IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1210	 64.44	0	1216350..1217024	-	224	55378152	ccdA	rrnAC1367	-	cytochrome c-type biogenesis protein CcdA
1211	 62.66	0	1217078..1217776	+	232	55378153	trp-6	rrnAC1368	-	ABC transporter ATP-binding protein
1212	 62.98	0	1217773..1218450	+	225	55378154	ccmB	rrnAC1369	-	cytochrome C-type biogenesis protein heme exporter protein B
1213	 64.51	0	1218463..1220829	-	788	55378155	ccmF	rrnAC1370	-	cytochrome c-type biogenesis protein CcmF
1214	 58.28	-1	1220826..1221290	-	154	55378156	trxA7	rrnAC1371	-	thioredoxin
1215	 62.39	0	1221340..1222764	-	474	55378157	ccpA	rrnAC1372	-	cytochrome c551 peroxidase
1216	 60.78	0	1222910..1223674	+	254	55378158	ccmC	rrnAC1373	-	heme exporter protein C
1217	 53.66	-2	1223677..1223799	+	40	55378159	-	rrnAC1374	-	hypothetical protein
1218	 62.48	0	1223838..1225367	-	509	55378160	soxA2	rrnAC1375	-	putative sulfite oxidase
1219	 54.98	-1	1225385..1225906	-	173	55378161	ccmE	rrnAC1376	-	cytochrome c-type biogenesis protein CcmE
1220	 59.59	0	1225982..1226758	+	258	55378162	hcp6	rrnAC1377	-	halocyanin precursor-like
1221	 63.37	0	1227027..1228178	-	383	55378163	pan1a	rrnAC1378	-	membrane protein Pan1
1222	 60.32	0	1228390..1228767	+	125	55378164	-	rrnAC1379	-	hypothetical protein
1223	 58.00	-1	1228770..1229069	+	99	55378165	-	rrnAC1380	-	hypothetical protein
1224	 57.58	-1	1229223..1229519	+	98	55378166	-	rrnAC1381	-	hypothetical protein
1225	 66.13	0	1229521..1230834	-	437	55378167	-	rrnAC1382	-	hypothetical protein
1226	 58.19	-1	1230867..1231208	+	113	55378168	-	rrnAC1383	-	hypothetical protein
1227	 60.44	0	1231205..1231477	+	90	55378169	gluTR	rrnAC1384	-	glutamyl-tRNAGlu reductase
1228	 62.58	0	1231557..1231874	-	105	55378170	-	rrnAC1385	-	hypothetical protein
1229	 60.68	0	1231871..1232104	-	77	55378171	-	rrnAC1386	-	hypothetical protein
1230	 63.87	0	1232194..1232730	+	178	55378172	-	rrnAC1387	-	hypothetical protein
1231	 62.16	0	1233042..1233374	+	110	55378173	-	rrnAC1388	-	hypothetical protein
1232	 64.48	0	1233440..1233805	-	121	55378174	-	rrnAC1389	-	hypothetical protein
1233	 67.82	+1	1234135..1236297	+	720	55378175	purL	rrnAC1390	-	phosphoribosylformylglycinamidine synthase II
1234	 59.52	0	1236383..1237600	-	405	55378176	-	rrnAC1391	-	HTR-like protein
1235	 60.31	0	1237604..1238815	-	403	55378177	-	rrnAC1392	-	hypothetical protein
1236	 65.02	0	1238909..1239151	-	80	55378178	-	rrnAC1393	-	hypothetical protein
1237	 62.50	0	1239217..1240032	+	271	55378179	hisF	rrnAC1394	-	imidazole glycerol phosphate synthase subunit hisF
1238	 61.61	0	1240145..1241173	+	342	55378180	-	rrnAC1395	-	hypothetical protein
1239	 60.70	0	1241176..1241460	-	94	55378181	rpoL	rrnAC1396	-	DNA-directed RNA polymerase subunit L
1240	 63.78	0	1241540..1241851	-	103	55378182	-	rrnAC1397	-	putative DNA binding
1241	 66.99	+1	1241848..1243404	-	518	55378184	-	rrnAC1398	-	hypothetical protein
1242	 61.69	0	1243360..1244223	+	287	55378183	cyoC	rrnAC1399	-	cytochrome c oxidase polypeptide III
1243	 59.67	0	1244266..1244508	+	80	55378185	-	rrnAC1400	-	hypothetical protein
1244	 61.32	0	1244563..1245198	+	211	55378186	-	rrnAC1401	-	hypothetical protein
1245	 65.61	0	1245355..1246398	+	347	55378187	adh4	rrnAC1402	-	alcohol dehydrogenase
1246	 61.11	0	1246470..1246775	-	101	55378188	-	rrnAC1403	-	hypothetical protein
1247	 64.73	0	1247294..1247707	-	137	55378189	usp28	rrnAC1404	-	universal stress protein
1248	 63.40	0	1247794..1248774	-	326	55378190	-	rrnAC1405	-	methyltransferase
1249	 62.95	0	1248850..1249629	+	259	55378191	dph5	rrnAC1406	-	diphthine synthase
1250	 60.08	0	1249654..1250655	-	333	55378192	cyo	rrnAC1407	-	cytochrome oxidase subunit I-like
1251	 59.36	0	1250803..1253442	-	879	55378193	-	rrnAC1408	-	hypothetical protein
1252	 60.29	0	1253873..1254625	-	250	55378194	gloA1	rrnAC1409	-	lactoylglutathione lyase
1253	 61.00	0	1254698..1255138	-	146	55378195	-	rrnAC1410	-	hypothetical protein
1254	 58.92	0	1255269..1256378	-	369	55378196	drg	rrnAC1411	-	GTP-binding protein Drg
1255	 58.57	-1	1256528..1256737	+	69	55378197	-	rrnAC1412	-	hypothetical protein
1256	 62.17	0	1256873..1257361	+	162	55378198	rpl11p	rrnAC1414	-	50S ribosomal protein L11P
1257	 61.82	0	1257606..1258244	+	212	55378199	rpl1P	rrnAC1415	-	50S ribosomal protein L1P
1258	 63.42	0	1258246..1259292	+	348	55378200	rplP0	rrnAC1417	-	acidic ribosomal protein P0
1259	 66.38	0	1259310..1259657	+	115	55378201	rpl12p	rrnAC1418	-	50S ribosomal protein L12P
1260	 54.30	-2	1259837..1263646	-	1269	55378202	-	rrnAC1419	-	hypothetical protein
1261	 59.24	0	1264206..1264811	+	201	55378203	-	rrnAC1420	-	hypothetical protein
1262	 61.22	0	1264813..1265400	+	195	55378204	-	rrnAC1421	-	hypothetical protein
1263	 63.00	0	1265550..1266368	+	272	55378205	-	rrnAC1422	-	hypothetical protein
1264	 60.48	0	1266794..1267537	+	247	55378206	-	rrnAC1423	-	hypothetical protein
1265	 61.86	0	1267544..1269268	-	574	55378207	-	rrnAC1424	-	hypothetical protein
1266	 58.18	-1	1269416..1271182	-	588	55378208	-	rrnAC1425	-	hypothetical protein
1267	 64.12	0	1271479..1271949	+	156	55378209	rps15p	rrnAC1426	-	30S ribosomal protein S15P
1268	 73.24	+2	1271950..1273059	+	369	55378210	recJ2	rrnAC1427	-	putative exonuclease Recj
1269	 62.77	0	1273056..1273286	+	76	55378211	-	rrnAC1428	-	hypothetical protein
1270	 61.53	0	1273279..1273920	+	213	55378212	rps3AE	rrnAC1429	-	30S ribosomal protein S3Ae
1271	 64.64	0	1274114..1274557	-	147	55378213	fbr2	rrnAC1430	-	cytochrome-like protein
1272	 68.15	+1	1274647..1275792	-	381	55378214	purK	rrnAC1431	-	phosphoribosylaminoimidazole carboxylase ATP binding subunit
1273	 65.37	0	1275818..1277815	-	665	55378215	dpm5	rrnAC1432	-	dolichyl-phosphate-mannose-protein mannosyltransferase
1274	 66.43	0	1277943..1278356	+	137	55378216	ribE	rrnAC1433	-	67-dimethyl-8-ribityllumazine synthase
1275	 63.48	0	1278353..1279513	+	386	55378217	aspC3	rrnAC1434	-	aspartate aminotransferase
1276	 64.94	0	1279609..1279956	-	115	55378218	atpC2	rrnAC1435	-	ATP synthase subunit C
1277	 65.75	0	1280097..1280531	+	144	55378219	-	rrnAC1436	-	hypothetical protein
1278	 65.77	0	1280568..1281233	-	221	55378220	-	rrnAC1437	-	hypothetical protein
1279	 62.39	0	1281273..1281623	-	116	55378221	taqD	rrnAC1438	-	glycerol-3-phosphate cytidyltransferase
1280	 61.04	0	1281698..1282195	-	165	55378222	-	rrnAC1439	-	hypothetical protein
1281	 64.32	0	1282290..1284203	+	637	55378223	recJ3	rrnAC1441	-	putative exonuclease recJ-like
1282	 65.81	0	1284245..1285870	-	541	55378224	pld	rrnAC1442	-	phospholipase D
1283	 64.59	0	1285913..1287310	-	465	55378226	-	rrnAC1443	-	hypothetical protein
1284	 63.40	0	1287186..1288931	+	581	55378225	xup	rrnAC1444	-	xanthine/uracil permease family protein
1285	 67.12	+1	1289138..1289356	+	72	55378227	-	rrnAC1445	-	hypothetical protein
1286	 64.52	0	1289403..1290053	+	216	55378228	purE	rrnAC1446	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1287	 57.49	-1	1290090..1290623	+	177	55378229	nolB	rrnAC1447	-	NAD(P)H-quinone oxidoreductase chain 3
1288	 61.47	0	1290616..1291308	+	230	55378230	nuoB	rrnAC1448	-	NADH dehydrogenase I B subunit
1289	 63.40	0	1291315..1292997	+	560	55378231	ndHG5	rrnAC1449	-	NADH dehydrogenase/oxidoreductase
1290	 62.16	0	1292997..1294040	+	347	55378232	ndhG4	rrnAC1450	-	NADH dehydrogenase/oxidoreductase
1291	 59.74	0	1294084..1294545	+	153	55378233	nolD	rrnAC1451	-	NADH dehydrogenase/oxidoreductase-like protein
1292	 59.63	0	1294838..1295107	+	89	55378234	ndhG6	rrnAC1452	-	NADH dehydrogenase subunit J
1293	 64.66	0	1295104..1295502	+	132	55378235	-	rrnAC1453	-	hypothetical protein
1294	 59.42	0	1295595..1295801	+	68	55378236	nolC	rrnAC1454	-	NADH dehydrogenase/oxidoreductase-like protein
1295	 63.04	0	1295805..1297898	+	697	55378237	nuoL2	rrnAC1455	-	NADH dehydrogenase I L subunit
1296	 63.41	0	1297899..1299434	+	511	55378238	ndhD	rrnAC1456	-	NADH dehydrogenase subunit 4
1297	 64.54	0	1299435..1300985	+	516	55378239	ndhG3	rrnAC1458	-	NADH dehydrogenase/oxidoreductase
1298	 62.97	0	1301035..1301982	-	315	55378240	-	rrnAC1459	-	metallo-beta-lactamase superfamily protein
1299	 58.52	-1	1302131..1302400	+	89	55378241	-	rrnAC1460	-	hypothetical protein
1300	 41.70	-2	1302957..1303829	-	290	55378242	-	rrnAC1461	-	hypothetical protein
1301	 51.03	-2	1303913..1304155	-	80	55378243	-	rrnAC1462	-	hypothetical protein
1302	 48.15	-2	1304155..1304289	-	44	55378244	-	rrnAC1463	-	hypothetical protein
1303	 46.95	-2	1304717..1305553	+	278	55378245	-	rrnAC1464	-	hypothetical protein
1304	 45.61	-2	1305661..1305774	+	37	55378246	-	rrnAC1465	-	hypothetical protein
1305	 54.85	-1	1305771..1306244	-	157	55378247	-	rrnAC1466	-	hypothetical protein
1306	 54.38	-2	1306241..1307290	-	349	55378248	-	rrnAC1467	-	hypothetical protein
1307	 54.19	-2	1308450..1309475	-	341	55378249	tnp	rrnAC1468	-	phage integrase
1308	 64.27	0	1309746..1310495	+	249	55378250	-	rrnAC1469	-	hypothetical protein
1309	 60.17	0	1310552..1311151	+	199	55378251	trxB2	rrnAC1470	-	thioredoxin reductase
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.