IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1079	 64.47	0	1088640..1089593	+	317	55378021	-	rrnAC1221	-	hypothetical protein
1080	 63.80	0	1089590..1090531	+	313	55378022	moxR4	rrnAC1222	-	methanol dehydrogenase regulatory protein
1081	 63.49	0	1090572..1091453	+	293	55378023	-	rrnAC1223	-	hypothetical protein
1082	 61.32	0	1091475..1091942	-	155	55378024	pyrI	rrnAC1224	-	aspartate carbamoyltransferase regulatory subunit
1083	 64.37	0	1091939..1092853	-	304	55378025	pyrB	rrnAC1225	-	aspartate carbamoyltransferase catalytic subunit
1084	 63.13	0	1093012..1094169	-	385	55378026	-	rrnAC1226	-	hypothetical protein
1085	 65.55	0	1094363..1094989	+	208	55378027	minD2	rrnAC1227	-	cell division inhibitor MinD-like
1086	 62.38	0	1095018..1095647	+	209	55378028	-	rrnAC1228	-	hypothetical protein
1087	 64.18	0	1095650..1095850	-	66	55378029	-	rrnAC1229	-	hypothetical protein
1088	 61.80	0	1096017..1096961	-	314	55378030	slyD	rrnAC1230	-	peptidyl-prolyl cis-trans isomerase
1089	 67.15	+1	1097041..1098069	-	342	55378031	ilvA1	rrnAC1231	-	threonine dehydratase
1090	 60.22	0	1098150..1098692	+	180	55378032	cytH	rrnAC1232	-	adenylate cyclase
1091	 60.68	0	1098752..1099954	+	400	55378033	metK	rrnAC1233	-	S-adenosylmethionine synthetase
1092	 63.55	0	1100002..1101189	+	395	55378034	thiI	rrnAC1234	-	thiamine biosynthesis protein ThiI
1093	 62.04	0	1101217..1101756	+	179	55378035	-	rrnAC1235	-	hypothetical protein
1094	 62.28	0	1101790..1102701	-	303	55378036	cysK1	rrnAC1236	-	cysteine synthase
1095	 56.19	-1	1102802..1103221	-	139	55378037	nikR	rrnAC1238	-	putative nickel responsive regulator
1096	 51.04	-2	1107450..1107545	+	31	55378038	-	rrnAC1240	-	hypothetical protein
1097	 58.33	-1	1109077..1109340	-	87	55378039	eif1A2	rrnAC1241	-	translation initiation factor IF-1A
1098	 55.27	-1	1109527..1109763	-	78	55378040	-	rrnAC1242	-	hypothetical protein
1099	 47.46	-2	1110044..1110220	+	58	55378041	-	rrnAC1243	-	hypothetical protein
1100	 57.58	-1	1110480..1111040	-	186	55378042	-	rrnAC1244	-	hypothetical protein
1101	 58.28	-1	1111037..1111501	-	154	55378043	-	rrnAC1245	-	hypothetical protein
1102	 58.59	-1	1111498..1112388	-	296	55378044	-	rrnAC1246	-	hypothetical protein
1103	 61.55	0	1112382..1112948	-	188	55378045	-	rrnAC1247	-	hypothetical protein
1104	 58.10	-1	1112951..1113487	-	178	55378046	-	rrnAC1248	-	hypothetical protein
1105	 58.76	0	1113545..1115581	-	678	55378047	-	rrnAC1249	-	hypothetical protein
1106	 56.44	-1	1115578..1118070	-	830	55378048	gspE2	rrnAC1250	-	type II secretion system protein
1107	 62.91	0	1118208..1119353	-	381	55378049	aspB1	rrnAC1251	-	aspartate aminotransferase
1108	 59.80	0	1119350..1119844	-	164	55378050	lrp	rrnAC1252	-	leucine responsive regulatory protein
1109	 56.61	-1	1119917..1120294	+	125	55378051	-	rrnAC1253	-	hypothetical protein
1110	 59.05	0	1120368..1120958	+	196	55378052	-	rrnAC1254	-	hypothetical protein
1111	 49.69	-2	1121202..1121360	-	52	55378053	-	rrnAC1255	-	hypothetical protein
1112	 59.11	0	1121498..1122595	+	365	55378054	-	rrnAC1256	-	hypothetical protein
1113	 63.98	0	1122646..1123314	+	222	55378055	-	rrnAC1257	-	caffeoyl-CoA O-methyltransferase
1114	 55.89	-1	1123415..1124017	+	200	55378056	cheC2	rrnAC1258	-	chemotaxis protein CheC
1115	 61.46	0	1124120..1125772	+	550	55378057	alkK2	rrnAC1259	-	medium-chain-fatty-acid-CoA ligase
1116	 61.11	0	1125806..1126579	-	257	55378058	-	rrnAC1260	-	hypothetical protein
1117	 62.27	0	1126679..1127860	+	393	55378059	acdD	rrnAC1261	-	acyl-CoA dehydrogenase
1118	 55.00	-1	1128689..1130017	-	442	55378060	cdc6h	rrnAC1262	-	cell division control protein 6 homolog 2
1119	 62.53	0	1130534..1131427	+	297	55378061	-	rrnAC1263	-	hypothetical protein
1120	 59.02	0	1131444..1131626	-	60	55378062	-	rrnAC1264	-	hypothetical protein
1121	 60.56	0	1131696..1132415	-	239	55378063	-	rrnAC1266	-	hypothetical protein
1122	 62.56	0	1132684..1134582	+	632	55378064	korA	rrnAC1267	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
1123	 62.09	0	1134586..1135524	+	312	55378065	korB	rrnAC1268	-	putative 2-ketoglutarate ferredoxin oxidoreductase (beta)
1124	 59.44	0	1135609..1136037	+	142	55378066	asnC2	rrnAC1269	-	AsnC family transcriptional regulator
1125	 64.22	0	1136073..1137788	+	571	55378067	-	rrnAC1272	-	hypothetical protein
1126	 62.37	0	1137827..1138618	+	263	55378068	guaB2	rrnAC1274	-	inosine monophosphate dehydrogenase/GMP reductase
1127	 60.80	0	1138694..1140397	+	567	55378069	mcmA2	rrnAC1275	-	methylmalonyl-CoA mutase subunit alpha
1128	 58.52	-1	1140508..1140777	-	89	55378070	-	rrnAC1276	-	hypothetical protein
1129	 51.61	-2	1140836..1140928	+	30	55378071	-	rrnAC1277	-	hypothetical protein
1130	 61.46	0	1140990..1142774	-	594	55378072	coxA1	rrnAC1278	-	cytochrome c oxidase polypeptide I
1131	 55.56	-1	1142942..1143193	-	83	55378073	-	rrnAC1279	-	hypothetical protein
1132	 62.12	0	1143257..1143652	-	131	55378074	-	rrnAC1280	-	hypothetical protein
1133	 64.35	0	1143679..1146270	+	863	55378075	-	rrnAC1281	-	hypothetical protein
1134	 54.25	-2	1146280..1146585	-	101	55378076	-	rrnAC1282	-	hypothetical protein
1135	 66.30	0	1146764..1148140	+	458	55378077	purA	rrnAC1283	-	adenylosuccinate synthetase
1136	 59.49	0	1148254..1148448	+	64	55378078	-	rrnAC1284	-	hypothetical protein
1137	 63.52	0	1149053..1150132	-	359	55378079	-	rrnAC1285	-	hypothetical protein
1138	 64.73	0	1150798..1151313	+	171	55378080	htpX5	rrnAC1287	-	protease HtpX
1139	 60.26	0	1152192..1152425	+	77	55378081	-	rrnAC1288	-	hypothetical protein
1140	 65.99	0	1152422..1153303	-	293	55378082	-	rrnAC1289	-	hypothetical protein
1141	 62.89	0	1153418..1153576	-	52	55378083	-	rrnAC1290	-	hypothetical protein
1142	 66.46	0	1153792..1154277	+	161	55378084	-	rrnAC1291	-	hypothetical protein
1143	 64.71	0	1154325..1155803	+	492	55378085	cysS	rrnAC1292	-	cysteinyl-tRNA synthetase
1144	 62.77	0	1155909..1156550	+	213	55378086	-	rrnAC1293	-	hypothetical protein
1145	 68.42	+1	1156594..1156764	+	56	55378087	-	rrnAC1295	-	hypothetical protein
1146	 58.25	-1	1157121..1157738	+	205	55378088	corA	rrnAC1296	-	magnesium Mg(2+)/cobalt Co(2+) transport protein
1147	 69.56	+1	1157733..1159082	-	449	55378089	-	rrnAC1297	-	hypothetical protein
1148	 67.97	+1	1159239..1160462	+	407	55378090	moeA2	rrnAC1298	-	molybdopterin biosynthesis protein moeA
1149	 68.25	+1	1160636..1162339	+	567	55378091	moeA3	rrnAC1299	-	molybdopterin biosynthesis protein moeA
1150	 66.01	0	1162503..1163726	+	407	55378092	adh9	rrnAC1300	-	alcohol dehydrogenase
1151	 63.16	0	1163930..1165099	-	389	55378093	yjlD2	rrnAC1301	-	NADH dehydrogenase
1152	 59.55	0	1165371..1166171	-	266	55378094	thuA	rrnAC1302	-	trehalose utilization-related protein
1153	 56.80	-1	1166297..1166671	+	124	55378095	-	rrnAC1303	-	transcription regulator
1154	 60.83	0	1166718..1167128	+	136	55378096	-	rrnAC1304	-	hypothetical protein
1155	 59.65	0	1167202..1167600	-	132	55378097	-	rrnAC1305	-	hypothetical protein
1156	 62.96	0	1167810..1168052	+	80	55378098	-	rrnAC1307	-	putative transcriptional regulator
1157	 57.89	-1	1168063..1168461	+	132	55378099	-	rrnAC1308	-	glutaredoxin
1158	 58.89	0	1168483..1168662	-	59	55378100	-	rrnAC1309	-	hypothetical protein
1159	 62.35	0	1168836..1170758	+	640	55378101	epf2a	rrnAC1310	-	mRNA 3'-end processing factor-like
1160	 61.44	0	1170767..1171780	-	337	55378102	recJ1	rrnAC1311	-	RecJ exonuclease
1161	 63.35	0	1171836..1172921	-	361	55378103	cysT3	rrnAC1312	-	sulfate transporter family permease
1162	 65.19	0	1172973..1174055	-	360	55378104	moaA	rrnAC1314	-	molybdenum cofactor biosynthesis protein A
1163	 65.28	0	1174162..1174881	+	239	55378105	-	rrnAC1316	-	hypothetical protein
1164	 64.69	0	1174909..1175514	-	201	55378106	mobA	rrnAC1317	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1165	 68.58	+1	1175593..1177365	+	590	55378107	aor2	rrnAC1318	-	aldehyde ferredoxin oxidoreductase
1166	 66.92	+1	1177362..1178150	+	262	55378108	-	rrnAC1319	-	hypothetical protein
1167	 60.00	0	1178166..1178465	+	99	55378109	-	rrnAC1321	-	hypothetical protein
1168	 60.42	0	1178462..1178605	+	47	55378110	-	rrnAC1322	-	hypothetical protein
1169	 60.85	0	1178689..1178946	+	85	55378111	-	rrnAC1323	-	hypothetical protein
1170	 58.52	-1	1178991..1179125	+	44	55378112	-	rrnAC1324	-	hypothetical protein
1171	 65.60	0	1179186..1180403	-	405	55378113	-	rrnAC1325	-	hypothetical protein
1172	 56.67	-1	1180500..1180649	+	49	55378114	-	rrnAC1326	-	hypothetical protein
1173	 60.51	0	1180649..1180924	+	91	55378115	-	rrnAC1327	-	hypothetical protein
1174	 64.25	0	1180745..1181116	-	123	55378117	-	rrnAC1329	-	hypothetical protein
1175	 66.24	0	1180917..1181150	+	77	55378116	-	rrnAC1328	-	hypothetical protein
1176	 63.00	0	1181159..1181785	-	208	55378118	torD	rrnAC1330	-	cytoplasmic chaperone TorD
1177	 66.01	0	1181782..1183917	-	711	55378119	fixX	rrnAC1331	-	putative ferridoxin protein
1178	 62.70	0	1184151..1187552	+	1133	55378120	fdhF	rrnAC1332	-	formate dehydrogenase alpha subunit
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.