IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
937	 38.48	0	1015401..1016507	+	368	68249487	proB	NTHI1066	-	gamma-glutamyl kinase
938	 39.42	0	1016588..1017178	+	196	68249488	nudH	NTHI1068	-	dinucleoside polyphosphate hydrolase
939	 39.50	0	1017178..1017972	+	264	68249489	-	NTHI1069	-	permease
940	 39.90	0	1017981..1018787	+	268	68249490	lgt	NTHI1071	-	prolipoprotein diacylglyceryl transferase
941	 40.61	0	1018797..1019648	+	283	68249491	thyA	NTHI1072	-	thymidylate synthase
942	 40.42	0	1019648..1020169	+	173	68249492	-	NTHI1073	-	hypothetical protein
943	 33.33	-1	1020197..1020511	-	104	68249493	-	NTHI1074	-	hypothetical protein
944	 38.46	0	1020582..1020893	+	103	68249494	-	NTHI1075	-	hypothetical protein
945	 40.58	0	1021018..1023723	+	901	68249495	secA	NTHI1076	-	preprotein translocase subunit SecA
946	 38.44	0	1023788..1024198	+	136	68249496	mutT	NTHI1077	-	mutator protein MutT
947	 37.75	0	1024307..1026163	+	618	68249497	kefB	NTHI1078	-	glutathione-regulated potassium-efflux system protein
948	 35.56	0	1026264..1027028	+	254	68249498	-	NTHI1079	-	hypothetical protein
949	 42.05	+1	1027206..1027928	+	240	161761272	rpsB	NTHI1080	-	30S ribosomal protein S2
950	 40.02	0	1028062..1028913	+	283	68249500	tsf	NTHI1081	-	elongation factor Ts
951	 39.08	0	1029093..1030118	-	341	68249501	lpxD	NTHI1082	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
952	 35.19	0	1030131..1030724	-	197	68249502	omp26	NTHI1083	-	Outer membrane protein 26
953	 37.25	0	1030832..1033234	-	800	68249503	-	NTHI1084	-	protective surface antigen D15
954	 35.74	0	1033254..1034585	-	443	68249504	-	NTHI1085	-	zinc metalloprotease
955	 37.95	0	1034595..1035461	-	288	68249505	cdsA	NTHI1087	-	phosphatidate cytidylyltransferase
956	 37.50	0	1035479..1036198	-	239	68249506	uppS	NTHI1088	-	undecaprenyl pyrophosphate synthetase
957	 41.53	0	1036447..1039032	+	861	68249507	leuS	NTHI1090	-	leucyl-tRNA synthetase
958	 35.70	0	1039082..1039630	+	182	68249508	-	NTHI1091	-	lipoprotein
959	 36.04	0	1039630..1040664	+	344	68249509	holA	NTHI1092	-	DNA polymerase III subunit delta
960	 44.08	+1	1040898..1043066	-	722	68249510	glyS	NTHI1093	-	glycyl-tRNA synthetase subunit beta
961	 28.30	-2	1043112..1043528	-	138	68249511	-	NTHI1094	-	hypothetical protein
962	 35.52	0	1043668..1044033	-	121	68249512	-	NTHI1095	-	hypothetical protein
963	 37.16	0	1044063..1044323	-	86	68249513	-	NTHI1097	-	glutaredoxin-related protein
964	 43.23	+1	1044382..1045290	-	302	68249514	glyQ	NTHI1098	-	glycyl-tRNA synthetase subunit alpha
965	 42.76	+1	1045553..1047079	+	508	68249515	hktE	NTHI1099	-	catalase
966	 37.23	0	1047311..1048492	-	393	68249516	-	NTHI1100	-	hypothetical protein
967	 41.24	0	1048493..1049074	-	193	68249517	-	NTHI1101	-	hypothetical protein
968	 37.53	0	1049087..1049539	-	150	68249518	-	NTHI1102	-	hypothetical protein
969	 41.11	0	1049590..1050900	-	436	68249519	eno	NTHI1103	-	phosphopyruvate hydratase
970	 41.29	0	1051021..1052226	-	401	68249520	-	NTHI1104	-	hypothetical protein
971	 38.23	0	1052223..1053365	-	380	68249521	nrfF	NTHI1105	-	formate-dependent nitrite reductase complex nrfFG subunit
972	 37.66	0	1053362..1053892	-	176	68249522	dsbE2	NTHI1106	-	thiol:disulfide interchange protein DsbE
973	 41.14	0	1053892..1055799	-	635	68249523	nrfE	NTHI1107	-	cytochrome c-type biogenesis protein NrfE
974	 39.48	0	1055908..1056720	-	270	68249524	suhB	NTHI1108	-	inositol-1-monophosphatase
975	 34.50	-1	1056920..1057432	+	170	68249525	-	NTHI1109	-	hypothetical protein
976	 33.19	-1	1057432..1058151	+	239	68249526	-	NTHI1110	-	hypothetical protein
977	 35.96	0	1058148..1058831	+	227	68249527	-	NTHI1111	-	hypothetical protein
978	 32.25	-1	1058836..1059111	+	91	68249528	-	NTHI1112	-	hypothetical protein
979	 36.69	0	1059157..1062522	+	1121	68249529	recC	NTHI1113	-	exodeoxyribonuclease V gamma chain
980	 36.44	0	1062577..1063026	+	149	68249530	-	NTHI1114	-	transcriptional regulator NrdR
981	 40.84	0	1063029..1064147	+	372	68249531	ribD	NTHI1115	-	riboflavin biosynthesis protein RibD
982	 39.78	0	1064148..1065170	+	340	68249532	degS	NTHI1116	-	protease DegS
983	 37.38	0	1065244..1066059	-	271	68249533	mutM	NTHI1118	-	formamidopyrimidine-DNA glycosylase
984	 42.25	+1	1066291..1067826	-	511	68249534	ddc	NTHI1119	-	L-2,4-diaminobutyrate decarboxylase
985	 36.59	0	1067846..1068244	-	132	68249535	-	NTHI1120	-	nucleic acid-binding protein
986	 39.74	0	1068244..1068477	-	77	68249536	-	NTHI1121	-	hypothetical protein
987	 43.37	+1	1068624..1069988	-	454	68249537	dat	NTHI1122	-	diaminobutyrate--2-oxoglutarate aminotransferase
988	 34.50	-1	1070335..1070505	-	56	68249538	rpmG	NTHI1123	-	50S ribosomal protein L33
989	 43.04	+1	1070517..1070753	-	78	68249539	rpmB	NTHI1124	-	50S ribosomal protein L28
990	 33.76	-1	1070967..1071671	-	234	68249540	radC	NTHI1125	-	DNA repair protein RadC
991	 39.65	0	1071795..1072997	+	400	68249541	dfp	NTHI1126	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
992	 40.35	0	1073045..1073500	+	151	68249542	dut	NTHI1127	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
993	 38.81	0	1073504..1074160	+	218	68249543	slmA	NTHI1128	-	nucleoid occlusion protein
994	 34.13	-1	1074182..1074433	+	83	68249544	-	NTHI1129	-	hypothetical protein
995	 39.11	0	1074418..1075092	+	224	68249545	crp	NTHI1130	-	cAMP-regulatory protein
996	 34.61	-1	1075457..1076635	-	392	68249546	rumB	NTHI1131	-	23S rRNA methyluridine methyltransferase
997	 38.26	0	1076628..1077683	-	351	68249547	nagZ	NTHI1132	-	beta-hexosaminidase
998	 31.34	-1	1077687..1078037	-	116	68249548	-	NTHI1133	-	periplasmic lipoprotein
999	 37.15	0	1078037..1078429	-	130	68249549	-	NTHI1134	-	HIT-like protein
1000	 41.33	0	1078504..1081329	-	941	68249550	ileS	NTHI1135	-	isoleucyl-tRNA synthetase
1001	 39.19	0	1081358..1082296	-	312	68249551	ribF	NTHI1136	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1002	 41.81	0	1082331..1083863	-	510	68249552	mviN	NTHI1137	-	putative virulence factor MviN
1003	 39.77	0	1084172..1084435	+	87	161761271	rpsT	NTHI1139	-	30S ribosomal protein S20
1004	 36.33	0	1084507..1085073	-	188	68249554	-	NTHI1140	-	hypothetical protein
1005	 43.82	+1	1085219..1086076	+	285	68249555	menB	NTHI1141	-	naphthoate synthase
1006	 42.22	+1	1086246..1087235	+	329	68249556	menC	NTHI1142	-	O-succinylbenzoate synthase
1007	 37.56	0	1087292..1087741	+	149	68249557	aroQ	NTHI1143	-	3-dehydroquinate dehydratase
1008	 46.37	+2	1087895..1088362	+	155	68249558	accB	NTHI1144	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
1009	 40.46	0	1088539..1089885	+	448	68249559	accC	NTHI1145	-	acetyl-CoA carboxylase biotin carboxylase subunit
1010	 35.27	0	1090090..1090347	+	85	68249560	-	NTHI1146	-	hypothetical protein
1011	 38.56	0	1090344..1091798	+	484	68249561	panF	NTHI1147	-	sodium/panthothenate symporter
1012	 37.46	0	1091919..1092791	+	290	68249562	-	NTHI1148	-	hypothetical protein
1013	 40.43	0	1092826..1093713	+	295	68249563	prmA	NTHI1149	-	ribosomal protein L11 methyltransferase
1014	 40.98	0	1093860..1094840	+	326	68249564	dusB	NTHI1151	-	tRNA-dihydrouridine synthase B
1015	 37.67	0	1094834..1095133	+	99	68249565	fis	NTHI1152	-	DNA-binding protein Fis
1016	 36.21	0	1095234..1095719	-	161	68249566	smpB	NTHI1153	-	SsrA-binding protein
1017	 40.99	0	1095958..1096923	-	321	68249567	pfkA	NTHI1154	-	6-phosphofructokinase
1018	 34.19	-1	1097019..1097600	-	193	68249568	-	NTHI1155	-	hypothetical protein
1019	 35.33	0	1097593..1098444	-	283	68249569	-	NTHI1156	-	hypothetical protein
1020	 39.66	0	1098422..1099543	-	373	68249570	smf	NTHI1157	-	hypothetical protein
1021	 41.80	0	1100087..1101634	+	515	68249571	leuA	NTHI1160	-	2-isopropylmalate synthase
1022	 42.15	+1	1101797..1102873	+	358	68249572	leuB	NTHI1161	-	3-isopropylmalate dehydrogenase
1023	 42.48	+1	1103050..1104459	+	469	68249573	leuC	NTHI1162	-	isopropylmalate isomerase large subunit
1024	 40.30	0	1104484..1105086	+	200	68249574	leuD	NTHI1163	-	isopropylmalate isomerase small subunit
1025	 37.03	0	1105200..1110584	-	1794	68249575	iga1	NTHI1164	-	IgA-specific serine endopeptidase
1026	 40.00	0	1110811..1111890	-	359	68249576	recF	NTHI1165	-	recombination protein F
1027	 39.60	0	1111892..1112992	-	366	68249577	dnaN	NTHI1166	-	DNA polymerase III subunit beta
1028	 39.63	0	1113185..1114549	-	454	68249578	dnaA	NTHI1167	-	chromosomal replication initiation protein
1029	 35.52	0	1114736..1117474	-	912	68249579	tbp1	NTHI1168	-	transferrin-binding protein 1
1030	 36.34	0	1117519..1119411	-	630	68249580	tbp2	NTHI1169	-	transferrin-binding protein 2 precursor
1031	 33.61	-1	1119508..1120968	+	486	68249581	-	NTHI1171	-	hypothetical protein
1032	 41.48	0	1121144..1121278	+	44	68249582	rpmH	NTHI1172	-	50S ribosomal protein L34
1033	 37.22	0	1121291..1121650	+	119	68249583	rnpA	NTHI1173	-	ribonuclease P
1034	 36.40	0	1121614..1121874	+	86	68249584	-	NTHI1174	-	hypothetical protein
1035	 35.79	0	1121874..1123499	+	541	68249585	yidC	NTHI1175	-	putative inner membrane protein translocase component YidC
1036	 39.22	0	1124370..1125728	+	452	68249586	trmE	NTHI1178	-	tRNA modification GTPase TrmE
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.