IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.35   STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
870	 34.42	-1	942711..943445	+	244	68249420	-	NTHI0990	-	hypothetical protein
871	 34.05	-1	943451..944008	+	185	68249421	ispZ	NTHI0991	-	intracellular septation protein A
872	 41.29	0	944008..944472	+	154	68249422	-	NTHI0992	-	putative acyl-CoA thioester hydrolase
873	 40.74	0	944489..944785	+	98	68249423	-	NTHI0994	-	YciI-like protein
874	 35.47	0	944801..946582	+	593	68249424	slt	NTHI0995	-	putative soluble lytic murein transglycosylase
875	 35.95	0	946620..946925	+	101	68249425	trpR	NTHI0996	-	Trp operon repressor
876	 35.49	0	946912..947652	+	246	161761275	mtgA	NTHI0997	-	monofunctional biosynthetic peptidoglycan transglycosylase
877	 38.26	0	947758..948102	-	114	68249427	frdD	NTHI0998	-	fumarate reductase subunit D
878	 36.01	0	948115..948525	-	136	68249428	frdC	NTHI0999	-	fumarate reductase subunit C
879	 39.43	0	948536..949306	-	256	68249429	frdB	NTHI1000	-	fumarate reductase iron-sulfur subunit
880	 42.22	+1	949299..951098	-	599	68249430	frdA	NTHI1002	-	fumarate reductase flavoprotein subunit
881	 39.20	0	951309..952280	+	323	161761274	genX	NTHI1003	-	lysyl-tRNA synthetase
882	 35.23	0	952546..953229	-	227	68249432	cpxR	NTHI1004	-	transcriptional regulatory protein CpxR
883	 38.16	0	953283..953696	-	137	68249433	smpA	NTHI1005	-	small protein A
884	 35.09	0	953762..954787	-	341	68249434	ndpA	NTHI1006	-	nucleoid-associated protein NdpA
885	 36.99	0	954904..955122	+	72	68249435	-	NTHI1007	-	hypothetical protein
886	 36.69	0	955124..956881	+	585	68249436	-	NTHI1008	-	hydrolase of alkaline phosphatase superfamily
887	 39.58	0	957079..958071	+	330	68249437	-	NTHI1009	-	hypothetical protein
888	 36.27	0	958210..958788	-	192	68249438	mobA	NTHI1010	-	molybdopterin-guanine dinucleotide biosynthesis protein A
889	 31.09	-2	958853..959119	+	88	68249439	-	NTHI1011	-	hypothetical protein
890	 35.60	0	959130..959747	+	205	68249440	dsbA	NTHI1012	-	thiol:disulfide interchange protein DsbA
891	 42.86	+1	959809..960144	+	111	68249441	-	NTHI1013	-	hypothetical protein
892	 38.46	0	960288..961379	+	363	68249442	trmA	NTHI1014	-	tRNA (uracil-5-)-methyltransferase
893	 42.50	+1	961568..962134	+	188	68249443	-	NTHI1015	-	hypothetical protein
894	 36.55	0	962128..962562	+	144	68249444	-	NTHI1016	-	positive regulator of sigma E
895	 39.11	0	962963..963499	+	178	68249445	mobB	NTHI1019	-	molybdopterin-guanine dinucleotide biosynthesis protein B
896	 39.08	0	963496..964887	+	463	68249446	-	NTHI1020	-	hypothetical protein
897	 37.58	0	965028..966677	+	549	68249447	hbpA	NTHI1021	-	heme-binding protein A
898	 33.46	-1	966853..967614	+	253	68249448	-	NTHI1022	-	putative heme iron utilization protein
899	 41.95	+1	967751..968098	-	115	68249449	-	NTHI1023	-	hypothetical protein
900	 40.53	0	968113..970905	-	930	68249450	polA	NTHI1024	-	DNA polymerase I
901	 34.98	0	971054..971356	+	100	68249451	-	NTHI1025	-	hypothetical protein
902	 37.06	0	971679..972242	+	187	68249452	-	NTHI1027	-	5-formyltetrahydrofolate cyclo-ligase
903	 41.70	0	972370..974940	+	856	68249453	clpB	NTHI1028	-	ClpB
904	 43.72	+1	974978..975718	-	246	68249454	-	NTHI1029	-	23S rRNA (guanosine-2'-O-)-methyltransferase
905	 40.78	0	975774..978122	-	782	68249455	vacB	NTHI1030	-	ribonuclease R
906	 40.25	0	978314..979021	-	235	68249456	-	NTHI1031	-	hypothetical protein
907	 42.34	+1	979214..979846	+	210	161761273	pdxH	NTHI1032	-	pyridoxamine 5'-phosphate oxidase
908	 40.41	0	979933..981783	-	616	68249458	typA	NTHI1033	-	GTP-binding protein TypA/ BipA
909	 27.62	-2	981910..982890	-	326	68249459	lic3A2	NTHI1034	-	CMP-neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase
910	 38.78	0	983047..984459	+	470	68249460	glnA	NTHI1036	-	glutamine synthetase
911	 34.67	-1	984546..985589	+	347	68249461	rmlB	NTHI1037	-	dTDP-glucose 4,6-dehydratase
912	 38.54	0	985666..986970	+	434	68249462	pepB	NTHI1038	-	aminopeptidase B
913	 36.15	0	986977..987402	+	141	68249463	ndk	NTHI1039	-	nucleoside diphosphate kinase
914	 41.26	0	987472..988644	-	390	68249464	obgE	NTHI1040	-	GTPase ObgE
915	 35.50	0	988672..989592	-	306	68249465	-	NTHI1041	-	putative transport protein
916	 41.47	0	989672..989929	-	85	68249466	rpmA	NTHI1042	-	50S ribosomal protein L27
917	 43.59	+1	989950..990261	-	103	68249467	rplU	NTHI1043	-	50S ribosomal protein L21
918	 40.61	0	990474..991463	+	329	68249468	ispB	NTHI1044	-	octaprenyl-diphosphate synthase
919	 37.94	0	991514..992251	+	245	68249469	-	NTHI1045	-	hypothetical protein
920	 39.97	0	992311..993681	-	456	68249470	-	NTHI1046	-	putative Na+/alanine symporter
921	 36.15	0	994081..994791	-	236	68249471	arcA	NTHI1047	-	two-component response regulator
922	 37.93	0	994983..996722	+	579	68249472	dipZ	NTHI1048	-	thiol:disulfide interchange protein precursor
923	 37.04	0	996839..997243	+	134	68249473	-	NTHI1049	-	hypothetical protein
924	 41.34	0	997432..999030	+	532	68249474	purH	NTHI1051	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
925	 44.57	+1	999126..1000415	+	429	68249475	purD	NTHI1052	-	phosphoribosylamine--glycine ligase
926	 39.81	0	1002261..1003526	+	421	68249476	glyA	NTHI1054	-	serine hydroxymethyltransferase
927	 38.55	0	1003585..1004217	+	210	68249477	coaE	NTHI1055	-	dephospho-CoA kinase
928	 41.55	0	1004210..1004416	+	68	68249478	-	NTHI1056	-	zinc-binding protein
929	 40.49	0	1004525..1005781	+	418	68249479	rhlB	NTHI1057	-	ATP-dependent RNA helicase RhlB
930	 33.16	-1	1006023..1006586	+	187	68249480	-	NTHI1058	-	transcriptional regulator
931	 38.93	0	1006618..1007814	+	398	68249481	-	NTHI1059	-	putative membrane-fusion protein
932	 38.82	0	1007814..1010912	+	1032	68249482	-	NTHI1060	-	cation/multidrug efflux pump
933	 36.52	0	1011447..1011917	+	156	68249483	-	NTHI1061	-	cell division protein
934	 39.33	0	1011930..1013462	-	510	68249484	emrB	NTHI1062	-	multidrug resistance protein
935	 38.28	0	1013472..1014644	-	390	68249485	emrA	NTHI1063	-	multidrug resistance protein A
936	 36.85	0	1014817..1015299	-	160	68249486	folA	NTHI1065	-	dihydrofolate reductase
937	 38.48	0	1015401..1016507	+	368	68249487	proB	NTHI1066	-	gamma-glutamyl kinase
938	 39.42	0	1016588..1017178	+	196	68249488	nudH	NTHI1068	-	dinucleoside polyphosphate hydrolase
939	 39.50	0	1017178..1017972	+	264	68249489	-	NTHI1069	-	permease
940	 39.90	0	1017981..1018787	+	268	68249490	lgt	NTHI1071	-	prolipoprotein diacylglyceryl transferase
941	 40.61	0	1018797..1019648	+	283	68249491	thyA	NTHI1072	-	thymidylate synthase
942	 40.42	0	1019648..1020169	+	173	68249492	-	NTHI1073	-	hypothetical protein
943	 33.33	-1	1020197..1020511	-	104	68249493	-	NTHI1074	-	hypothetical protein
944	 38.46	0	1020582..1020893	+	103	68249494	-	NTHI1075	-	hypothetical protein
945	 40.58	0	1021018..1023723	+	901	68249495	secA	NTHI1076	-	preprotein translocase subunit SecA
946	 38.44	0	1023788..1024198	+	136	68249496	mutT	NTHI1077	-	mutator protein MutT
947	 37.75	0	1024307..1026163	+	618	68249497	kefB	NTHI1078	-	glutathione-regulated potassium-efflux system protein
948	 35.56	0	1026264..1027028	+	254	68249498	-	NTHI1079	-	hypothetical protein
949	 42.05	+1	1027206..1027928	+	240	161761272	rpsB	NTHI1080	-	30S ribosomal protein S2
950	 40.02	0	1028062..1028913	+	283	68249500	tsf	NTHI1081	-	elongation factor Ts
951	 39.08	0	1029093..1030118	-	341	68249501	lpxD	NTHI1082	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
952	 35.19	0	1030131..1030724	-	197	68249502	omp26	NTHI1083	-	Outer membrane protein 26
953	 37.25	0	1030832..1033234	-	800	68249503	-	NTHI1084	-	protective surface antigen D15
954	 35.74	0	1033254..1034585	-	443	68249504	-	NTHI1085	-	zinc metalloprotease
955	 37.95	0	1034595..1035461	-	288	68249505	cdsA	NTHI1087	-	phosphatidate cytidylyltransferase
956	 37.50	0	1035479..1036198	-	239	68249506	uppS	NTHI1088	-	undecaprenyl pyrophosphate synthetase
957	 41.53	0	1036447..1039032	+	861	68249507	leuS	NTHI1090	-	leucyl-tRNA synthetase
958	 35.70	0	1039082..1039630	+	182	68249508	-	NTHI1091	-	lipoprotein
959	 36.04	0	1039630..1040664	+	344	68249509	holA	NTHI1092	-	DNA polymerase III subunit delta
960	 44.08	+1	1040898..1043066	-	722	68249510	glyS	NTHI1093	-	glycyl-tRNA synthetase subunit beta
961	 28.30	-2	1043112..1043528	-	138	68249511	-	NTHI1094	-	hypothetical protein
962	 35.52	0	1043668..1044033	-	121	68249512	-	NTHI1095	-	hypothetical protein
963	 37.16	0	1044063..1044323	-	86	68249513	-	NTHI1097	-	glutaredoxin-related protein
964	 43.23	+1	1044382..1045290	-	302	68249514	glyQ	NTHI1098	-	glycyl-tRNA synthetase subunit alpha
965	 42.76	+1	1045553..1047079	+	508	68249515	hktE	NTHI1099	-	catalase
966	 37.23	0	1047311..1048492	-	393	68249516	-	NTHI1100	-	hypothetical protein
967	 41.24	0	1048493..1049074	-	193	68249517	-	NTHI1101	-	hypothetical protein
968	 37.53	0	1049087..1049539	-	150	68249518	-	NTHI1102	-	hypothetical protein
969	 41.11	0	1049590..1050900	-	436	68249519	eno	NTHI1103	-	phosphopyruvate hydratase
38.35	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.