IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.35   STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
828	 39.04	0	907160..907492	+	110	68249378	rplV	NTHI0943	-	50S ribosomal protein L22
829	 42.80	+1	907510..908217	+	235	68249379	rpsC	NTHI0945	-	30S ribosomal protein S3
830	 43.07	+1	908231..908641	+	136	68249380	rplP	NTHI0946	-	50S ribosomal protein L16
831	 41.67	0	908641..908832	+	63	68249381	rpmC	NTHI0947	-	50S ribosomal protein L29
832	 36.82	0	908832..909089	+	85	68249382	rpsQ	NTHI0948	-	30S ribosomal protein S17
833	 27.88	-2	909479..910102	+	207	68249383	-	NTHI0950	-	hypothetical protein
834	 41.67	0	910383..910754	+	123	68249384	rplN	NTHI0951	-	50S ribosomal protein L14
835	 36.54	0	910765..911076	+	103	68249385	rplX	NTHI0952	-	50S ribosomal protein L24
836	 41.30	0	911094..911633	+	179	68249386	rplE	NTHI0953	-	50S ribosomal protein L5
837	 42.48	+1	911645..911950	+	101	68249387	rpsN	NTHI0954	-	30S ribosomal protein S14
838	 40.20	0	911987..912379	+	130	68249388	rpsH	NTHI0955	-	30S ribosomal protein S8
839	 41.39	0	912395..912928	+	177	68249389	rplF	NTHI0956	-	50S ribosomal protein L6
840	 45.48	+1	912942..913295	+	117	68249390	rplR	NTHI0957	-	50S ribosomal protein L18
841	 42.12	+1	913310..913810	+	166	68249391	rpsE	NTHI0958	-	30S ribosomal protein S5
842	 41.11	0	913817..913996	+	59	68249392	rpmD	NTHI0959	-	50S ribosomal protein L30
843	 41.15	0	914000..914434	+	144	68249393	rplO	NTHI0960	-	50S ribosomal protein L15
844	 36.12	0	914442..915767	+	441	68249394	secY	NTHI0961	-	preprotein translocase subunit SecY
845	 42.58	+1	916049..916405	+	118	68249395	rpsM	NTHI0962	-	30S ribosomal protein S13
846	 44.36	+1	916421..916810	+	129	68249396	rpsK	NTHI0963	-	30S ribosomal protein S11
847	 37.68	0	916838..917458	+	206	68249397	rpsD	NTHI0964	-	30S ribosomal protein S4
848	 39.41	0	917490..918476	+	328	68249398	rpoA	NTHI0965	-	DNA-directed RNA polymerase subunit alpha
849	 41.34	0	918517..918903	+	128	68249399	rplQ	NTHI0966	-	50S ribosomal protein L17
850	 31.49	-1	919030..919626	-	198	68249400	-	NTHI0967	-	cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase
851	 34.44	-1	920579..921388	+	269	68249401	-	NTHI0970	-	permease
852	 39.03	0	921420..922613	-	397	68249402	dxr	NTHI0971	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
853	 37.46	0	922723..923280	-	185	68249403	frr	NTHI0972	-	ribosome recycling factor
854	 39.46	0	923432..925048	-	538	68249404	pckA	NTHI0973	-	phosphoenolpyruvate carboxykinase
855	 38.32	0	925221..926102	-	293	68249405	hslO	NTHI0974	-	Hsp33-like chaperonin
856	 41.19	0	926247..927620	-	457	68249406	argH	NTHI0975	-	argininosuccinate lyase
857	 38.18	0	927755..928642	-	295	68249407	galU	NTHI0976	-	UTP--glucose-1-phosphate uridylyltransferase
858	 36.98	0	928664..928855	-	63	68249408	csrA	NTHI0977	-	carbon storage regulator
859	 40.72	0	928933..931557	-	874	68249409	alaS	NTHI0978	-	alanyl-tRNA synthetase
860	 36.38	0	931744..932169	-	141	68249410	uspA	NTHI0979	-	universal stress protein A
861	 39.13	0	932271..933563	-	430	68249411	pepP	NTHI0980	-	Xaa-Pro aminopeptidase
862	 37.16	0	933575..934123	-	182	68249412	-	NTHI0981	-	hypothetical protein
863	 38.89	0	934294..935319	-	341	68249413	galM	NTHI0982	-	aldose 1-epimerase
864	 40.69	0	935326..936522	-	398	68249414	galK	NTHI0983	-	galactokinase
865	 40.10	0	936557..937606	-	349	68249415	galT	NTHI0984	-	galactose-1-phosphate uridylyltransferase
866	 38.64	0	937814..938812	+	332	68249416	galR	NTHI0986	-	HTH-type transcriptional regulator GalR
867	 37.14	0	938903..939952	+	349	68249417	mglB	NTHI0987	-	D-galactose-binding periplasmic protein precursor
868	 37.87	0	940018..941538	+	506	68249418	mglA	NTHI0988	-	galactose/methyl galaxtoside transporter ATP-binding protein
869	 38.48	0	941555..942565	+	336	68249419	mglC	NTHI0989	-	beta-methylgalactoside transporter inner membrane component
870	 34.42	-1	942711..943445	+	244	68249420	-	NTHI0990	-	hypothetical protein
871	 34.05	-1	943451..944008	+	185	68249421	ispZ	NTHI0991	-	intracellular septation protein A
872	 41.29	0	944008..944472	+	154	68249422	-	NTHI0992	-	putative acyl-CoA thioester hydrolase
873	 40.74	0	944489..944785	+	98	68249423	-	NTHI0994	-	YciI-like protein
874	 35.47	0	944801..946582	+	593	68249424	slt	NTHI0995	-	putative soluble lytic murein transglycosylase
875	 35.95	0	946620..946925	+	101	68249425	trpR	NTHI0996	-	Trp operon repressor
876	 35.49	0	946912..947652	+	246	161761275	mtgA	NTHI0997	-	monofunctional biosynthetic peptidoglycan transglycosylase
877	 38.26	0	947758..948102	-	114	68249427	frdD	NTHI0998	-	fumarate reductase subunit D
878	 36.01	0	948115..948525	-	136	68249428	frdC	NTHI0999	-	fumarate reductase subunit C
879	 39.43	0	948536..949306	-	256	68249429	frdB	NTHI1000	-	fumarate reductase iron-sulfur subunit
880	 42.22	+1	949299..951098	-	599	68249430	frdA	NTHI1002	-	fumarate reductase flavoprotein subunit
881	 39.20	0	951309..952280	+	323	161761274	genX	NTHI1003	-	lysyl-tRNA synthetase
882	 35.23	0	952546..953229	-	227	68249432	cpxR	NTHI1004	-	transcriptional regulatory protein CpxR
883	 38.16	0	953283..953696	-	137	68249433	smpA	NTHI1005	-	small protein A
884	 35.09	0	953762..954787	-	341	68249434	ndpA	NTHI1006	-	nucleoid-associated protein NdpA
885	 36.99	0	954904..955122	+	72	68249435	-	NTHI1007	-	hypothetical protein
886	 36.69	0	955124..956881	+	585	68249436	-	NTHI1008	-	hydrolase of alkaline phosphatase superfamily
887	 39.58	0	957079..958071	+	330	68249437	-	NTHI1009	-	hypothetical protein
888	 36.27	0	958210..958788	-	192	68249438	mobA	NTHI1010	-	molybdopterin-guanine dinucleotide biosynthesis protein A
889	 31.09	-2	958853..959119	+	88	68249439	-	NTHI1011	-	hypothetical protein
890	 35.60	0	959130..959747	+	205	68249440	dsbA	NTHI1012	-	thiol:disulfide interchange protein DsbA
891	 42.86	+1	959809..960144	+	111	68249441	-	NTHI1013	-	hypothetical protein
892	 38.46	0	960288..961379	+	363	68249442	trmA	NTHI1014	-	tRNA (uracil-5-)-methyltransferase
893	 42.50	+1	961568..962134	+	188	68249443	-	NTHI1015	-	hypothetical protein
894	 36.55	0	962128..962562	+	144	68249444	-	NTHI1016	-	positive regulator of sigma E
895	 39.11	0	962963..963499	+	178	68249445	mobB	NTHI1019	-	molybdopterin-guanine dinucleotide biosynthesis protein B
896	 39.08	0	963496..964887	+	463	68249446	-	NTHI1020	-	hypothetical protein
897	 37.58	0	965028..966677	+	549	68249447	hbpA	NTHI1021	-	heme-binding protein A
898	 33.46	-1	966853..967614	+	253	68249448	-	NTHI1022	-	putative heme iron utilization protein
899	 41.95	+1	967751..968098	-	115	68249449	-	NTHI1023	-	hypothetical protein
900	 40.53	0	968113..970905	-	930	68249450	polA	NTHI1024	-	DNA polymerase I
901	 34.98	0	971054..971356	+	100	68249451	-	NTHI1025	-	hypothetical protein
902	 37.06	0	971679..972242	+	187	68249452	-	NTHI1027	-	5-formyltetrahydrofolate cyclo-ligase
903	 41.70	0	972370..974940	+	856	68249453	clpB	NTHI1028	-	ClpB
904	 43.72	+1	974978..975718	-	246	68249454	-	NTHI1029	-	23S rRNA (guanosine-2'-O-)-methyltransferase
905	 40.78	0	975774..978122	-	782	68249455	vacB	NTHI1030	-	ribonuclease R
906	 40.25	0	978314..979021	-	235	68249456	-	NTHI1031	-	hypothetical protein
907	 42.34	+1	979214..979846	+	210	161761273	pdxH	NTHI1032	-	pyridoxamine 5'-phosphate oxidase
908	 40.41	0	979933..981783	-	616	68249458	typA	NTHI1033	-	GTP-binding protein TypA/ BipA
909	 27.62	-2	981910..982890	-	326	68249459	lic3A2	NTHI1034	-	CMP-neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase
910	 38.78	0	983047..984459	+	470	68249460	glnA	NTHI1036	-	glutamine synthetase
911	 34.67	-1	984546..985589	+	347	68249461	rmlB	NTHI1037	-	dTDP-glucose 4,6-dehydratase
912	 38.54	0	985666..986970	+	434	68249462	pepB	NTHI1038	-	aminopeptidase B
913	 36.15	0	986977..987402	+	141	68249463	ndk	NTHI1039	-	nucleoside diphosphate kinase
914	 41.26	0	987472..988644	-	390	68249464	obgE	NTHI1040	-	GTPase ObgE
915	 35.50	0	988672..989592	-	306	68249465	-	NTHI1041	-	putative transport protein
916	 41.47	0	989672..989929	-	85	68249466	rpmA	NTHI1042	-	50S ribosomal protein L27
917	 43.59	+1	989950..990261	-	103	68249467	rplU	NTHI1043	-	50S ribosomal protein L21
918	 40.61	0	990474..991463	+	329	68249468	ispB	NTHI1044	-	octaprenyl-diphosphate synthase
919	 37.94	0	991514..992251	+	245	68249469	-	NTHI1045	-	hypothetical protein
920	 39.97	0	992311..993681	-	456	68249470	-	NTHI1046	-	putative Na+/alanine symporter
921	 36.15	0	994081..994791	-	236	68249471	arcA	NTHI1047	-	two-component response regulator
922	 37.93	0	994983..996722	+	579	68249472	dipZ	NTHI1048	-	thiol:disulfide interchange protein precursor
923	 37.04	0	996839..997243	+	134	68249473	-	NTHI1049	-	hypothetical protein
924	 41.34	0	997432..999030	+	532	68249474	purH	NTHI1051	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
925	 44.57	+1	999126..1000415	+	429	68249475	purD	NTHI1052	-	phosphoribosylamine--glycine ligase
926	 39.81	0	1002261..1003526	+	421	68249476	glyA	NTHI1054	-	serine hydroxymethyltransferase
927	 38.55	0	1003585..1004217	+	210	68249477	coaE	NTHI1055	-	dephospho-CoA kinase
38.35	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.