-	465	55378226	-	rrnAC1443	-	hypothetical protein
1284	 63.40	0	1287186..1288931	+	581	55378225	xup	rrnAC1444	-	xanthine/uracil permease family protein
1285	 67.12	+1	1289138..1289356	+	72	55378227	-	rrnAC1445	-	hypothetical protein
1286	 64.52	0	1289403..1290053	+	216	55378228	purE	rrnAC1446	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1287	 57.49	-1	1290090..1290623	+	177	55378229	nolB	rrnAC1447	-	NAD(P)H-quinone oxidoreductase chain 3
1288	 61.47	0	1290616..1291308	+	230	55378230	nuoB	rrnAC1448	-	NADH dehydrogenase I B subunit
1289	 63.40	0	1291315..1292997	+	560	55378231	ndHG5	rrnAC1449	-	NADH dehydrogenase/oxidoreductase
1290	 62.16	0	1292997..1294040	+	347	55378232	ndhG4	rrnAC1450	-	NADH dehydrogenase/oxidoreductase
1291	 59.74	0	1294084..1294545	+	153	55378233	nolD	rrnAC1451	-	NADH dehydrogenase/oxidoreductase-like protein
1292	 59.63	0	1294838..1295107	+	89	55378234	ndhG6	rrnAC1452	-	NADH dehydrogenase subunit J
1293	 64.66	0	1295104..1295502	+	132	55378235	-	rrnAC1453	-	hypothetical protein
1294	 59.42	0	1295595..1295801	+	68	55378236	nolC	rrnAC1454	-	NADH dehydrogenase/oxidoreductase-like protein
1295	 63.04	0	1295805..1297898	+	697	55378237	nuoL2	rrnAC1455	-	NADH dehydrogenase I L subunit
1296	 63.41	0	1297899..1299434	+	511	55378238	ndhD	rrnAC1456	-	NADH dehydrogenase subunit 4
1297	 64.54	0	1299435..1300985	+	516	55378239	ndhG3	rrnAC1458	-	NADH dehydrogenase/oxidoreductase
1298	 62.97	0	1301035..1301982	-	315	55378240	-	rrnAC1459	-	metallo-beta-lactamase superfamily protein
1299	 58.52	-1	1302131..1302400	+	89	55378241	-	rrnAC1460	-	hypothetical protein
1300	 41.70	-2	1302957..1303829	-	290	55378242	-	rrnAC1461	-	hypothetical protein
1301	 51.03	-2	1303913..1304155	-	80	55378243	-	rrnAC1462	-	hypothetical protein
1302	 48.15	-2	1304155..1304289	-	44	55378244	-	rrnAC1463	-	hypothetical protein
1303	 46.95	-2	1304717..1305553	+	278	55378245	-	rrnAC1464	-	hypothetical protein
1304	 45.61	-2	1305661..1305774	+	37	55378246	-	rrnAC1465	-	hypothetical protein
1305	 54.85	-1	1305771..1306244	-	157	55378247	-	rrnAC1466	-	hypothetical protein
1306	 54.38	-2	1306241..1307290	-	349	55378248	-	rrnAC1467	-	hypothetical protein
1307	 54.19	-2	1308450..1309475	-	341	55378249	tnp	rrnAC1468	-	phage integrase
1308	 64.27	0	1309746..1310495	+	249	55378250	-	rrnAC1469	-	hypothetical protein
1309	 60.17	0	1310552..1311151	+	199	55378251	trxB2	rrnAC1470	-	thioredoxin reductase
1310	 65.94	0	1311246..1311659	+	137	55378252	doxD5	rrnAC1471	-	terminal quinol oxidase subunit
1311	 59.51	0	1311680..1312294	-	204	55378253	acrR	rrnAC1472	-	AcrR family transcriptional regulator
1312	 66.38	0	1312406..1312753	-	115	55378254	-	rrnAC1473	-	hypothetical protein
1313	 65.87	0	1312808..1313185	-	125	55378255	-	rrnAC1474	-	hypothetical protein
1314	 68.44	+1	1313261..1314502	-	413	55378256	-	rrnAC1475	-	hypothetical protein
1315	 64.71	0	1314593..1315051	+	152	55378257	-	rrnAC1476	-	hypothetical protein
1316	 60.11	0	1315132..1316382	-	416	55378258	fdfT	rrnAC1477	-	farnesyl-diphosphate farnesyltransferase
1317	 64.95	0	1316703..1318040	+	445	55378259	sacB	rrnAC1478	-	levansucrase
1318	 66.81	0	1318085..1320196	-	703	55378260	scrB	rrnAC1479	-	sucrose-6-phosphate hydrolase
1319	 64.52	0	1320836..1321021	+	61	55378261	-	rrnAC1480	-	hypothetical protein
1320	 61.83	0	1321018..1322112	-	364	55378262	-	rrnAC1481	-	hypothetical protein
1321	 58.64	-1	1322253..1322738	-	161	55378263	fapE2	rrnAC1482	-	flagella-related protein E
1322	 62.47	0	1322909..1323814	+	301	55378264	parA4	rrnAC1483	-	chromosome partitioning protein ParA
1323	 64.54	0	1323811..1324797	+	328	55378265	cheW2	rrnAC1484	-	chemotaxis signal transduction protein CheW
1324	 67.63	+1	1324827..1325969	-	380	55378266	yjlD4	rrnAC1485	-	NADH dehydrogenase
1325	 61.83	0	1326078..1327298	+	406	55378267	kinA8	rrnAC1486	-	signal-transducing histidine kinase-like
1326	 65.23	0	1327300..1328274	-	324	55378268	dmd	rrnAC1489	-	diphosphomevalonate decarboxylase
1327	 64.62	0	1328377..1328913	-	178	55378269	cadT	rrnAC1490	-	cobalamin adenosyltransferase
1328	 65.02	0	1329040..1329708	-	222	55378270	msrA2	rrnAC1491	-	peptide methionine sulfoxide reductase MsrA1
1329	 57.31	-1	1329800..1329970	+	56	55378271	-	rrnAC1492	-	hypothetical protein
1330	 62.75	0	1330039..1330242	+	67	55378272	-	rrnAC1493	-	hypothetical protein
1331	 60.98	0	1330281..1330649	+	122	55378273	htlD	rrnAC1494	-	HTR-like protein
1332	 62.91	0	1330646..1334533	-	1295	55378274	oye3	rrnAC1495	-	putative light- and oxygen-sensing transcription regulator
1333	 65.96	0	1334610..1336316	-	568	55378275	nifS	rrnAC1497	-	glycine dehydrogenase subunit 2
1334	 66.15	0	1336270..1337613	-	447	55378276	gcvP1	rrnAC1498	-	glycine dehydrogenase subunit 1
1335	 62.50	0	1337722..1338105	-	127	55378277	gcvH	rrnAC1499	-	glycine cleavage system H protein
1336	 64.94	0	1338102..1339256	-	384	55378278	gcvT2	rrnAC1500	-	glycine cleavage system aminomethyltransferase T
1337	 57.99	-1	1339340..1341136	-	598	55378279	-	rrnAC1501	-	PAS-PAC-PAC sensing his kinase
1338	 61.74	0	1341302..1341748	+	148	55378280	-	rrnAC1502	-	hypothetical protein
1339	 55.56	-1	1341745..1341843	-	32	55378281	-	rrnAC1503	-	hypothetical protein
1340	 65.53	0	1342120..1342647	+	175	55378282	tatD	rrnAC1504	-	TatD related DNase
1341	 60.67	0	1342678..1343577	-	299	55378283	pstB1	rrnAC1505	-	phosphate ABC transporter ATP-binding protein
1342	 64.55	0	1343581..1345281	-	566	55378284	pstA2	rrnAC1507	-	phosphate ABC transporter permease protein
1343	 61.52	0	1345301..1346233	-	310	55378285	pstC1	rrnAC1508	-	phosphate ABC transporter permease protein
1344	 59.27	0	1346285..1347298	-	337	55378286	phoX	rrnAC1509	-	phosphate ABC transporter phosphate-binding protein
1345	 60.26	0	1347606..1348604	+	332	55378287	prp3	rrnAC1510	-	phosphate regulatory protein-like
1346	 62.63	0	1348660..1349031	-	123	55378288	rps8E	rrnAC1511	-	30S ribosomal protein S8e
1347	 63.51	0	1349119..1349562	+	147	55378289	-	rrnAC1512	-	hypothetical protein
1348	 62.61	0	1349562..1349906	+	114	55378290	-	rrnAC1513	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.