IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1169	 60.85	0	1178689..1178946	+	85	55378111	-	rrnAC1323	-	hypothetical protein
1170	 58.52	-1	1178991..1179125	+	44	55378112	-	rrnAC1324	-	hypothetical protein
1171	 65.60	0	1179186..1180403	-	405	55378113	-	rrnAC1325	-	hypothetical protein
1172	 56.67	-1	1180500..1180649	+	49	55378114	-	rrnAC1326	-	hypothetical protein
1173	 60.51	0	1180649..1180924	+	91	55378115	-	rrnAC1327	-	hypothetical protein
1174	 64.25	0	1180745..1181116	-	123	55378117	-	rrnAC1329	-	hypothetical protein
1175	 66.24	0	1180917..1181150	+	77	55378116	-	rrnAC1328	-	hypothetical protein
1176	 63.00	0	1181159..1181785	-	208	55378118	torD	rrnAC1330	-	cytoplasmic chaperone TorD
1177	 66.01	0	1181782..1183917	-	711	55378119	fixX	rrnAC1331	-	putative ferridoxin protein
1178	 62.70	0	1184151..1187552	+	1133	55378120	fdhF	rrnAC1332	-	formate dehydrogenase alpha subunit
1179	 61.99	0	1187564..1188226	+	220	55378121	fdoH	rrnAC1333	-	formate dehydrogenase-O iron-sulfur subunit
1180	 66.91	+1	1188223..1188633	+	136	55378122	-	rrnAC1334	-	hypothetical protein
1181	 61.96	0	1188630..1189670	+	346	55378123	-	rrnAC1335	-	hypothetical protein
1182	 60.09	0	1189698..1190123	-	141	55378124	-	rrnAC1336	-	hypothetical protein
1183	 61.02	0	1190187..1190363	+	58	55378125	-	rrnAC1337	-	hypothetical protein
1184	 57.91	-1	1190973..1191737	-	254	55378126	arcR-6	rrnAC1338	-	transcription regulator
1185	 58.36	-1	1192059..1192949	-	296	55378127	-	rrnAC1339	-	fumarylacetoacetate hydrolase family protein
1186	 53.07	-2	1193452..1193760	-	102	55378128	-	rrnAC1340	-	hypothetical protein
1187	 63.56	0	1194038..1195837	+	599	55378129	acs	rrnAC1341	-	hypothetical protein
1188	 66.67	0	1196541..1196954	-	137	55378130	-	rrnAC1342	-	hypothetical protein
1189	 57.25	-1	1197034..1197309	+	91	55378131	-	rrnAC1344	-	hypothetical protein
1190	 55.60	-1	1197893..1198570	+	225	55378132	-	rrnAC1345	-	hypothetical protein
1191	 55.58	-1	1199198..1200424	+	408	55378133	kinA1	rrnAC1346	-	signal-transducing histidine kinase-like
1192	 60.20	0	1200773..1201654	-	293	55378134	-	rrnAC1347	-	putative mechanosensitive ion channel
1193	 59.84	0	1201651..1201899	-	82	55378135	-	rrnAC1348	-	hypothetical protein
1194	 68.75	+1	1201952..1202239	-	95	55378136	rnp	rrnAC1349	-	RNAse P Rpr2/Rpp21 subunit
1195	 63.39	0	1202267..1203457	+	396	55378137	gtr-4	rrnAC1350	-	putative sugar transferase
1196	 68.78	+1	1203481..1204803	-	440	55378138	-	rrnAC1351	-	putative sugar transporter
1197	 64.95	0	1204924..1206027	+	367	55378139	gtr-5	rrnAC1352	-	glycosyltransferase
1198	 65.57	0	1206060..1206242	-	60	55378140	-	rrnAC1353	-	hypothetical protein
1199	 65.45	0	1206284..1207429	-	381	55378141	htpX6	rrnAC1354	-	protease HtpX
1200	 66.28	0	1207521..1208798	-	425	55378142	gatA1	rrnAC1355	-	glutamyl-tRNA(Gln) amidotransferase subunit A
1201	 62.01	0	1208799..1209077	-	92	55378143	gatC	rrnAC1356	-	glutamyl-tRNA(Gln) amidotransferase subunit C
1202	 64.00	0	1209303..1210277	+	324	55378144	tfbB	rrnAC1357	-	transcription initiation factor IIB
1203	 61.43	0	1210321..1210797	+	158	55378145	mutT5	rrnAC1358	-	Mut/nudix family protein
1204	 68.86	+1	1210805..1211899	-	364	55378146	asnB	rrnAC1359	-	asparagine synthetase
1205	 66.67	0	1211899..1212396	-	165	55378147	-	rrnAC1361	-	hypothetical protein
1206	 65.45	0	1212835..1214070	-	411	55378148	nirJ	rrnAC1363	-	heme biosynthesis protein
1207	 66.67	0	1214067..1214381	-	104	55378149	-	rrnAC1364	-	hypothetical protein
1208	 65.03	0	1214556..1215716	-	386	55378150	-	rrnAC1365	-	hypothetical protein
1209	 64.43	0	1215739..1216320	+	193	55378151	-	rrnAC1366	-	hypothetical protein
1210	 64.44	0	1216350..1217024	-	224	55378152	ccdA	rrnAC1367	-	cytochrome c-type biogenesis protein CcdA
1211	 62.66	0	1217078..1217776	+	232	55378153	trp-6	rrnAC1368	-	ABC transporter ATP-binding protein
1212	 62.98	0	1217773..1218450	+	225	55378154	ccmB	rrnAC1369	-	cytochrome C-type biogenesis protein heme exporter protein B
1213	 64.51	0	1218463..1220829	-	788	55378155	ccmF	rrnAC1370	-	cytochrome c-type biogenesis protein CcmF
1214	 58.28	-1	1220826..1221290	-	154	55378156	trxA7	rrnAC1371	-	thioredoxin
1215	 62.39	0	1221340..1222764	-	474	55378157	ccpA	rrnAC1372	-	cytochrome c551 peroxidase
1216	 60.78	0	1222910..1223674	+	254	55378158	ccmC	rrnAC1373	-	heme exporter protein C
1217	 53.66	-2	1223677..1223799	+	40	55378159	-	rrnAC1374	-	hypothetical protein
1218	 62.48	0	1223838..1225367	-	509	55378160	soxA2	rrnAC1375	-	putative sulfite oxidase
1219	 54.98	-1	1225385..1225906	-	173	55378161	ccmE	rrnAC1376	-	cytochrome c-type biogenesis protein CcmE
1220	 59.59	0	1225982..1226758	+	258	55378162	hcp6	rrnAC1377	-	halocyanin precursor-like
1221	 63.37	0	1227027..1228178	-	383	55378163	pan1a	rrnAC1378	-	membrane protein Pan1
1222	 60.32	0	1228390..1228767	+	125	55378164	-	rrnAC1379	-	hypothetical protein
1223	 58.00	-1	1228770..1229069	+	99	55378165	-	rrnAC1380	-	hypothetical protein
1224	 57.58	-1	1229223..1229519	+	98	55378166	-	rrnAC1381	-	hypothetical protein
1225	 66.13	0	1229521..1230834	-	437	55378167	-	rrnAC1382	-	hypothetical protein
1226	 58.19	-1	1230867..1231208	+	113	55378168	-	rrnAC1383	-	hypothetical protein
1227	 60.44	0	1231205..1231477	+	90	55378169	gluTR	rrnAC1384	-	glutamyl-tRNAGlu reductase
1228	 62.58	0	1231557..1231874	-	105	55378170	-	rrnAC1385	-	hypothetical protein
1229	 60.68	0	1231871..1232104	-	77	55378171	-	rrnAC1386	-	hypothetical protein
1230	 63.87	0	1232194..1232730	+	178	55378172	-	rrnAC1387	-	hypothetical protein
1231	 62.16	0	1233042..1233374	+	110	55378173	-	rrnAC1388	-	hypothetical protein
1232	 64.48	0	1233440..1233805	-	121	55378174	-	rrnAC1389	-	hypothetical protein
1233	 67.82	+1	1234135..1236297	+	720	55378175	purL	rrnAC1390	-	phosphoribosylformylglycinamidine synthase II
1234	 59.52	0	1236383..1237600	-	405	55378176	-	rrnAC1391	-	HTR-like protein
1235	 60.31	0	1237604..1238815	-	403	55378177	-	rrnAC1392	-	hypothetical protein
1236	 65.02	0	1238909..1239151	-	80	55378178	-	rrnAC1393	-	hypothetical protein
1237	 62.50	0	1239217..1240032	+	271	55378179	hisF	rrnAC1394	-	imidazole glycerol phosphate synthase subunit hisF
1238	 61.61	0	1240145..1241173	+	342	55378180	-	rrnAC1395	-	hypothetical protein
1239	 60.70	0	1241176..1241460	-	94	55378181	rpoL	rrnAC1396	-	DNA-directed RNA polymerase subunit L
1240	 63.78	0	1241540..1241851	-	103	55378182	-	rrnAC1397	-	putative DNA binding
1241	 66.99	+1	1241848..1243404	-	518	55378184	-	rrnAC1398	-	hypothetical protein
1242	 61.69	0	1243360..1244223	+	287	55378183	cyoC	rrnAC1399	-	cytochrome c oxidase polypeptide III
1243	 59.67	0	1244266..1244508	+	80	55378185	-	rrnAC1400	-	hypothetical protein
1244	 61.32	0	1244563..1245198	+	211	55378186	-	rrnAC1401	-	hypothetical protein
1245	 65.61	0	1245355..1246398	+	347	55378187	adh4	rrnAC1402	-	alcohol dehydrogenase
1246	 61.11	0	1246470..1246775	-	101	55378188	-	rrnAC1403	-	hypothetical protein
1247	 64.73	0	1247294..1247707	-	137	55378189	usp28	rrnAC1404	-	universal stress protein
1248	 63.40	0	1247794..1248774	-	326	55378190	-	rrnAC1405	-	methyltransferase
1249	 62.95	0	1248850..1249629	+	259	55378191	dph5	rrnAC1406	-	diphthine synthase
1250	 60.08	0	1249654..1250655	-	333	55378192	cyo	rrnAC1407	-	cytochrome oxidase subunit I-like
1251	 59.36	0	1250803..1253442	-	879	55378193	-	rrnAC1408	-	hypothetical protein
1252	 60.29	0	1253873..1254625	-	250	55378194	gloA1	rrnAC1409	-	lactoylglutathione lyase
1253	 61.00	0	1254698..1255138	-	146	55378195	-	rrnAC1410	-	hypothetical protein
1254	 58.92	0	1255269..1256378	-	369	55378196	drg	rrnAC1411	-	GTP-binding protein Drg
1255	 58.57	-1	1256528..1256737	+	69	55378197	-	rrnAC1412	-	hypothetical protein
1256	 62.17	0	1256873..1257361	+	162	55378198	rpl11p	rrnAC1414	-	50S ribosomal protein L11P
1257	 61.82	0	1257606..1258244	+	212	55378199	rpl1P	rrnAC1415	-	50S ribosomal protein L1P
1258	 63.42	0	1258246..1259292	+	348	55378200	rplP0	rrnAC1417	-	acidic ribosomal protein P0
1259	 66.38	0	1259310..1259657	+	115	55378201	rpl12p	rrnAC1418	-	50S ribosomal protein L12P
1260	 54.30	-2	1259837..1263646	-	1269	55378202	-	rrnAC1419	-	hypothetical protein
1261	 59.24	0	1264206..1264811	+	201	55378203	-	rrnAC1420	-	hypothetical protein
1262	 61.22	0	1264813..1265400	+	195	55378204	-	rrnAC1421	-	hypothetical protein
1263	 63.00	0	1265550..1266368	+	272	55378205	-	rrnAC1422	-	hypothetical protein
1264	 60.48	0	1266794..1267537	+	247	55378206	-	rrnAC1423	-	hypothetical protein
1265	 61.86	0	1267544..1269268	-	574	55378207	-	rrnAC1424	-	hypothetical protein
1266	 58.18	-1	1269416..1271182	-	588	55378208	-	rrnAC1425	-	hypothetical protein
1267	 64.12	0	1271479..1271949	+	156	55378209	rps15p	rrnAC1426	-	30S ribosomal protein S15P
1268	 73.24	+2	1271950..1273059	+	369	55378210	recJ2	rrnAC1427	-	putative exonuclease Recj
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.