IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1127	 60.80	0	1138694..1140397	+	567	55378069	mcmA2	rrnAC1275	-	methylmalonyl-CoA mutase subunit alpha
1128	 58.52	-1	1140508..1140777	-	89	55378070	-	rrnAC1276	-	hypothetical protein
1129	 51.61	-2	1140836..1140928	+	30	55378071	-	rrnAC1277	-	hypothetical protein
1130	 61.46	0	1140990..1142774	-	594	55378072	coxA1	rrnAC1278	-	cytochrome c oxidase polypeptide I
1131	 55.56	-1	1142942..1143193	-	83	55378073	-	rrnAC1279	-	hypothetical protein
1132	 62.12	0	1143257..1143652	-	131	55378074	-	rrnAC1280	-	hypothetical protein
1133	 64.35	0	1143679..1146270	+	863	55378075	-	rrnAC1281	-	hypothetical protein
1134	 54.25	-2	1146280..1146585	-	101	55378076	-	rrnAC1282	-	hypothetical protein
1135	 66.30	0	1146764..1148140	+	458	55378077	purA	rrnAC1283	-	adenylosuccinate synthetase
1136	 59.49	0	1148254..1148448	+	64	55378078	-	rrnAC1284	-	hypothetical protein
1137	 63.52	0	1149053..1150132	-	359	55378079	-	rrnAC1285	-	hypothetical protein
1138	 64.73	0	1150798..1151313	+	171	55378080	htpX5	rrnAC1287	-	protease HtpX
1139	 60.26	0	1152192..1152425	+	77	55378081	-	rrnAC1288	-	hypothetical protein
1140	 65.99	0	1152422..1153303	-	293	55378082	-	rrnAC1289	-	hypothetical protein
1141	 62.89	0	1153418..1153576	-	52	55378083	-	rrnAC1290	-	hypothetical protein
1142	 66.46	0	1153792..1154277	+	161	55378084	-	rrnAC1291	-	hypothetical protein
1143	 64.71	0	1154325..1155803	+	492	55378085	cysS	rrnAC1292	-	cysteinyl-tRNA synthetase
1144	 62.77	0	1155909..1156550	+	213	55378086	-	rrnAC1293	-	hypothetical protein
1145	 68.42	+1	1156594..1156764	+	56	55378087	-	rrnAC1295	-	hypothetical protein
1146	 58.25	-1	1157121..1157738	+	205	55378088	corA	rrnAC1296	-	magnesium Mg(2+)/cobalt Co(2+) transport protein
1147	 69.56	+1	1157733..1159082	-	449	55378089	-	rrnAC1297	-	hypothetical protein
1148	 67.97	+1	1159239..1160462	+	407	55378090	moeA2	rrnAC1298	-	molybdopterin biosynthesis protein moeA
1149	 68.25	+1	1160636..1162339	+	567	55378091	moeA3	rrnAC1299	-	molybdopterin biosynthesis protein moeA
1150	 66.01	0	1162503..1163726	+	407	55378092	adh9	rrnAC1300	-	alcohol dehydrogenase
1151	 63.16	0	1163930..1165099	-	389	55378093	yjlD2	rrnAC1301	-	NADH dehydrogenase
1152	 59.55	0	1165371..1166171	-	266	55378094	thuA	rrnAC1302	-	trehalose utilization-related protein
1153	 56.80	-1	1166297..1166671	+	124	55378095	-	rrnAC1303	-	transcription regulator
1154	 60.83	0	1166718..1167128	+	136	55378096	-	rrnAC1304	-	hypothetical protein
1155	 59.65	0	1167202..1167600	-	132	55378097	-	rrnAC1305	-	hypothetical protein
1156	 62.96	0	1167810..1168052	+	80	55378098	-	rrnAC1307	-	putative transcriptional regulator
1157	 57.89	-1	1168063..1168461	+	132	55378099	-	rrnAC1308	-	glutaredoxin
1158	 58.89	0	1168483..1168662	-	59	55378100	-	rrnAC1309	-	hypothetical protein
1159	 62.35	0	1168836..1170758	+	640	55378101	epf2a	rrnAC1310	-	mRNA 3'-end processing factor-like
1160	 61.44	0	1170767..1171780	-	337	55378102	recJ1	rrnAC1311	-	RecJ exonuclease
1161	 63.35	0	1171836..1172921	-	361	55378103	cysT3	rrnAC1312	-	sulfate transporter family permease
1162	 65.19	0	1172973..1174055	-	360	55378104	moaA	rrnAC1314	-	molybdenum cofactor biosynthesis protein A
1163	 65.28	0	1174162..1174881	+	239	55378105	-	rrnAC1316	-	hypothetical protein
1164	 64.69	0	1174909..1175514	-	201	55378106	mobA	rrnAC1317	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1165	 68.58	+1	1175593..1177365	+	590	55378107	aor2	rrnAC1318	-	aldehyde ferredoxin oxidoreductase
1166	 66.92	+1	1177362..1178150	+	262	55378108	-	rrnAC1319	-	hypothetical protein
1167	 60.00	0	1178166..1178465	+	99	55378109	-	rrnAC1321	-	hypothetical protein
1168	 60.42	0	1178462..1178605	+	47	55378110	-	rrnAC1322	-	hypothetical protein
1169	 60.85	0	1178689..1178946	+	85	55378111	-	rrnAC1323	-	hypothetical protein
1170	 58.52	-1	1178991..1179125	+	44	55378112	-	rrnAC1324	-	hypothetical protein
1171	 65.60	0	1179186..1180403	-	405	55378113	-	rrnAC1325	-	hypothetical protein
1172	 56.67	-1	1180500..1180649	+	49	55378114	-	rrnAC1326	-	hypothetical protein
1173	 60.51	0	1180649..1180924	+	91	55378115	-	rrnAC1327	-	hypothetical protein
1174	 64.25	0	1180745..1181116	-	123	55378117	-	rrnAC1329	-	hypothetical protein
1175	 66.24	0	1180917..1181150	+	77	55378116	-	rrnAC1328	-	hypothetical protein
1176	 63.00	0	1181159..1181785	-	208	55378118	torD	rrnAC1330	-	cytoplasmic chaperone TorD
1177	 66.01	0	1181782..1183917	-	711	55378119	fixX	rrnAC1331	-	putative ferridoxin protein
1178	 62.70	0	1184151..1187552	+	1133	55378120	fdhF	rrnAC1332	-	formate dehydrogenase alpha subunit
1179	 61.99	0	1187564..1188226	+	220	55378121	fdoH	rrnAC1333	-	formate dehydrogenase-O iron-sulfur subunit
1180	 66.91	+1	1188223..1188633	+	136	55378122	-	rrnAC1334	-	hypothetical protein
1181	 61.96	0	1188630..1189670	+	346	55378123	-	rrnAC1335	-	hypothetical protein
1182	 60.09	0	1189698..1190123	-	141	55378124	-	rrnAC1336	-	hypothetical protein
1183	 61.02	0	1190187..1190363	+	58	55378125	-	rrnAC1337	-	hypothetical protein
1184	 57.91	-1	1190973..1191737	-	254	55378126	arcR-6	rrnAC1338	-	transcription regulator
1185	 58.36	-1	1192059..1192949	-	296	55378127	-	rrnAC1339	-	fumarylacetoacetate hydrolase family protein
1186	 53.07	-2	1193452..1193760	-	102	55378128	-	rrnAC1340	-	hypothetical protein
1187	 63.56	0	1194038..1195837	+	599	55378129	acs	rrnAC1341	-	hypothetical protein
1188	 66.67	0	1196541..1196954	-	137	55378130	-	rrnAC1342	-	hypothetical protein
1189	 57.25	-1	1197034..1197309	+	91	55378131	-	rrnAC1344	-	hypothetical protein
1190	 55.60	-1	1197893..1198570	+	225	55378132	-	rrnAC1345	-	hypothetical protein
1191	 55.58	-1	1199198..1200424	+	408	55378133	kinA1	rrnAC1346	-	signal-transducing histidine kinase-like
1192	 60.20	0	1200773..1201654	-	293	55378134	-	rrnAC1347	-	putative mechanosensitive ion channel
1193	 59.84	0	1201651..1201899	-	82	55378135	-	rrnAC1348	-	hypothetical protein
1194	 68.75	+1	1201952..1202239	-	95	55378136	rnp	rrnAC1349	-	RNAse P Rpr2/Rpp21 subunit
1195	 63.39	0	1202267..1203457	+	396	55378137	gtr-4	rrnAC1350	-	putative sugar transferase
1196	 68.78	+1	1203481..1204803	-	440	55378138	-	rrnAC1351	-	putative sugar transporter
1197	 64.95	0	1204924..1206027	+	367	55378139	gtr-5	rrnAC1352	-	glycosyltransferase
1198	 65.57	0	1206060..1206242	-	60	55378140	-	rrnAC1353	-	hypothetical protein
1199	 65.45	0	1206284..1207429	-	381	55378141	htpX6	rrnAC1354	-	protease HtpX
1200	 66.28	0	1207521..1208798	-	425	55378142	gatA1	rrnAC1355	-	glutamyl-tRNA(Gln) amidotransferase subunit A
1201	 62.01	0	1208799..1209077	-	92	55378143	gatC	rrnAC1356	-	glutamyl-tRNA(Gln) amidotransferase subunit C
1202	 64.00	0	1209303..1210277	+	324	55378144	tfbB	rrnAC1357	-	transcription initiation factor IIB
1203	 61.43	0	1210321..1210797	+	158	55378145	mutT5	rrnAC1358	-	Mut/nudix family protein
1204	 68.86	+1	1210805..1211899	-	364	55378146	asnB	rrnAC1359	-	asparagine synthetase
1205	 66.67	0	1211899..1212396	-	165	55378147	-	rrnAC1361	-	hypothetical protein
1206	 65.45	0	1212835..1214070	-	411	55378148	nirJ	rrnAC1363	-	heme biosynthesis protein
1207	 66.67	0	1214067..1214381	-	104	55378149	-	rrnAC1364	-	hypothetical protein
1208	 65.03	0	1214556..1215716	-	386	55378150	-	rrnAC1365	-	hypothetical protein
1209	 64.43	0	1215739..1216320	+	193	55378151	-	rrnAC1366	-	hypothetical protein
1210	 64.44	0	1216350..1217024	-	224	55378152	ccdA	rrnAC1367	-	cytochrome c-type biogenesis protein CcdA
1211	 62.66	0	1217078..1217776	+	232	55378153	trp-6	rrnAC1368	-	ABC transporter ATP-binding protein
1212	 62.98	0	1217773..1218450	+	225	55378154	ccmB	rrnAC1369	-	cytochrome C-type biogenesis protein heme exporter protein B
1213	 64.51	0	1218463..1220829	-	788	55378155	ccmF	rrnAC1370	-	cytochrome c-type biogenesis protein CcmF
1214	 58.28	-1	1220826..1221290	-	154	55378156	trxA7	rrnAC1371	-	thioredoxin
1215	 62.39	0	1221340..1222764	-	474	55378157	ccpA	rrnAC1372	-	cytochrome c551 peroxidase
1216	 60.78	0	1222910..1223674	+	254	55378158	ccmC	rrnAC1373	-	heme exporter protein C
1217	 53.66	-2	1223677..1223799	+	40	55378159	-	rrnAC1374	-	hypothetical protein
1218	 62.48	0	1223838..1225367	-	509	55378160	soxA2	rrnAC1375	-	putative sulfite oxidase
1219	 54.98	-1	1225385..1225906	-	173	55378161	ccmE	rrnAC1376	-	cytochrome c-type biogenesis protein CcmE
1220	 59.59	0	1225982..1226758	+	258	55378162	hcp6	rrnAC1377	-	halocyanin precursor-like
1221	 63.37	0	1227027..1228178	-	383	55378163	pan1a	rrnAC1378	-	membrane protein Pan1
1222	 60.32	0	1228390..1228767	+	125	55378164	-	rrnAC1379	-	hypothetical protein
1223	 58.00	-1	1228770..1229069	+	99	55378165	-	rrnAC1380	-	hypothetical protein
1224	 57.58	-1	1229223..1229519	+	98	55378166	-	rrnAC1381	-	hypothetical protein
1225	 66.13	0	1229521..1230834	-	437	55378167	-	rrnAC1382	-	hypothetical protein
1226	 58.19	-1	1230867..1231208	+	113	55378168	-	rrnAC1383	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.