IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
626	 37.53	0	666112..666492	+	126	68249176	-	NTHI0709	-	hypothetical protein
627	 33.33	-1	666489..666848	+	119	68249177	-	NTHI0710	-	hypothetical protein
628	 30.21	-2	666857..667144	+	95	68249178	-	NTHI0711	-	hypothetical protein
629	 43.21	+1	667275..668459	-	394	68249179	tuf	NTHI0712	-	elongation factor Tu
630	 33.01	-1	669165..670088	+	307	68249180	coaA	NTHI0713	-	pantothenate kinase
631	 35.02	0	670179..671126	-	315	68249181	rseB	NTHI0716	-	periplasmic negative regulator of sigmaE
632	 39.93	0	671206..671781	-	191	68249182	rseA	NTHI0718	-	sigma-E factor negative regulatory protein
633	 39.82	0	671806..672375	-	189	68249183	rpoE	NTHI0719	-	RNA polymerase sigma factor RpoE
634	 29.07	-2	672484..672741	-	85	68249184	-	NTHI0720	-	hypothetical protein
635	 33.07	-1	672831..673217	-	128	68249185	mscL	NTHI0721	-	large-conductance mechanosensitive channel
636	 39.22	0	673290..674666	-	458	68249186	trkA	NTHI0722	-	potassium transporter peripheral membrane component
637	 40.35	0	674679..676031	-	450	68249187	sun	NTHI0723	-	SUN protein
638	 38.87	0	676031..676987	-	318	68249188	fmt	NTHI0724	-	methionyl-tRNA formyltransferase
639	 36.86	0	677088..677597	-	169	68249189	def	NTHI0725	-	peptide deformylase
640	 28.08	-2	677787..678224	-	145	68249190	-	NTHI0726	-	hypothetical protein
641	 33.33	-1	678202..678387	-	61	68249191	-	NTHI0727	-	hypothetical protein
642	 31.50	-1	684668..685321	-	217	68249192	sxy	NTHI0728	-	DNA transformation protein TfoX
643	 38.87	0	685693..686757	+	354	68249193	recA	NTHI0729	-	recombinase A
644	 33.55	-1	686836..687294	+	152	68249194	recX	NTHI0730	-	recombination regulator RecX
645	 31.78	-1	687291..687677	-	128	68249195	ccrB	NTHI0731	-	camphor resistance protein CrcB
646	 36.63	0	687677..688495	-	272	68249196	-	NTHI0732	-	HAD superfamily hydrolase
647	 39.00	0	688898..689902	+	334	68249197	argF	NTHI0733	-	ornithine carbamoyltransferase
648	 40.41	0	689912..690844	+	310	68249198	arcC	NTHI0734	-	carbamate kinase
649	 39.67	0	690949..692478	+	509	68249199	-	NTHI0735	-	hypothetical protein
650	 36.31	0	697114..697818	+	234	68249200	pepE	NTHI0738	-	peptidase E
651	 40.20	0	697836..699131	+	431	68249201	-	NTHI0739	-	C4-dicarboxylate transporter
652	 37.50	0	699203..700474	+	423	68249202	abgA	NTHI0740	-	aminobenzoyl-glutamate utilization protein A
653	 38.40	0	700567..702540	+	657	68249203	cpdB	NTHI0741	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
654	 29.41	-2	702649..703056	-	135	68249204	-	NTHI0742	-	HTH-type transcriptional regulator
655	 33.78	-1	703066..703743	-	225	68249205	-	NTHI0743	-	zinc transporter ZitB
656	 40.00	0	704251..706140	+	629	68249206	gidA	NTHI0744	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
657	 43.47	+1	706322..706696	+	124	68249207	rpsL	NTHI0745	-	30S ribosomal protein S12
658	 42.46	+1	706853..707323	+	156	68249208	rpsG,	NTHI0746	-	30S ribosomal protein S7
659	 40.94	0	707407..709509	+	700	68249209	fusA	NTHI0747	-	elongation factor G
660	 43.46	+1	709574..710758	+	394	68249210	tuf	NTHI0748	-	elongation factor Tu
661	 41.74	0	711218..711562	+	114	68249211	-	NTHI0749	-	chloride channel protein
662	 44.81	+1	711553..711735	+	60	68249212	-	NTHI0751	-	chloride channel protein
663	 41.16	0	711738..712721	+	327	68249213	dusA	NTHI0753	-	tRNA-dihydrouridine synthase A
664	 34.71	-1	712769..713059	-	96	68249214	-	NTHI0754	-	hypothetical protein
665	 38.48	0	713082..714092	-	336	68249215	trpS	NTHI0755	-	tryptophanyl-tRNA synthetase
666	 38.35	0	714215..714832	+	205	68249216	-	NTHI0757	-	hypothetical protein
667	 38.51	0	714855..716225	+	456	68249217	purB	NTHI0758	-	adenylosuccinate lyase
668	 42.48	+1	716497..716988	+	163	68249218	rplJ	NTHI0759	-	50S ribosomal protein L10
669	 41.13	0	717043..717414	+	123	68249219	rplL	NTHI0761	-	50S ribosomal protein L7/L12
670	 38.51	0	717573..718943	+	456	68249220	glmU	NTHI0762	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
671	 30.45	-2	718978..719289	-	103	68249221	-	NTHI0763	-	hypothetical protein
672	 33.87	-1	719828..720763	-	311	68249222	pldB	NTHI0764	-	lysophospholipase L2
673	 40.86	0	720817..721932	-	371	68249223	asd	NTHI0765	-	aspartate-semialdehyde dehydrogenase
674	 40.03	0	722098..722814	-	238	68249224	-	NTHI0766	-	hypothetical protein
675	 39.57	0	723006..723662	+	218	68249225	-	NTHI0767	-	2-methylthioadenine synthetase
676	 44.21	+1	723726..724304	-	192	68249226	mdaB	NTHI0768	-	putative NADPH-quinone reductase, modulator of drug activity B
677	 40.74	0	724583..726595	-	670	68249227	rep	NTHI0769	-	ATP-dependent DNA helicase
678	 38.97	0	726601..726813	-	70	68249228	-	NTHI0770	-	periplasmic lipoprotein
679	 42.25	+1	726810..727280	-	156	68249229	coaD	NTHI0771	-	phosphopantetheine adenylyltransferase
680	 40.03	0	727277..728560	-	427	68249230	kdtA	NTHI0772	-	3-deoxy-D-manno-octulosonic-acid transferase
681	 40.13	0	728623..729387	+	254	68249231	lgtF	NTHI0773	-	UDP-glucose--lipooligosaccharide glucosyltransferase
682	 39.72	0	729384..729947	-	187	68249232	tag	NTHI0774	-	DNA-3-methyladenine glycosylase
683	 33.33	-1	730062..730814	-	250	68249233	-	NTHI0775	-	hypothetical protein
684	 40.52	0	730826..731632	-	268	68249234	aroE	NTHI0776	-	shikimate 5-dehydrogenase
685	 43.30	+1	731636..732187	-	183	68249235	-	NTHI0777	-	translation factor SUA5
686	 38.36	0	732203..732739	-	178	68249236	-	NTHI0778	-	zinc finger domain-containing protein
687	 40.48	0	732749..734665	-	638	68249237	-	NTHI0779	-	ABC transporter ATP-binding protein
688	 37.71	0	734850..735146	-	98	68249238	-	NTHI0780	-	putative HTH-type transcriptional regulator
689	 32.79	-1	735139..735321	-	60	68249239	-	NTHI0781	-	hypothetical protein
690	 33.84	-1	735591..738569	-	992	68249240	hgpB	NTHI0782	-	hemoglobin-haptoglobin binding protein B
691	 39.52	0	739300..741045	+	581	68249241	-	NTHI0783	-	ABC transporter ATP-binding protein
692	 39.30	0	741038..742696	+	552	68249242	-	NTHI0785	-	ABC transporter ATP-binding protein
693	 34.50	-1	742780..743811	-	343	68249243	-	NTHI0786	-	hypothetical protein
694	 40.19	0	743808..744128	-	106	68249244	-	NTHI0787	-	hypothetical protein
695	 36.89	0	744116..744424	-	102	68249245	-	NTHI0788	-	putative HTH-type transcriptional regulator
696	 41.52	0	744629..745630	-	333	68249246	glpX	NTHI0789	-	fructose 1,6-bisphosphatase II
697	 30.59	-2	745792..746010	+	72	68249247	-	NTHI0790	-	hypothetical protein
698	 39.00	0	746109..746549	+	146	68249248	mioC	NTHI0791	-	flavodoxin
699	 38.62	0	746546..746980	+	144	68249249	dtd	NTHI0792	-	D-tyrosyl-tRNA deacylase
700	 41.09	0	747287..747763	-	158	68249250	ispF	NTHI0793	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
701	 40.56	0	747760..748437	-	225	68249251	ispD	NTHI0794	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
702	 31.54	-1	748437..748715	-	92	68249252	ftsB	NTHI0795	-	cell division protein FtsB
703	 41.45	0	748838..749305	-	155	68249253	gpt	NTHI0796	-	xanthine-guanine phosphoribosyltransferase
704	 40.62	0	749416..750870	+	484	68249254	pepD	NTHI0797	-	aminoacyl-histidine dipeptidase
705	 40.20	0	750923..751810	-	295	68249255	xerC	NTHI0798	-	site-specific tyrosine recombinase XerC
706	 37.41	0	751804..752244	-	146	68249256	-	NTHI0799	-	hypothetical protein
707	 42.80	+1	752410..753201	+	263	68249257	tpiA	NTHI0800	-	triosephosphate isomerase
708	 37.42	0	753283..753600	-	105	68249258	glpE	NTHI0801	-	thiosulfate sulfurtransferase GlpE
709	 35.04	0	753601..754479	-	292	68249259	-	NTHI0802	-	hypothetical protein
710	 40.16	0	754511..755389	-	292	68249260	ilvY	NTHI0803	-	DNA-binding transcriptional regulator IlvY
711	 40.09	0	756073..757551	+	492	68249261	ilvC	NTHI0804	-	ketol-acid reductoisomerase
712	 36.14	0	757662..758942	-	426	68249262	glpC	NTHI0805	-	sn-glycerol-3-phosphate dehydrogenase subunit C
713	 39.65	0	758953..760251	-	432	68249263	glpB	NTHI0806	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
714	 43.97	+1	760241..761932	-	563	68249264	glpA	NTHI0808	-	sn-glycerol-3-phosphate dehydrogenase subunit A
715	 41.23	0	762225..763667	+	480	68249265	glpT	NTHI0809	-	glycerol-3-phosphate transporter
716	 35.98	0	763771..764865	+	364	68249266	glpQ	NTHI0811	-	glycerophosphodiester phosphodiesterase
717	 43.52	+1	765095..765889	+	264	68249267	glpF	NTHI0812	-	glycerol uptake facilitator protein
718	 42.66	+1	765910..767421	+	503	68249268	glpK	NTHI0813	-	glycerol kinase
719	 41.03	0	767505..767972	-	155	68249269	gpt2	NTHI0814	-	xanthine-guanine phosphoribosyltransferase
720	 40.36	0	768257..769081	+	274	68249270	hel	NTHI0816	-	Outer membrane protein P4, NADP phosphatase
721	 37.57	0	769248..769931	+	227	68249271	rluE	NTHI0817	-	hypothetical protein
722	 38.02	0	771036..774920	-	1294	68249272	-	NTHI0820	-	hypothetical protein
723	 39.44	0	774930..776666	-	578	68249273	-	NTHI0821	-	hypothetical protein
724	 43.80	+1	776817..777389	-	190	68249274	slyD	NTHI0822	-	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD
725	 37.12	0	777467..777889	-	140	68249275	-	NTHI0823	-	hypothetical protein
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.