IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
582	 43.75	+1	627260..628075	-	271	68249132	ureH	NTHI0661	-	urease accessory protein UreH
583	 43.81	+1	628150..628827	-	225	68249133	ureG	NTHI0662	-	urease accessory protein
584	 47.60	+2	628930..629637	-	235	68249134	ureF	NTHI0663	-	urease accessory protein UreF
585	 42.83	+1	629622..630179	-	185	68249135	ureE	NTHI0664	-	urease accessory protein UreE
586	 44.21	+1	630307..632025	-	572	68249136	ureC	NTHI0665	-	urease subunit alpha
587	 41.18	0	632037..632342	-	101	68249137	ureB	NTHI0666	-	urease subunit beta
588	 43.89	+1	632419..632721	-	100	68249138	ureA	NTHI0667	-	urease subunit gamma
589	 40.21	0	632884..633174	+	96	68249139	groES	NTHI0668	-	co-chaperonin GroES
590	 41.51	0	633197..634834	+	545	68249140	groEL	NTHI0669	-	chaperonin GroEL
591	 42.89	+1	635008..635457	-	149	68249141	rplI	NTHI0670	-	50S ribosomal protein L9
592	 41.67	0	635474..635701	-	75	68249142	rpsR	NTHI0671	-	30S ribosomal protein S18
593	 35.47	0	635714..636040	-	108	68249143	priB	NTHI0672	-	primosomal replication protein N
594	 43.39	+1	636027..636404	-	125	68249144	rpsF	NTHI0673	-	30S ribosomal protein S6
595	 38.82	0	636596..636850	-	84	68249145	infA	NTHI0674	-	translation initiation factor IF-1
596	 40.97	0	638183..639046	+	287	68249146	ksgA	NTHI0676	-	dimethyladenosine transferase
597	 28.22	-2	639086..640024	-	312	68249147	lic2A	NTHI0677	-	UDP-Gal--lipooligosaccharide galactosyltransferase
598	 39.49	0	640077..640904	+	275	68249148	apaH	NTHI0679	-	diadenosine tetraphosphatase
599	 37.82	0	640914..641537	+	207	68249149	-	NTHI0680	-	hypothetical protein
600	 41.44	0	641663..643117	-	484	68249150	gnd	NTHI0681	-	6-phosphogluconate dehydrogenase
601	 30.57	-2	643233..643775	-	180	68249151	-	NTHI0683	-	hypothetical protein
602	 40.74	0	643858..644046	-	62	68249152	-	NTHI0684	-	hypothetical protein
603	 38.91	0	644116..644814	-	232	161761278	devB	NTHI0685	-	6-phosphogluconolactonase
604	 41.28	0	644957..646441	-	494	68249154	zwf	NTHI0686	-	glucose-6-phosphate 1-dehydrogenase
605	 38.89	0	646517..647326	-	269	68249155	cysQ	NTHI0687	-	CysQ
606	 38.13	0	647331..647747	-	138	68249156	-	NTHI0688	-	hypothetical protein
607	 40.54	0	647804..649786	-	660	68249157	-	NTHI0689	-	hypothetical protein
608	 38.89	0	650015..650410	+	131	68249158	hslR	NTHI0690	-	heat shock protein 15-like protein
609	 34.44	-1	650436..650888	-	150	68249159	asnC	NTHI0691	-	DNA-binding transcriptional regulator AsnC
610	 38.47	0	651042..652034	+	330	68249160	asnA	NTHI0692	-	asparagine synthetase AsnA
611	 35.59	0	652097..652450	-	117	68249161	-	NTHI0693	-	putative transposase-like protein
612	 32.52	-1	653063..653920	+	285	68249162	-	NTHI0694	-	hypothetical protein
613	 42.74	+1	654077..654193	-	38	68249163	-	NTHI0695	-	hypothetical protein
614	 46.81	+2	654485..654625	+	46	68249164	-	NTHI0696	-	hypothetical protein
615	 39.11	0	654805..655479	-	224	68249165	gph	NTHI0697	-	phosphoglycolate phosphatase
616	 40.85	0	655525..656229	-	234	68249166	rpe	NTHI0698	-	ribulose-phosphate 3-epimerase
617	 41.26	0	656351..658771	-	806	68249167	gyrB	NTHI0699	-	DNA gyrase subunit B
618	 42.24	+1	658897..661209	-	770	68249168	-	NTHI0701	-	transcriptional accessory protein
619	 40.25	0	661305..661781	+	158	68249169	greB	NTHI0702	-	transcription elongation factor GreB
620	 41.26	0	661851..662468	-	205	68249170	-	NTHI0703	-	DNA-binding transcriptional repressor FabR
621	 40.07	0	662468..663373	-	301	68249171	oxyR	NTHI0704	-	DNA-binding transcriptional regulator OxyR
622	 39.94	0	663496..664221	+	241	68249172	pdgX	NTHI0705	-	peroxiredoxin/glutaredoxin
623	 32.88	-1	664313..664534	-	73	68249173	slyX	NTHI0706	-	hypothetical protein
624	 35.95	0	664632..665357	+	241	68249174	fkbY	NTHI0707	-	FKBP-type peptidyl-prolyl cis-trans isomerase
625	 37.39	0	665447..666112	+	221	68249175	-	NTHI0708	-	hypothetical protein
626	 37.53	0	666112..666492	+	126	68249176	-	NTHI0709	-	hypothetical protein
627	 33.33	-1	666489..666848	+	119	68249177	-	NTHI0710	-	hypothetical protein
628	 30.21	-2	666857..667144	+	95	68249178	-	NTHI0711	-	hypothetical protein
629	 43.21	+1	667275..668459	-	394	68249179	tuf	NTHI0712	-	elongation factor Tu
630	 33.01	-1	669165..670088	+	307	68249180	coaA	NTHI0713	-	pantothenate kinase
631	 35.02	0	670179..671126	-	315	68249181	rseB	NTHI0716	-	periplasmic negative regulator of sigmaE
632	 39.93	0	671206..671781	-	191	68249182	rseA	NTHI0718	-	sigma-E factor negative regulatory protein
633	 39.82	0	671806..672375	-	189	68249183	rpoE	NTHI0719	-	RNA polymerase sigma factor RpoE
634	 29.07	-2	672484..672741	-	85	68249184	-	NTHI0720	-	hypothetical protein
635	 33.07	-1	672831..673217	-	128	68249185	mscL	NTHI0721	-	large-conductance mechanosensitive channel
636	 39.22	0	673290..674666	-	458	68249186	trkA	NTHI0722	-	potassium transporter peripheral membrane component
637	 40.35	0	674679..676031	-	450	68249187	sun	NTHI0723	-	SUN protein
638	 38.87	0	676031..676987	-	318	68249188	fmt	NTHI0724	-	methionyl-tRNA formyltransferase
639	 36.86	0	677088..677597	-	169	68249189	def	NTHI0725	-	peptide deformylase
640	 28.08	-2	677787..678224	-	145	68249190	-	NTHI0726	-	hypothetical protein
641	 33.33	-1	678202..678387	-	61	68249191	-	NTHI0727	-	hypothetical protein
642	 31.50	-1	684668..685321	-	217	68249192	sxy	NTHI0728	-	DNA transformation protein TfoX
643	 38.87	0	685693..686757	+	354	68249193	recA	NTHI0729	-	recombinase A
644	 33.55	-1	686836..687294	+	152	68249194	recX	NTHI0730	-	recombination regulator RecX
645	 31.78	-1	687291..687677	-	128	68249195	ccrB	NTHI0731	-	camphor resistance protein CrcB
646	 36.63	0	687677..688495	-	272	68249196	-	NTHI0732	-	HAD superfamily hydrolase
647	 39.00	0	688898..689902	+	334	68249197	argF	NTHI0733	-	ornithine carbamoyltransferase
648	 40.41	0	689912..690844	+	310	68249198	arcC	NTHI0734	-	carbamate kinase
649	 39.67	0	690949..692478	+	509	68249199	-	NTHI0735	-	hypothetical protein
650	 36.31	0	697114..697818	+	234	68249200	pepE	NTHI0738	-	peptidase E
651	 40.20	0	697836..699131	+	431	68249201	-	NTHI0739	-	C4-dicarboxylate transporter
652	 37.50	0	699203..700474	+	423	68249202	abgA	NTHI0740	-	aminobenzoyl-glutamate utilization protein A
653	 38.40	0	700567..702540	+	657	68249203	cpdB	NTHI0741	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
654	 29.41	-2	702649..703056	-	135	68249204	-	NTHI0742	-	HTH-type transcriptional regulator
655	 33.78	-1	703066..703743	-	225	68249205	-	NTHI0743	-	zinc transporter ZitB
656	 40.00	0	704251..706140	+	629	68249206	gidA	NTHI0744	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
657	 43.47	+1	706322..706696	+	124	68249207	rpsL	NTHI0745	-	30S ribosomal protein S12
658	 42.46	+1	706853..707323	+	156	68249208	rpsG,	NTHI0746	-	30S ribosomal protein S7
659	 40.94	0	707407..709509	+	700	68249209	fusA	NTHI0747	-	elongation factor G
660	 43.46	+1	709574..710758	+	394	68249210	tuf	NTHI0748	-	elongation factor Tu
661	 41.74	0	711218..711562	+	114	68249211	-	NTHI0749	-	chloride channel protein
662	 44.81	+1	711553..711735	+	60	68249212	-	NTHI0751	-	chloride channel protein
663	 41.16	0	711738..712721	+	327	68249213	dusA	NTHI0753	-	tRNA-dihydrouridine synthase A
664	 34.71	-1	712769..713059	-	96	68249214	-	NTHI0754	-	hypothetical protein
665	 38.48	0	713082..714092	-	336	68249215	trpS	NTHI0755	-	tryptophanyl-tRNA synthetase
666	 38.35	0	714215..714832	+	205	68249216	-	NTHI0757	-	hypothetical protein
667	 38.51	0	714855..716225	+	456	68249217	purB	NTHI0758	-	adenylosuccinate lyase
668	 42.48	+1	716497..716988	+	163	68249218	rplJ	NTHI0759	-	50S ribosomal protein L10
669	 41.13	0	717043..717414	+	123	68249219	rplL	NTHI0761	-	50S ribosomal protein L7/L12
670	 38.51	0	717573..718943	+	456	68249220	glmU	NTHI0762	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
671	 30.45	-2	718978..719289	-	103	68249221	-	NTHI0763	-	hypothetical protein
672	 33.87	-1	719828..720763	-	311	68249222	pldB	NTHI0764	-	lysophospholipase L2
673	 40.86	0	720817..721932	-	371	68249223	asd	NTHI0765	-	aspartate-semialdehyde dehydrogenase
674	 40.03	0	722098..722814	-	238	68249224	-	NTHI0766	-	hypothetical protein
675	 39.57	0	723006..723662	+	218	68249225	-	NTHI0767	-	2-methylthioadenine synthetase
676	 44.21	+1	723726..724304	-	192	68249226	mdaB	NTHI0768	-	putative NADPH-quinone reductase, modulator of drug activity B
677	 40.74	0	724583..726595	-	670	68249227	rep	NTHI0769	-	ATP-dependent DNA helicase
678	 38.97	0	726601..726813	-	70	68249228	-	NTHI0770	-	periplasmic lipoprotein
679	 42.25	+1	726810..727280	-	156	68249229	coaD	NTHI0771	-	phosphopantetheine adenylyltransferase
680	 40.03	0	727277..728560	-	427	68249230	kdtA	NTHI0772	-	3-deoxy-D-manno-octulosonic-acid transferase
681	 40.13	0	728623..729387	+	254	68249231	lgtF	NTHI0773	-	UDP-glucose--lipooligosaccharide glucosyltransferase
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.