IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
508	 41.67	0	547283..547942	-	219	68249058	tdk	NTHI0586	-	thymidylate kinase
509	 36.40	0	547932..548975	-	347	68249059	-	NTHI0587	-	periplasmic solute-binding protein
510	 36.73	0	549045..549986	-	313	68249060	surA	NTHI0588	-	survival protein SurA-like protein
511	 36.11	0	550056..550595	-	179	68249061	pyrR	NTHI0589	-	pyrimidine regulatory protein PyrR
512	 38.64	0	550727..551518	+	263	68249062	mazG	NTHI0591	-	nucleoside triphosphate pyrophosphohydrolase
513	 36.19	0	551568..552443	-	291	68249063	-	NTHI0592	-	hypothetical protein
514	 40.09	0	552636..555047	+	803	68249064	lon	NTHI0593	-	ATP-dependent protease La
515	 38.54	0	555164..556315	+	383	68249065	-	NTHI0594	-	coproporphyrinogen III oxidase
516	 39.70	0	556449..557108	+	219	68249066	rpiA	NTHI0595	-	ribose-5-phosphate isomerase A
517	 40.55	0	557138..558370	+	410	68249067	serA	NTHI0596	-	D-3-phosphoglycerate dehydrogenase
518	 38.08	0	558413..559255	-	280	68249068	-	NTHI0597	-	aminomethyltransferase related to GcvT
519	 39.58	0	559265..560128	-	287	68249069	-	NTHI0598	-	hypothetical protein
520	 39.69	0	560577..561488	+	303	68249070	hisG	NTHI0599	-	ATP phosphoribosyltransferase
521	 42.52	+1	561581..562864	+	427	68249071	hisD	NTHI0600	-	histidinol dehydrogenase
522	 40.85	0	562933..564036	+	367	68249072	hisC	NTHI0601	-	histidinol-phosphate aminotransferase
523	 40.40	0	564148..565236	+	362	68249073	hisB	NTHI0602	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
524	 38.33	0	565302..565901	+	199	68249074	hisH	NTHI0603	-	imidazole glycerol phosphate synthase subunit HisH
525	 40.67	0	565937..566686	+	249	68249075	hisA	NTHI0604	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
526	 42.47	+1	566668..567444	+	258	68249076	hisF	NTHI0605	-	imidazole glycerol phosphate synthase subunit HisF
527	 37.09	0	567444..568109	+	221	68249077	hisI	NTHI0606	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
528	 20.92	-2	568191..568343	+	50	68249078	-	NTHI0606_1	-	hypothetical protein
529	 39.40	0	568373..569575	+	400	68249079	tyrP	NTHI0607	-	tyrosine-specific transport protein 1
530	 36.60	0	569761..570189	-	142	68249080	atpC	NTHI0608	-	F0F1 ATP synthase subunit epsilon
531	 39.96	0	570219..571592	-	457	68249081	atpD	NTHI0609	-	F0F1 ATP synthase subunit beta
532	 37.47	0	571609..572478	-	289	68249082	atpG	NTHI0610	-	F0F1 ATP synthase subunit gamma
533	 39.88	0	572494..574035	-	513	68249083	atpA	NTHI0611	-	F0F1 ATP synthase subunit alpha
534	 39.51	0	574048..574581	-	177	68249084	atpH	NTHI0612	-	F0F1 ATP synthase subunit delta
535	 37.58	0	574594..575064	-	156	68249085	atpF	NTHI0613	-	F0F1 ATP synthase subunit B
536	 36.47	0	575114..575368	-	84	68249086	atpE	NTHI0614	-	F0F1 ATP synthase subunit C
537	 35.74	0	575424..576212	-	262	68249087	atpB	NTHI0615	-	F0F1 ATP synthase subunit A
538	 28.80	-2	576249..576623	-	124	68249088	-	NTHI0616	-	F0F1 ATP synthase subunit I
539	 32.35	-1	576749..577360	-	203	68249089	gidB	NTHI0617	-	glucose-inhibited division protein B
540	 37.30	0	577500..577877	-	125	68249090	-	NTHI0618	-	hypothetical protein
541	 40.30	0	577993..578595	+	200	68249091	-	NTHI0619	-	putative phosphatase/phosphohexomutase
542	 35.86	0	578595..579068	+	157	68249092	-	NTHI0620	-	hypothetical protein
543	 36.31	0	579253..579756	+	167	68249093	luxS	NTHI0621	-	S-ribosylhomocysteinase
544	 38.42	0	580700..581407	-	235	68249094	aphA	NTHI0623	-	acid phosphatase/phosphotransferase
545	 41.67	0	581627..582154	+	175	68249095	hslV	NTHI0624	-	ATP-dependent protease peptidase subunit
546	 41.80	0	582165..583499	+	444	68249096	hslU	NTHI0625	-	ATP-dependent protease ATP-binding subunit
547	 36.75	0	583569..584621	-	350	68249097	potD2	NTHI0626	-	spermidine/putrescine-binding periplasmic protein 2 precursor
548	 38.73	0	584761..586056	+	431	68249098	ordL	NTHI0627	-	oxidoreductase OrdL
549	 38.18	0	586220..587662	+	480	68249099	rmuC	NTHI0628	-	DNA recombination protein RmuC
550	 36.67	0	587826..588245	+	139	68249100	rbsD	NTHI0629	-	D-ribose pyranase
551	 39.81	0	588259..589740	+	493	68249101	rbsA	NTHI0630	-	D-ribose transporter ATP binding protein
552	 37.35	0	589753..590724	+	323	68249102	rbsC	NTHI0631	-	ribose ABC transporter permease protein
553	 39.93	0	590744..591622	+	292	68249103	rbsB	NTHI0632	-	D-ribose transporter subunit RbsB
554	 43.21	+1	591720..592640	+	306	68249104	rbsK	NTHI0633	-	ribokinase
555	 41.04	0	592668..593666	+	332	68249105	rbsR	NTHI0634	-	ribose operon repressor
556	 36.41	0	593772..594323	+	183	68249106	-	NTHI0635	-	hypothetical protein
557	 41.10	0	594463..594951	-	162	68249107	menG	NTHI0636	-	ribonuclease activity regulator protein RraA
558	 39.23	0	595003..595935	-	310	68249108	menA	NTHI0637	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
559	 42.36	+1	595982..596701	+	239	68249109	-	NTHI0638	-	hypothetical protein
560	 35.66	0	596754..597740	-	328	68249110	tehA	NTHI0639	-	potassium-tellurite ethidium and proflavin transporter
561	 41.40	0	597892..602142	-	1416	68249111	rpoC	NTHI0640	-	DNA-directed RNA polymerase subunit beta'
562	 39.68	0	602349..606380	-	1343	68249112	rpoB	NTHI0641	-	DNA-directed RNA polymerase subunit beta
563	 38.99	0	606764..607453	-	229	68249113	rplA	NTHI0642	-	50S ribosomal protein L1
564	 41.03	0	607458..607886	-	142	68249114	rplK	NTHI0643	-	50S ribosomal protein L11
565	 39.05	0	608059..608775	-	238	68249115	deoD	NTHI0644	-	purine nucleoside phosphorylase
566	 41.23	0	608859..610112	-	417	68249116	-	NTHI0645	-	nucleoside permease
567	 38.91	0	610211..610999	-	262	68249117	-	NTHI0646	-	pyruvate-formate lyase-activating enzyme
568	 41.17	0	611008..612552	-	514	68249118	-	NTHI0647	-	hypothetical protein
569	 39.73	0	612765..613421	+	218	68249119	-	NTHI0648	-	hypothetical protein
570	 38.19	0	613377..614447	-	356	68249120	waaQ	NTHI0649	-	ADP-heptose--lipooligosaccharide heptosyltransferase III
571	 40.65	0	614485..615564	-	359	68249121	fba	NTHI0650	-	fructose-bisphosphate aldolase
572	 40.22	0	615675..616835	-	386	68249122	pgk	NTHI0651	-	phosphoglycerate kinase
573	 37.61	0	616931..617725	-	264	68249123	-	NTHI0652	-	ribonuclease I
574	 42.91	+1	617803..618063	+	86	68249124	-	NTHI0653	-	putative ferredoxin-like protein
575	 40.46	0	618197..619417	-	406	68249125	tyrQ	NTHI0654	-	tyrosine-specific transport protein 2
576	 38.49	0	619454..620035	-	193	68249126	tdk	NTHI0655	-	thymidine kinase
577	 42.08	+1	620044..621072	-	342	68249127	gcp	NTHI0656	-	O-sialoglycoprotein endopeptidase
578	 42.59	+1	621304..621519	+	71	68249128	rpsU	NTHI0657	-	30S ribosomal protein S21
579	 39.56	0	621653..623434	+	593	68249129	dnaG	NTHI0658	-	DNA primase
580	 37.93	0	623505..625376	+	623	68249130	rpoD	NTHI0659	-	RNA polymerase sigma factor RpoD
581	 37.75	0	625686..627113	-	475	68249131	aspA	NTHI0660	-	aspartate ammonia-lyase
582	 43.75	+1	627260..628075	-	271	68249132	ureH	NTHI0661	-	urease accessory protein UreH
583	 43.81	+1	628150..628827	-	225	68249133	ureG	NTHI0662	-	urease accessory protein
584	 47.60	+2	628930..629637	-	235	68249134	ureF	NTHI0663	-	urease accessory protein UreF
585	 42.83	+1	629622..630179	-	185	68249135	ureE	NTHI0664	-	urease accessory protein UreE
586	 44.21	+1	630307..632025	-	572	68249136	ureC	NTHI0665	-	urease subunit alpha
587	 41.18	0	632037..632342	-	101	68249137	ureB	NTHI0666	-	urease subunit beta
588	 43.89	+1	632419..632721	-	100	68249138	ureA	NTHI0667	-	urease subunit gamma
589	 40.21	0	632884..633174	+	96	68249139	groES	NTHI0668	-	co-chaperonin GroES
590	 41.51	0	633197..634834	+	545	68249140	groEL	NTHI0669	-	chaperonin GroEL
591	 42.89	+1	635008..635457	-	149	68249141	rplI	NTHI0670	-	50S ribosomal protein L9
592	 41.67	0	635474..635701	-	75	68249142	rpsR	NTHI0671	-	30S ribosomal protein S18
593	 35.47	0	635714..636040	-	108	68249143	priB	NTHI0672	-	primosomal replication protein N
594	 43.39	+1	636027..636404	-	125	68249144	rpsF	NTHI0673	-	30S ribosomal protein S6
595	 38.82	0	636596..636850	-	84	68249145	infA	NTHI0674	-	translation initiation factor IF-1
596	 40.97	0	638183..639046	+	287	68249146	ksgA	NTHI0676	-	dimethyladenosine transferase
597	 28.22	-2	639086..640024	-	312	68249147	lic2A	NTHI0677	-	UDP-Gal--lipooligosaccharide galactosyltransferase
598	 39.49	0	640077..640904	+	275	68249148	apaH	NTHI0679	-	diadenosine tetraphosphatase
599	 37.82	0	640914..641537	+	207	68249149	-	NTHI0680	-	hypothetical protein
600	 41.44	0	641663..643117	-	484	68249150	gnd	NTHI0681	-	6-phosphogluconate dehydrogenase
601	 30.57	-2	643233..643775	-	180	68249151	-	NTHI0683	-	hypothetical protein
602	 40.74	0	643858..644046	-	62	68249152	-	NTHI0684	-	hypothetical protein
603	 38.91	0	644116..644814	-	232	161761278	devB	NTHI0685	-	6-phosphogluconolactonase
604	 41.28	0	644957..646441	-	494	68249154	zwf	NTHI0686	-	glucose-6-phosphate 1-dehydrogenase
605	 38.89	0	646517..647326	-	269	68249155	cysQ	NTHI0687	-	CysQ
606	 38.13	0	647331..647747	-	138	68249156	-	NTHI0688	-	hypothetical protein
607	 40.54	0	647804..649786	-	660	68249157	-	NTHI0689	-	hypothetical protein
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.