IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
552	 37.35	0	589753..590724	+	323	68249102	rbsC	NTHI0631	-	ribose ABC transporter permease protein
553	 39.93	0	590744..591622	+	292	68249103	rbsB	NTHI0632	-	D-ribose transporter subunit RbsB
554	 43.21	+1	591720..592640	+	306	68249104	rbsK	NTHI0633	-	ribokinase
555	 41.04	0	592668..593666	+	332	68249105	rbsR	NTHI0634	-	ribose operon repressor
556	 36.41	0	593772..594323	+	183	68249106	-	NTHI0635	-	hypothetical protein
557	 41.10	0	594463..594951	-	162	68249107	menG	NTHI0636	-	ribonuclease activity regulator protein RraA
558	 39.23	0	595003..595935	-	310	68249108	menA	NTHI0637	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
559	 42.36	+1	595982..596701	+	239	68249109	-	NTHI0638	-	hypothetical protein
560	 35.66	0	596754..597740	-	328	68249110	tehA	NTHI0639	-	potassium-tellurite ethidium and proflavin transporter
561	 41.40	0	597892..602142	-	1416	68249111	rpoC	NTHI0640	-	DNA-directed RNA polymerase subunit beta'
562	 39.68	0	602349..606380	-	1343	68249112	rpoB	NTHI0641	-	DNA-directed RNA polymerase subunit beta
563	 38.99	0	606764..607453	-	229	68249113	rplA	NTHI0642	-	50S ribosomal protein L1
564	 41.03	0	607458..607886	-	142	68249114	rplK	NTHI0643	-	50S ribosomal protein L11
565	 39.05	0	608059..608775	-	238	68249115	deoD	NTHI0644	-	purine nucleoside phosphorylase
566	 41.23	0	608859..610112	-	417	68249116	-	NTHI0645	-	nucleoside permease
567	 38.91	0	610211..610999	-	262	68249117	-	NTHI0646	-	pyruvate-formate lyase-activating enzyme
568	 41.17	0	611008..612552	-	514	68249118	-	NTHI0647	-	hypothetical protein
569	 39.73	0	612765..613421	+	218	68249119	-	NTHI0648	-	hypothetical protein
570	 38.19	0	613377..614447	-	356	68249120	waaQ	NTHI0649	-	ADP-heptose--lipooligosaccharide heptosyltransferase III
571	 40.65	0	614485..615564	-	359	68249121	fba	NTHI0650	-	fructose-bisphosphate aldolase
572	 40.22	0	615675..616835	-	386	68249122	pgk	NTHI0651	-	phosphoglycerate kinase
573	 37.61	0	616931..617725	-	264	68249123	-	NTHI0652	-	ribonuclease I
574	 42.91	+1	617803..618063	+	86	68249124	-	NTHI0653	-	putative ferredoxin-like protein
575	 40.46	0	618197..619417	-	406	68249125	tyrQ	NTHI0654	-	tyrosine-specific transport protein 2
576	 38.49	0	619454..620035	-	193	68249126	tdk	NTHI0655	-	thymidine kinase
577	 42.08	+1	620044..621072	-	342	68249127	gcp	NTHI0656	-	O-sialoglycoprotein endopeptidase
578	 42.59	+1	621304..621519	+	71	68249128	rpsU	NTHI0657	-	30S ribosomal protein S21
579	 39.56	0	621653..623434	+	593	68249129	dnaG	NTHI0658	-	DNA primase
580	 37.93	0	623505..625376	+	623	68249130	rpoD	NTHI0659	-	RNA polymerase sigma factor RpoD
581	 37.75	0	625686..627113	-	475	68249131	aspA	NTHI0660	-	aspartate ammonia-lyase
582	 43.75	+1	627260..628075	-	271	68249132	ureH	NTHI0661	-	urease accessory protein UreH
583	 43.81	+1	628150..628827	-	225	68249133	ureG	NTHI0662	-	urease accessory protein
584	 47.60	+2	628930..629637	-	235	68249134	ureF	NTHI0663	-	urease accessory protein UreF
585	 42.83	+1	629622..630179	-	185	68249135	ureE	NTHI0664	-	urease accessory protein UreE
586	 44.21	+1	630307..632025	-	572	68249136	ureC	NTHI0665	-	urease subunit alpha
587	 41.18	0	632037..632342	-	101	68249137	ureB	NTHI0666	-	urease subunit beta
588	 43.89	+1	632419..632721	-	100	68249138	ureA	NTHI0667	-	urease subunit gamma
589	 40.21	0	632884..633174	+	96	68249139	groES	NTHI0668	-	co-chaperonin GroES
590	 41.51	0	633197..634834	+	545	68249140	groEL	NTHI0669	-	chaperonin GroEL
591	 42.89	+1	635008..635457	-	149	68249141	rplI	NTHI0670	-	50S ribosomal protein L9
592	 41.67	0	635474..635701	-	75	68249142	rpsR	NTHI0671	-	30S ribosomal protein S18
593	 35.47	0	635714..636040	-	108	68249143	priB	NTHI0672	-	primosomal replication protein N
594	 43.39	+1	636027..636404	-	125	68249144	rpsF	NTHI0673	-	30S ribosomal protein S6
595	 38.82	0	636596..636850	-	84	68249145	infA	NTHI0674	-	translation initiation factor IF-1
596	 40.97	0	638183..639046	+	287	68249146	ksgA	NTHI0676	-	dimethyladenosine transferase
597	 28.22	-2	639086..640024	-	312	68249147	lic2A	NTHI0677	-	UDP-Gal--lipooligosaccharide galactosyltransferase
598	 39.49	0	640077..640904	+	275	68249148	apaH	NTHI0679	-	diadenosine tetraphosphatase
599	 37.82	0	640914..641537	+	207	68249149	-	NTHI0680	-	hypothetical protein
600	 41.44	0	641663..643117	-	484	68249150	gnd	NTHI0681	-	6-phosphogluconate dehydrogenase
601	 30.57	-2	643233..643775	-	180	68249151	-	NTHI0683	-	hypothetical protein
602	 40.74	0	643858..644046	-	62	68249152	-	NTHI0684	-	hypothetical protein
603	 38.91	0	644116..644814	-	232	161761278	devB	NTHI0685	-	6-phosphogluconolactonase
604	 41.28	0	644957..646441	-	494	68249154	zwf	NTHI0686	-	glucose-6-phosphate 1-dehydrogenase
605	 38.89	0	646517..647326	-	269	68249155	cysQ	NTHI0687	-	CysQ
606	 38.13	0	647331..647747	-	138	68249156	-	NTHI0688	-	hypothetical protein
607	 40.54	0	647804..649786	-	660	68249157	-	NTHI0689	-	hypothetical protein
608	 38.89	0	650015..650410	+	131	68249158	hslR	NTHI0690	-	heat shock protein 15-like protein
609	 34.44	-1	650436..650888	-	150	68249159	asnC	NTHI0691	-	DNA-binding transcriptional regulator AsnC
610	 38.47	0	651042..652034	+	330	68249160	asnA	NTHI0692	-	asparagine synthetase AsnA
611	 35.59	0	652097..652450	-	117	68249161	-	NTHI0693	-	putative transposase-like protein
612	 32.52	-1	653063..653920	+	285	68249162	-	NTHI0694	-	hypothetical protein
613	 42.74	+1	654077..654193	-	38	68249163	-	NTHI0695	-	hypothetical protein
614	 46.81	+2	654485..654625	+	46	68249164	-	NTHI0696	-	hypothetical protein
615	 39.11	0	654805..655479	-	224	68249165	gph	NTHI0697	-	phosphoglycolate phosphatase
616	 40.85	0	655525..656229	-	234	68249166	rpe	NTHI0698	-	ribulose-phosphate 3-epimerase
617	 41.26	0	656351..658771	-	806	68249167	gyrB	NTHI0699	-	DNA gyrase subunit B
618	 42.24	+1	658897..661209	-	770	68249168	-	NTHI0701	-	transcriptional accessory protein
619	 40.25	0	661305..661781	+	158	68249169	greB	NTHI0702	-	transcription elongation factor GreB
620	 41.26	0	661851..662468	-	205	68249170	-	NTHI0703	-	DNA-binding transcriptional repressor FabR
621	 40.07	0	662468..663373	-	301	68249171	oxyR	NTHI0704	-	DNA-binding transcriptional regulator OxyR
622	 39.94	0	663496..664221	+	241	68249172	pdgX	NTHI0705	-	peroxiredoxin/glutaredoxin
623	 32.88	-1	664313..664534	-	73	68249173	slyX	NTHI0706	-	hypothetical protein
624	 35.95	0	664632..665357	+	241	68249174	fkbY	NTHI0707	-	FKBP-type peptidyl-prolyl cis-trans isomerase
625	 37.39	0	665447..666112	+	221	68249175	-	NTHI0708	-	hypothetical protein
626	 37.53	0	666112..666492	+	126	68249176	-	NTHI0709	-	hypothetical protein
627	 33.33	-1	666489..666848	+	119	68249177	-	NTHI0710	-	hypothetical protein
628	 30.21	-2	666857..667144	+	95	68249178	-	NTHI0711	-	hypothetical protein
629	 43.21	+1	667275..668459	-	394	68249179	tuf	NTHI0712	-	elongation factor Tu
630	 33.01	-1	669165..670088	+	307	68249180	coaA	NTHI0713	-	pantothenate kinase
631	 35.02	0	670179..671126	-	315	68249181	rseB	NTHI0716	-	periplasmic negative regulator of sigmaE
632	 39.93	0	671206..671781	-	191	68249182	rseA	NTHI0718	-	sigma-E factor negative regulatory protein
633	 39.82	0	671806..672375	-	189	68249183	rpoE	NTHI0719	-	RNA polymerase sigma factor RpoE
634	 29.07	-2	672484..672741	-	85	68249184	-	NTHI0720	-	hypothetical protein
635	 33.07	-1	672831..673217	-	128	68249185	mscL	NTHI0721	-	large-conductance mechanosensitive channel
636	 39.22	0	673290..674666	-	458	68249186	trkA	NTHI0722	-	potassium transporter peripheral membrane component
637	 40.35	0	674679..676031	-	450	68249187	sun	NTHI0723	-	SUN protein
638	 38.87	0	676031..676987	-	318	68249188	fmt	NTHI0724	-	methionyl-tRNA formyltransferase
639	 36.86	0	677088..677597	-	169	68249189	def	NTHI0725	-	peptide deformylase
640	 28.08	-2	677787..678224	-	145	68249190	-	NTHI0726	-	hypothetical protein
641	 33.33	-1	678202..678387	-	61	68249191	-	NTHI0727	-	hypothetical protein
642	 31.50	-1	684668..685321	-	217	68249192	sxy	NTHI0728	-	DNA transformation protein TfoX
643	 38.87	0	685693..686757	+	354	68249193	recA	NTHI0729	-	recombinase A
644	 33.55	-1	686836..687294	+	152	68249194	recX	NTHI0730	-	recombination regulator RecX
645	 31.78	-1	687291..687677	-	128	68249195	ccrB	NTHI0731	-	camphor resistance protein CrcB
646	 36.63	0	687677..688495	-	272	68249196	-	NTHI0732	-	HAD superfamily hydrolase
647	 39.00	0	688898..689902	+	334	68249197	argF	NTHI0733	-	ornithine carbamoyltransferase
648	 40.41	0	689912..690844	+	310	68249198	arcC	NTHI0734	-	carbamate kinase
649	 39.67	0	690949..692478	+	509	68249199	-	NTHI0735	-	hypothetical protein
650	 36.31	0	697114..697818	+	234	68249200	pepE	NTHI0738	-	peptidase E
651	 40.20	0	697836..699131	+	431	68249201	-	NTHI0739	-	C4-dicarboxylate transporter
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.