IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
698	 39.00	0	746109..746549	+	146	68249248	mioC	NTHI0791	-	flavodoxin
699	 38.62	0	746546..746980	+	144	68249249	dtd	NTHI0792	-	D-tyrosyl-tRNA deacylase
700	 41.09	0	747287..747763	-	158	68249250	ispF	NTHI0793	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
701	 40.56	0	747760..748437	-	225	68249251	ispD	NTHI0794	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
702	 31.54	-1	748437..748715	-	92	68249252	ftsB	NTHI0795	-	cell division protein FtsB
703	 41.45	0	748838..749305	-	155	68249253	gpt	NTHI0796	-	xanthine-guanine phosphoribosyltransferase
704	 40.62	0	749416..750870	+	484	68249254	pepD	NTHI0797	-	aminoacyl-histidine dipeptidase
705	 40.20	0	750923..751810	-	295	68249255	xerC	NTHI0798	-	site-specific tyrosine recombinase XerC
706	 37.41	0	751804..752244	-	146	68249256	-	NTHI0799	-	hypothetical protein
707	 42.80	+1	752410..753201	+	263	68249257	tpiA	NTHI0800	-	triosephosphate isomerase
708	 37.42	0	753283..753600	-	105	68249258	glpE	NTHI0801	-	thiosulfate sulfurtransferase GlpE
709	 35.04	0	753601..754479	-	292	68249259	-	NTHI0802	-	hypothetical protein
710	 40.16	0	754511..755389	-	292	68249260	ilvY	NTHI0803	-	DNA-binding transcriptional regulator IlvY
711	 40.09	0	756073..757551	+	492	68249261	ilvC	NTHI0804	-	ketol-acid reductoisomerase
712	 36.14	0	757662..758942	-	426	68249262	glpC	NTHI0805	-	sn-glycerol-3-phosphate dehydrogenase subunit C
713	 39.65	0	758953..760251	-	432	68249263	glpB	NTHI0806	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
714	 43.97	+1	760241..761932	-	563	68249264	glpA	NTHI0808	-	sn-glycerol-3-phosphate dehydrogenase subunit A
715	 41.23	0	762225..763667	+	480	68249265	glpT	NTHI0809	-	glycerol-3-phosphate transporter
716	 35.98	0	763771..764865	+	364	68249266	glpQ	NTHI0811	-	glycerophosphodiester phosphodiesterase
717	 43.52	+1	765095..765889	+	264	68249267	glpF	NTHI0812	-	glycerol uptake facilitator protein
718	 42.66	+1	765910..767421	+	503	68249268	glpK	NTHI0813	-	glycerol kinase
719	 41.03	0	767505..767972	-	155	68249269	gpt2	NTHI0814	-	xanthine-guanine phosphoribosyltransferase
720	 40.36	0	768257..769081	+	274	68249270	hel	NTHI0816	-	Outer membrane protein P4, NADP phosphatase
721	 37.57	0	769248..769931	+	227	68249271	rluE	NTHI0817	-	hypothetical protein
722	 38.02	0	771036..774920	-	1294	68249272	-	NTHI0820	-	hypothetical protein
723	 39.44	0	774930..776666	-	578	68249273	-	NTHI0821	-	hypothetical protein
724	 43.80	+1	776817..777389	-	190	68249274	slyD	NTHI0822	-	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD
725	 37.12	0	777467..777889	-	140	68249275	-	NTHI0823	-	hypothetical protein
726	 40.10	0	777998..779017	+	339	68249276	truD	NTHI0824	-	tRNA pseudouridine synthase D
727	 40.00	0	779027..779776	+	249	68249277	surE	NTHI0825	-	stationary phase survival protein SurE
728	 41.80	0	779785..780363	+	192	68249278	-	NTHI0826	-	hypothetical protein
729	 37.63	0	780372..780557	+	61	68249279	-	NTHI0827	-	hypothetical protein
730	 40.48	0	780592..781809	+	405	68249280	lppB	NTHI0830	-	lipoprotein
731	 40.03	0	782177..783595	+	472	68249281	tnaA	NTHI0831	-	tryptophanase
732	 35.60	0	783679..784911	+	410	68249282	tnaB	NTHI0832	-	tryptophan-specific transport protein
733	 42.34	+1	785052..787637	+	861	68249283	mutS	NTHI0834	-	DNA mismatch repair protein
734	 38.60	0	787843..789228	+	461	68249284	selA	NTHI0835	-	selenocysteine synthase
735	 38.87	0	789225..791084	+	619	68249285	selB	NTHI0836	-	selenocysteine-specific elongation factor
736	 30.88	-2	791103..791957	+	284	68249286	-	NTHI0837	-	hypothetical protein
737	 35.69	0	792077..792373	+	98	68249287	relB	NTHI0838	-	DNA-damage-inducible protein J, negative regulator of translation
738	 33.33	-1	792373..792681	+	102	68249288	-	NTHI0839	-	hypothetical protein
739	 36.49	0	796227..797525	+	432	68249289	tig	NTHI0843	-	trigger factor
740	 40.72	0	797648..798229	+	193	68249290	clpP	NTHI0844	-	ATP-dependent Clp protease proteolytic subunit
741	 36.00	0	798239..799474	+	411	68249291	clpX	NTHI0846	-	ATP-dependent protease ATP-binding subunit
742	 37.17	0	799619..800035	+	138	68249292	secE	NTHI0847	-	preprotein translocase subunit SecE
743	 37.10	0	800037..800594	+	185	68249293	nusG	NTHI0848	-	transcription antitermination protein NusG
744	 39.84	0	800745..801497	+	250	68249294	vacJ	NTHI0849	-	VacJ lipoprotein
745	 40.71	0	801551..801943	+	130	68249295	-	NTHI0851	-	YjgF family translation initiation inhibitor
746	 41.08	0	802111..802962	+	283	68249296	htpX	NTHI0852	-	heat shock protein HtpX
747	 37.08	0	803004..803243	-	79	161761277	sirA	NTHI0853	-	cell developmental protein SirA
748	 40.42	0	803359..803979	+	206	68249298	-	NTHI0854	-	hypothetical protein
749	 36.75	0	803982..805445	+	487	68249299	trkH	NTHI0855	-	Trk system potassium uptake protein TrkH
750	 34.76	-1	811880..812299	+	139	68249300	psiE	NTHI0856	-	phosphate-starvation-inducible protein PsiE
751	 36.60	0	812363..813649	-	428	68249301	hemY	NTHI0857	-	HemY
752	 34.16	-1	813660..814871	-	403	68249302	hemX	NTHI0858	-	putative uroporphyrin-III C-methyltransferase
753	 38.74	0	815177..817708	+	843	68249303	cyaA	NTHI0859	-	adenylate cyclase
754	 42.26	+1	817782..818789	+	335	68249304	gpsA	NTHI0860	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
755	 40.92	0	818806..819609	+	267	68249305	cysE	NTHI0861	-	serine acetyltransferase
756	 39.34	0	819619..820434	+	271	68249306	aroE	NTHI0862	-	shikimate 5-dehydrogenase
757	 35.21	0	820572..821957	+	461	68249307	-	NTHI0863	-	putative di- and tricarboxylate transporter
758	 39.69	0	822095..822943	-	282	68249308	folD	NTHI0864	-	FolD bifunctional protein
759	 38.62	0	823471..824757	-	428	68249309	fucP	NTHI0865	-	L-fucose permease
760	 38.56	0	824796..825446	-	216	68249310	fucA	NTHI0866	-	L-fuculose phosphate aldolase
761	 39.31	0	825466..825900	-	144	68249311	fucU	NTHI0867	-	fucose operon protein FucU
762	 38.22	0	825914..827326	-	470	68249312	fucK	NTHI0870	-	L-fuculokinase
763	 41.19	0	827399..829168	-	589	161761276	fucI	NTHI0871	-	L-fucose isomerase
764	 33.60	-1	829398..830147	-	249	68249314	fucR	NTHI0872	-	L-fucose operon activator
765	 40.66	0	830346..833117	+	923	68249315	hepA	NTHI0873	-	ATP-dependent helicase HepA
766	 40.61	0	833120..833779	+	219	68249316	rluA	NTHI0874	-	hypothetical protein
767	 36.44	0	833806..834384	+	192	68249317	glpG	NTHI0875	-	hypothetical protein
768	 39.58	0	834414..835181	+	255	68249318	glpR	NTHI0876	-	glycerol-3-phosphate regulon repressor
769	 35.40	0	835483..836304	-	273	68249319	metQ	NTHI0877	-	putative D-methionine-binding lipoprotein MetQ
770	 41.30	0	836343..837032	-	229	68249320	metI	NTHI0878	-	D-methionine transport system permease protein
771	 38.34	0	837022..838059	-	345	68249321	metN	NTHI0879	-	DL-methionine transporter ATP-binding subunit
772	 36.76	0	838235..838789	+	184	68249322	-	NTHI0880	-	D,D-heptose 1,7-bisphosphate phosphatase
773	 32.62	-1	845041..845601	+	186	68249323	-	NTHI0881	-	hypothetical protein
774	 32.88	-1	845605..846045	+	146	68249324	-	NTHI0882	-	hypothetical protein
775	 36.36	0	846107..846733	-	208	68249325	narP	NTHI0883	-	nitrate/nitrite response regulator protein
776	 39.82	0	846939..848186	-	415	68249326	lysA	NTHI0884	-	diaminopimelate decarboxylase
777	 33.33	-1	848234..848365	-	43	68249327	-	NTHI0885	-	hypothetical protein
778	 38.56	0	848448..848753	+	101	68249328	cyaY	NTHI0886	-	frataxin-like protein
779	 39.84	0	848755..850614	+	619	68249329	recQ	NTHI0887	-	ATP-dependent DNA helicase RecQ
780	 42.87	+1	850699..852417	+	572	68249330	proS	NTHI0888	-	prolyl-tRNA synthetase
781	 36.70	0	852505..854853	-	782	68249331	ostA	NTHI0889	-	organic solvent tolerance protein
782	 40.85	0	854976..856385	-	469	68249332	sufI	NTHI0890	-	hypothetical protein
783	 38.31	0	856387..857109	-	240	68249333	plsC	NTHI0891	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
784	 35.99	0	857195..857908	+	237	68249334	lpxH	NTHI0892	-	UDP-2,3-diacylglucosamine hydrolase
785	 41.26	0	858138..859664	-	508	68249335	-	NTHI0893	-	putative sodium-dependent transporter
786	 43.22	+1	859911..860537	+	208	68249336	ilvG	NTHI0894	-	acetolactate synthase isozyme II large subunit
787	 43.77	+1	860579..862417	+	612	68249337	ilvD	NTHI0895	-	dihydroxy-acid dehydratase
788	 40.60	0	862497..864038	+	513	68249338	thd1	NTHI0896	-	threonine dehydratase
789	 41.81	0	864076..867555	-	1159	68249339	dnaE	NTHI0897	-	DNA polymerase III subunit alpha
790	 41.61	0	867794..869437	+	547	68249340	pgmB	NTHI0899	-	phosphoglucomutase
791	 37.06	0	869604..870113	-	169	68249341	secB	NTHI0900	-	preprotein translocase subunit SecB
792	 33.78	-1	870127..870573	-	148	68249342	-	NTHI0901	-	rhodanese-related sulfurtransferase
793	 40.06	0	870821..872143	+	440	68249343	dcuB	NTHI0902	-	anaerobic C4-dicarboxylate transporter
794	 36.33	0	872347..873681	+	444	68249344	ndhA	NTHI0903	-	NADH dehydrogenase
795	 35.96	0	873761..876193	-	810	68249345	plsB	NTHI0904	-	glycerol-3-phosphate acyltransferase
796	 38.25	0	876442..877071	+	209	68249346	lexA	NTHI0905	-	LexA repressor
797	 39.39	0	877214..878038	+	274	68249347	dapF	NTHI0906	-	diaminopimelate epimerase
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.