IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
987	 65.09	0	1000751..1001575	+	274	55377929	-	rrnAC1116	-	hypothetical protein
988	 62.15	0	1001599..1002174	-	191	55377930	-	rrnAC1117	-	hypothetical protein
989	 56.58	-1	1002297..1002881	+	194	55377931	hlx1	rrnAC1118	-	HoxA-like transcriptional regulator
990	 62.43	0	1002868..1003551	+	227	55377932	-	rrnAC1119	-	hypothetical protein
991	 61.16	0	1003634..1004377	+	247	55377933	thyX	rrnAC1121	-	thymidylate synthase ThyX
992	 55.83	-1	1004630..1004749	+	39	55377934	-	rrnAC1123	-	hypothetical protein
993	 62.22	0	1004802..1005206	+	134	55377935	eif2B2	rrnAC1124	-	translation initiation factor IF-2 subunit beta
994	 56.67	-1	1005207..1005386	-	59	55377936	-	rrnAC1125	-	hypothetical protein
995	 62.44	0	1005460..1006428	-	322	55377937	tfbH	rrnAC1126	-	transcription initiation factor IIB
996	 58.33	-1	1006943..1007074	-	43	55377938	-	rrnAC1127	-	hypothetical protein
997	 59.65	0	1007087..1007371	-	94	55377939	-	rrnAC1128	-	hypothetical protein
998	 64.95	0	1007473..1008522	+	349	55377940	trxB3	rrnAC1129	-	thioredoxin reductase
999	 62.50	0	1008585..1008872	+	95	55377941	-	rrnAC1130	-	hypothetical protein
1000	 66.36	0	1008889..1009548	-	219	55377942	ribG	rrnAC1131	-	hypothetical protein
1001	 59.26	0	1009593..1010051	-	152	55377943	-	rrnAC1132	-	hypothetical protein
1002	 66.35	0	1010295..1011575	+	426	55377944	rpaA	rrnAC1133	-	replication factor A
1003	 69.28	+1	1011572..1013293	+	573	55377945	-	rrnAC1135	-	hypothetical protein
1004	 67.07	+1	1013342..1014091	+	249	55377946	yhcR1	rrnAC1137	-	phosphoesterase
1005	 64.89	0	1014111..1014617	-	168	55377947	fbp1	rrnAC1138	-	fructose-1,6-bisphosphatase
1006	 65.19	0	1015136..1017970	+	944	55377948	yprA4	rrnAC1139	-	ATP-dependent helicase
1007	 59.68	0	1017994..1018737	-	247	55377949	-	rrnAC1140	-	hypothetical protein
1008	 55.85	-1	1018894..1020030	-	378	55377950	oye	rrnAC1142	-	hypothetical protein
1009	 67.98	+1	1020231..1020839	+	202	55377951	-	rrnAC1143	-	hypothetical protein
1010	 67.92	+1	1020875..1022632	+	585	55377952	mutS3	rrnAC1144	-	DNA mismatch repair protein
1011	 63.87	0	1022638..1023102	-	154	55377953	blp	rrnAC1145	-	bacterio-opsin linked product
1012	 67.31	+1	1023382..1023693	-	103	55377954	-	rrnAC1146	-	hypothetical protein
1013	 64.33	0	1024049..1024219	-	56	55377955	-	rrnAC1147	-	hypothetical protein
1014	 69.02	+1	1024348..1026729	-	793	55377956	ctpB	rrnAC1149	-	cation transporting ATPase
1015	 68.22	+1	1026726..1027499	-	257	55377957	-	rrnAC1150	-	hypothetical protein
1016	 59.32	0	1027501..1027677	-	58	55377958	-	rrnAC1151	-	hypothetical protein
1017	 64.96	0	1027844..1029073	+	409	55377959	hcp5	rrnAC1152	-	halocyanin precursor-like
1018	 58.12	-1	1029078..1029650	+	190	55377960	coxB2	rrnAC1153	-	cytochrome c oxidase subunit II
1019	 62.34	0	1029650..1031338	+	562	55377961	coxA3	rrnAC1154	-	cytochrome c oxidase polypeptide I
1020	 62.30	0	1031362..1031910	+	182	55377962	-	rrnAC1155	-	hypothetical protein
1021	 63.44	0	1031916..1033187	-	423	55377963	-	rrnAC1156	-	hypothetical protein
1022	 62.26	0	1033228..1034361	-	377	55377964	-	rrnAC1157	-	DNA-binding protein
1023	 62.12	0	1034422..1035630	-	402	55377965	-	rrnAC1158	-	protein phosphatase 2C like phosphatase
1024	 60.29	0	1035627..1036865	-	412	55377966	pknA1	rrnAC1159	-	serine/threonine-protein kinase PknA
1025	 63.12	0	1036922..1038106	-	394	55377967	-	rrnAC1160	-	von Willebrand factor type A like metal binding protein
1026	 64.23	0	1038228..1038842	-	204	55377968	-	rrnAC1161	-	hypothetical protein
1027	 62.54	0	1038832..1039947	-	371	55377969	-	rrnAC1162	-	hypothetical protein
1028	 63.22	0	1040044..1040682	-	212	55377970	estA	rrnAC1163	-	phospholipase/carboxylesterase
1029	 54.43	-2	1041238..1041474	+	78	55377971	-	rrnAC1164	-	hypothetical protein
1030	 57.81	-1	1041611..1042084	-	157	55377972	-	rrnAC1165	-	hypothetical protein
1031	 61.94	0	1042335..1043243	+	302	55377973	ogg	rrnAC1166	-	8-oxoguanine DNA glycosylase
1032	 63.04	0	1043297..1043572	+	91	55377974	acyP	rrnAC1167	-	acylphosphatase
1033	 68.54	+1	1043619..1045061	+	480	55377975	-	rrnAC1168	-	hypothetical protein
1034	 63.44	0	1045069..1045935	-	288	55377976	hflX	rrnAC1169	-	GTP-binding protein HflX
1035	 62.23	0	1046564..1048837	-	757	55377977	katG2	rrnAC1171	-	peroxidase/catalase HPI
1036	 62.93	0	1048964..1049311	+	115	55377978	-	rrnAC1172	-	hypothetical protein
1037	 61.04	0	1049327..1050055	-	242	55377979	-	rrnAC1173	-	putative RNA-associated protein
1038	 65.77	0	1050143..1050925	-	260	55377980	psmA4	rrnAC1174	-	proteasome subunit alpha
1039	 64.20	0	1050928..1051413	-	161	55377981	rpp14	rrnAC1175	-	RNaseP subunit 14
1040	 60.99	0	1051524..1051946	-	140	55377982	-	rrnAC1176	-	hypothetical protein
1041	 66.53	0	1052092..1052799	-	235	55377983	rnp30	rrnAC1177	-	ribonuclease P subunit p30
1042	 62.91	0	1052799..1053224	-	141	55377984	-	rrnAC1178	-	hypothetical protein
1043	 59.14	0	1053232..1053417	-	61	55377985	-	rrnAC1179	-	hypothetical protein
1044	 63.86	0	1054055..1054624	+	189	55377986	mutT1	rrnAC1180	-	Mut/nudix family protein
1045	 65.70	0	1054644..1055468	-	274	55377987	-	rrnAC1181	-	hypothetical protein
1046	 63.76	0	1055766..1057208	-	480	55377988	thiC	rrnAC1182	-	thiamine biosynthesis protein ThiC
1047	 63.83	0	1057326..1058207	+	293	55377989	-	rrnAC1183	-	hypothetical protein
1048	 65.67	0	1058182..1058982	+	266	55377990	cysT1	rrnAC1184	-	sulfate transport system permease protein
1049	 64.13	0	1059014..1059841	-	275	55377991	moaE	rrnAC1186	-	molybdenum cofactor biosynthesis protein
1050	 61.39	0	1059915..1060388	-	157	55377992	moaC	rrnAC1187	-	putative molybdenum cofactor biosynthesis protein C
1051	 66.19	0	1060433..1061068	-	211	55377993	moaB1	rrnAC1188	-	molybdenum cofactor biosynthesis protein B
1052	 62.18	0	1061176..1061688	-	170	55377994	-	rrnAC1189	-	hypothetical protein
1053	 59.43	0	1061828..1062145	-	105	55377995	-	rrnAC1190	-	hypothetical protein
1054	 61.86	0	1062201..1062866	-	221	55377996	-	rrnAC1191	-	metal-dependent phosphohydrolase
1055	 62.27	0	1062952..1063611	-	219	55377997	boa	rrnAC1193	-	bacterio-opsin activator-like protein
1056	 64.24	0	1063791..1064366	+	191	55377998	-	rrnAC1194	-	hypothetical protein
1057	 65.91	0	1064363..1065019	+	218	55377999	petA	rrnAC1195	-	putative Rieske iron-sulfur protein
1058	 65.59	0	1065019..1066413	+	464	55378000	petB2	rrnAC1196	-	cytochrome B6
1059	 66.67	0	1066410..1066592	+	60	55378001	-	rrnAC1197	-	hypothetical protein
1060	 64.64	0	1066585..1069443	+	952	55378002	narG	rrnAC1199	-	nitrate reductase alpha chain
1061	 64.35	0	1069440..1070516	+	358	55378003	narH	rrnAC1200	-	nitrate reductase beta chain
1062	 64.47	0	1070509..1070736	+	75	55378004	-	rrnAC1202	-	hypothetical protein
1063	 69.18	+1	1070729..1071562	+	277	55378005	-	rrnAC1203	-	hypothetical protein
1064	 66.37	0	1071562..1072242	+	226	55378006	narJ	rrnAC1204	-	chaperone protein
1065	 73.47	+2	1072239..1073090	+	283	55378007	-	rrnAC1205	-	putative ABC-type phosphate transport system permease component
1066	 69.60	+1	1073087..1073938	+	283	55378008	prp	rrnAC1206	-	protein phosphatase
1067	 68.28	+1	1073941..1075179	+	412	55378009	mrp2	rrnAC1208	-	Mrp protein
1068	 66.67	0	1075373..1075984	+	203	55378010	-	rrnAC1209	-	hypothetical protein
1069	 61.85	0	1075992..1077029	-	345	55378011	rbnBN1	rrnAC1210	-	ribonuclease BN-like
1070	 62.07	0	1077252..1077839	-	195	55378012	-	rrnAC1211	-	hypothetical protein
1071	 62.27	0	1077836..1079131	-	431	55378013	moz	rrnAC1213	-	molybdopterin oxidoreductase
1072	 62.33	0	1079131..1079961	-	276	55378014	hmoA	rrnAC1214	-	molybdopterin oxidoreductase
1073	 61.98	0	1079964..1082459	-	831	55378015	dmsA	rrnAC1215	-	dimethylsulfoxide reductase
1074	 57.61	-1	1082452..1082694	-	80	55378016	-	rrnAC1216	-	hypothetical protein
1075	 58.06	-1	1082947..1083585	-	212	55378017	-	rrnAC1217	-	transcription regulator
1076	 67.00	+1	1083795..1085615	+	606	55378018	-	rrnAC1218	-	hypothetical protein
1077	 67.17	+1	1085615..1087981	+	788	55378019	-	rrnAC1219	-	hypothetical protein
1078	 56.60	-1	1088035..1088640	+	201	55378020	-	rrnAC1220	-	hypothetical protein
1079	 64.47	0	1088640..1089593	+	317	55378021	-	rrnAC1221	-	hypothetical protein
1080	 63.80	0	1089590..1090531	+	313	55378022	moxR4	rrnAC1222	-	methanol dehydrogenase regulatory protein
1081	 63.49	0	1090572..1091453	+	293	55378023	-	rrnAC1223	-	hypothetical protein
1082	 61.32	0	1091475..1091942	-	155	55378024	pyrI	rrnAC1224	-	aspartate carbamoyltransferase regulatory subunit
1083	 64.37	0	1091939..1092853	-	304	55378025	pyrB	rrnAC1225	-	aspartate carbamoyltransferase catalytic subunit
1084	 63.13	0	1093012..1094169	-	385	55378026	-	rrnAC1226	-	hypothetical protein
1085	 65.55	0	1094363..1094989	+	208	55378027	minD2	rrnAC1227	-	cell division inhibitor MinD-like
1086	 62.38	0	1095018..1095647	+	209	55378028	-	rrnAC1228	-	hypothetical protein
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.