IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1043	 59.14	0	1053232..1053417	-	61	55377985	-	rrnAC1179	-	hypothetical protein
1044	 63.86	0	1054055..1054624	+	189	55377986	mutT1	rrnAC1180	-	Mut/nudix family protein
1045	 65.70	0	1054644..1055468	-	274	55377987	-	rrnAC1181	-	hypothetical protein
1046	 63.76	0	1055766..1057208	-	480	55377988	thiC	rrnAC1182	-	thiamine biosynthesis protein ThiC
1047	 63.83	0	1057326..1058207	+	293	55377989	-	rrnAC1183	-	hypothetical protein
1048	 65.67	0	1058182..1058982	+	266	55377990	cysT1	rrnAC1184	-	sulfate transport system permease protein
1049	 64.13	0	1059014..1059841	-	275	55377991	moaE	rrnAC1186	-	molybdenum cofactor biosynthesis protein
1050	 61.39	0	1059915..1060388	-	157	55377992	moaC	rrnAC1187	-	putative molybdenum cofactor biosynthesis protein C
1051	 66.19	0	1060433..1061068	-	211	55377993	moaB1	rrnAC1188	-	molybdenum cofactor biosynthesis protein B
1052	 62.18	0	1061176..1061688	-	170	55377994	-	rrnAC1189	-	hypothetical protein
1053	 59.43	0	1061828..1062145	-	105	55377995	-	rrnAC1190	-	hypothetical protein
1054	 61.86	0	1062201..1062866	-	221	55377996	-	rrnAC1191	-	metal-dependent phosphohydrolase
1055	 62.27	0	1062952..1063611	-	219	55377997	boa	rrnAC1193	-	bacterio-opsin activator-like protein
1056	 64.24	0	1063791..1064366	+	191	55377998	-	rrnAC1194	-	hypothetical protein
1057	 65.91	0	1064363..1065019	+	218	55377999	petA	rrnAC1195	-	putative Rieske iron-sulfur protein
1058	 65.59	0	1065019..1066413	+	464	55378000	petB2	rrnAC1196	-	cytochrome B6
1059	 66.67	0	1066410..1066592	+	60	55378001	-	rrnAC1197	-	hypothetical protein
1060	 64.64	0	1066585..1069443	+	952	55378002	narG	rrnAC1199	-	nitrate reductase alpha chain
1061	 64.35	0	1069440..1070516	+	358	55378003	narH	rrnAC1200	-	nitrate reductase beta chain
1062	 64.47	0	1070509..1070736	+	75	55378004	-	rrnAC1202	-	hypothetical protein
1063	 69.18	+1	1070729..1071562	+	277	55378005	-	rrnAC1203	-	hypothetical protein
1064	 66.37	0	1071562..1072242	+	226	55378006	narJ	rrnAC1204	-	chaperone protein
1065	 73.47	+2	1072239..1073090	+	283	55378007	-	rrnAC1205	-	putative ABC-type phosphate transport system permease component
1066	 69.60	+1	1073087..1073938	+	283	55378008	prp	rrnAC1206	-	protein phosphatase
1067	 68.28	+1	1073941..1075179	+	412	55378009	mrp2	rrnAC1208	-	Mrp protein
1068	 66.67	0	1075373..1075984	+	203	55378010	-	rrnAC1209	-	hypothetical protein
1069	 61.85	0	1075992..1077029	-	345	55378011	rbnBN1	rrnAC1210	-	ribonuclease BN-like
1070	 62.07	0	1077252..1077839	-	195	55378012	-	rrnAC1211	-	hypothetical protein
1071	 62.27	0	1077836..1079131	-	431	55378013	moz	rrnAC1213	-	molybdopterin oxidoreductase
1072	 62.33	0	1079131..1079961	-	276	55378014	hmoA	rrnAC1214	-	molybdopterin oxidoreductase
1073	 61.98	0	1079964..1082459	-	831	55378015	dmsA	rrnAC1215	-	dimethylsulfoxide reductase
1074	 57.61	-1	1082452..1082694	-	80	55378016	-	rrnAC1216	-	hypothetical protein
1075	 58.06	-1	1082947..1083585	-	212	55378017	-	rrnAC1217	-	transcription regulator
1076	 67.00	+1	1083795..1085615	+	606	55378018	-	rrnAC1218	-	hypothetical protein
1077	 67.17	+1	1085615..1087981	+	788	55378019	-	rrnAC1219	-	hypothetical protein
1078	 56.60	-1	1088035..1088640	+	201	55378020	-	rrnAC1220	-	hypothetical protein
1079	 64.47	0	1088640..1089593	+	317	55378021	-	rrnAC1221	-	hypothetical protein
1080	 63.80	0	1089590..1090531	+	313	55378022	moxR4	rrnAC1222	-	methanol dehydrogenase regulatory protein
1081	 63.49	0	1090572..1091453	+	293	55378023	-	rrnAC1223	-	hypothetical protein
1082	 61.32	0	1091475..1091942	-	155	55378024	pyrI	rrnAC1224	-	aspartate carbamoyltransferase regulatory subunit
1083	 64.37	0	1091939..1092853	-	304	55378025	pyrB	rrnAC1225	-	aspartate carbamoyltransferase catalytic subunit
1084	 63.13	0	1093012..1094169	-	385	55378026	-	rrnAC1226	-	hypothetical protein
1085	 65.55	0	1094363..1094989	+	208	55378027	minD2	rrnAC1227	-	cell division inhibitor MinD-like
1086	 62.38	0	1095018..1095647	+	209	55378028	-	rrnAC1228	-	hypothetical protein
1087	 64.18	0	1095650..1095850	-	66	55378029	-	rrnAC1229	-	hypothetical protein
1088	 61.80	0	1096017..1096961	-	314	55378030	slyD	rrnAC1230	-	peptidyl-prolyl cis-trans isomerase
1089	 67.15	+1	1097041..1098069	-	342	55378031	ilvA1	rrnAC1231	-	threonine dehydratase
1090	 60.22	0	1098150..1098692	+	180	55378032	cytH	rrnAC1232	-	adenylate cyclase
1091	 60.68	0	1098752..1099954	+	400	55378033	metK	rrnAC1233	-	S-adenosylmethionine synthetase
1092	 63.55	0	1100002..1101189	+	395	55378034	thiI	rrnAC1234	-	thiamine biosynthesis protein ThiI
1093	 62.04	0	1101217..1101756	+	179	55378035	-	rrnAC1235	-	hypothetical protein
1094	 62.28	0	1101790..1102701	-	303	55378036	cysK1	rrnAC1236	-	cysteine synthase
1095	 56.19	-1	1102802..1103221	-	139	55378037	nikR	rrnAC1238	-	putative nickel responsive regulator
1096	 51.04	-2	1107450..1107545	+	31	55378038	-	rrnAC1240	-	hypothetical protein
1097	 58.33	-1	1109077..1109340	-	87	55378039	eif1A2	rrnAC1241	-	translation initiation factor IF-1A
1098	 55.27	-1	1109527..1109763	-	78	55378040	-	rrnAC1242	-	hypothetical protein
1099	 47.46	-2	1110044..1110220	+	58	55378041	-	rrnAC1243	-	hypothetical protein
1100	 57.58	-1	1110480..1111040	-	186	55378042	-	rrnAC1244	-	hypothetical protein
1101	 58.28	-1	1111037..1111501	-	154	55378043	-	rrnAC1245	-	hypothetical protein
1102	 58.59	-1	1111498..1112388	-	296	55378044	-	rrnAC1246	-	hypothetical protein
1103	 61.55	0	1112382..1112948	-	188	55378045	-	rrnAC1247	-	hypothetical protein
1104	 58.10	-1	1112951..1113487	-	178	55378046	-	rrnAC1248	-	hypothetical protein
1105	 58.76	0	1113545..1115581	-	678	55378047	-	rrnAC1249	-	hypothetical protein
1106	 56.44	-1	1115578..1118070	-	830	55378048	gspE2	rrnAC1250	-	type II secretion system protein
1107	 62.91	0	1118208..1119353	-	381	55378049	aspB1	rrnAC1251	-	aspartate aminotransferase
1108	 59.80	0	1119350..1119844	-	164	55378050	lrp	rrnAC1252	-	leucine responsive regulatory protein
1109	 56.61	-1	1119917..1120294	+	125	55378051	-	rrnAC1253	-	hypothetical protein
1110	 59.05	0	1120368..1120958	+	196	55378052	-	rrnAC1254	-	hypothetical protein
1111	 49.69	-2	1121202..1121360	-	52	55378053	-	rrnAC1255	-	hypothetical protein
1112	 59.11	0	1121498..1122595	+	365	55378054	-	rrnAC1256	-	hypothetical protein
1113	 63.98	0	1122646..1123314	+	222	55378055	-	rrnAC1257	-	caffeoyl-CoA O-methyltransferase
1114	 55.89	-1	1123415..1124017	+	200	55378056	cheC2	rrnAC1258	-	chemotaxis protein CheC
1115	 61.46	0	1124120..1125772	+	550	55378057	alkK2	rrnAC1259	-	medium-chain-fatty-acid-CoA ligase
1116	 61.11	0	1125806..1126579	-	257	55378058	-	rrnAC1260	-	hypothetical protein
1117	 62.27	0	1126679..1127860	+	393	55378059	acdD	rrnAC1261	-	acyl-CoA dehydrogenase
1118	 55.00	-1	1128689..1130017	-	442	55378060	cdc6h	rrnAC1262	-	cell division control protein 6 homolog 2
1119	 62.53	0	1130534..1131427	+	297	55378061	-	rrnAC1263	-	hypothetical protein
1120	 59.02	0	1131444..1131626	-	60	55378062	-	rrnAC1264	-	hypothetical protein
1121	 60.56	0	1131696..1132415	-	239	55378063	-	rrnAC1266	-	hypothetical protein
1122	 62.56	0	1132684..1134582	+	632	55378064	korA	rrnAC1267	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
1123	 62.09	0	1134586..1135524	+	312	55378065	korB	rrnAC1268	-	putative 2-ketoglutarate ferredoxin oxidoreductase (beta)
1124	 59.44	0	1135609..1136037	+	142	55378066	asnC2	rrnAC1269	-	AsnC family transcriptional regulator
1125	 64.22	0	1136073..1137788	+	571	55378067	-	rrnAC1272	-	hypothetical protein
1126	 62.37	0	1137827..1138618	+	263	55378068	guaB2	rrnAC1274	-	inosine monophosphate dehydrogenase/GMP reductase
1127	 60.80	0	1138694..1140397	+	567	55378069	mcmA2	rrnAC1275	-	methylmalonyl-CoA mutase subunit alpha
1128	 58.52	-1	1140508..1140777	-	89	55378070	-	rrnAC1276	-	hypothetical protein
1129	 51.61	-2	1140836..1140928	+	30	55378071	-	rrnAC1277	-	hypothetical protein
1130	 61.46	0	1140990..1142774	-	594	55378072	coxA1	rrnAC1278	-	cytochrome c oxidase polypeptide I
1131	 55.56	-1	1142942..1143193	-	83	55378073	-	rrnAC1279	-	hypothetical protein
1132	 62.12	0	1143257..1143652	-	131	55378074	-	rrnAC1280	-	hypothetical protein
1133	 64.35	0	1143679..1146270	+	863	55378075	-	rrnAC1281	-	hypothetical protein
1134	 54.25	-2	1146280..1146585	-	101	55378076	-	rrnAC1282	-	hypothetical protein
1135	 66.30	0	1146764..1148140	+	458	55378077	purA	rrnAC1283	-	adenylosuccinate synthetase
1136	 59.49	0	1148254..1148448	+	64	55378078	-	rrnAC1284	-	hypothetical protein
1137	 63.52	0	1149053..1150132	-	359	55378079	-	rrnAC1285	-	hypothetical protein
1138	 64.73	0	1150798..1151313	+	171	55378080	htpX5	rrnAC1287	-	protease HtpX
1139	 60.26	0	1152192..1152425	+	77	55378081	-	rrnAC1288	-	hypothetical protein
1140	 65.99	0	1152422..1153303	-	293	55378082	-	rrnAC1289	-	hypothetical protein
1141	 62.89	0	1153418..1153576	-	52	55378083	-	rrnAC1290	-	hypothetical protein
1142	 66.46	0	1153792..1154277	+	161	55378084	-	rrnAC1291	-	hypothetical protein
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.