IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
489	 35.21	0	526370..527167	-	265	68249039	comA	NTHI0566	-	competence protein A
490	 41.43	0	527266..529860	+	864	68249040	mrcA	NTHI0567	-	penicillin-binding protein 1A
491	 39.83	0	529933..530778	+	281	68249041	-	NTHI0568	-	hypothetical protein
492	 39.07	0	530911..531276	+	121	68249042	-	NTHI0569	-	hypothetical protein
493	 43.45	+1	531407..532009	+	200	68249043	recR	NTHI0570	-	recombination protein RecR
494	 40.39	0	532025..533980	+	651	68249044	topB	NTHI0571	-	DNA topoisomerase III
495	 39.47	0	534089..534430	+	113	68249045	secG	NTHI0572	-	preprotein translocase subunit SecG
496	 41.47	0	534975..536645	-	556	68249046	fruA	NTHI0573	-	PTS system, fructose-specific IIBC component
497	 40.45	0	536647..537588	-	313	68249047	fruK	NTHI0574	-	1-phosphofructokinase
498	 41.87	0	537590..539089	-	499	68249048	fruB	NTHI0575	-	bifunctional fructose-specific PTS IIA/HPr protein
499	 37.62	0	539161..539697	-	178	68249049	-	NTHI0576	-	hypothetical protein
500	 36.92	0	539784..540062	-	92	68249050	vapD	NTHI0577	-	virulence-associated protein D
501	 40.10	0	540071..540262	-	63	68249051	vapX	NTHI0578	-	hypothetical protein
502	 37.26	0	540334..541632	-	432	68249052	-	NTHI0579	-	hypothetical protein
503	 37.33	0	541683..542207	-	174	68249053	-	NTHI0580	-	hypothetical protein
504	 41.38	0	542234..543016	-	260	68249054	-	NTHI0581	-	putative deoxyribonuclease
505	 40.65	0	543071..544054	-	327	68249055	holB	NTHI0582	-	DNA polymerase III subunit delta'
506	 24.81	-2	544051..544179	-	42	68249056	-	NTHI0584	-	hypothetical protein
507	 40.63	0	544254..546377	+	707	68249057	lav	NTHI0585	-	autotransported protein Lav
508	 41.67	0	547283..547942	-	219	68249058	tdk	NTHI0586	-	thymidylate kinase
509	 36.40	0	547932..548975	-	347	68249059	-	NTHI0587	-	periplasmic solute-binding protein
510	 36.73	0	549045..549986	-	313	68249060	surA	NTHI0588	-	survival protein SurA-like protein
511	 36.11	0	550056..550595	-	179	68249061	pyrR	NTHI0589	-	pyrimidine regulatory protein PyrR
512	 38.64	0	550727..551518	+	263	68249062	mazG	NTHI0591	-	nucleoside triphosphate pyrophosphohydrolase
513	 36.19	0	551568..552443	-	291	68249063	-	NTHI0592	-	hypothetical protein
514	 40.09	0	552636..555047	+	803	68249064	lon	NTHI0593	-	ATP-dependent protease La
515	 38.54	0	555164..556315	+	383	68249065	-	NTHI0594	-	coproporphyrinogen III oxidase
516	 39.70	0	556449..557108	+	219	68249066	rpiA	NTHI0595	-	ribose-5-phosphate isomerase A
517	 40.55	0	557138..558370	+	410	68249067	serA	NTHI0596	-	D-3-phosphoglycerate dehydrogenase
518	 38.08	0	558413..559255	-	280	68249068	-	NTHI0597	-	aminomethyltransferase related to GcvT
519	 39.58	0	559265..560128	-	287	68249069	-	NTHI0598	-	hypothetical protein
520	 39.69	0	560577..561488	+	303	68249070	hisG	NTHI0599	-	ATP phosphoribosyltransferase
521	 42.52	+1	561581..562864	+	427	68249071	hisD	NTHI0600	-	histidinol dehydrogenase
522	 40.85	0	562933..564036	+	367	68249072	hisC	NTHI0601	-	histidinol-phosphate aminotransferase
523	 40.40	0	564148..565236	+	362	68249073	hisB	NTHI0602	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
524	 38.33	0	565302..565901	+	199	68249074	hisH	NTHI0603	-	imidazole glycerol phosphate synthase subunit HisH
525	 40.67	0	565937..566686	+	249	68249075	hisA	NTHI0604	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
526	 42.47	+1	566668..567444	+	258	68249076	hisF	NTHI0605	-	imidazole glycerol phosphate synthase subunit HisF
527	 37.09	0	567444..568109	+	221	68249077	hisI	NTHI0606	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
528	 20.92	-2	568191..568343	+	50	68249078	-	NTHI0606_1	-	hypothetical protein
529	 39.40	0	568373..569575	+	400	68249079	tyrP	NTHI0607	-	tyrosine-specific transport protein 1
530	 36.60	0	569761..570189	-	142	68249080	atpC	NTHI0608	-	F0F1 ATP synthase subunit epsilon
531	 39.96	0	570219..571592	-	457	68249081	atpD	NTHI0609	-	F0F1 ATP synthase subunit beta
532	 37.47	0	571609..572478	-	289	68249082	atpG	NTHI0610	-	F0F1 ATP synthase subunit gamma
533	 39.88	0	572494..574035	-	513	68249083	atpA	NTHI0611	-	F0F1 ATP synthase subunit alpha
534	 39.51	0	574048..574581	-	177	68249084	atpH	NTHI0612	-	F0F1 ATP synthase subunit delta
535	 37.58	0	574594..575064	-	156	68249085	atpF	NTHI0613	-	F0F1 ATP synthase subunit B
536	 36.47	0	575114..575368	-	84	68249086	atpE	NTHI0614	-	F0F1 ATP synthase subunit C
537	 35.74	0	575424..576212	-	262	68249087	atpB	NTHI0615	-	F0F1 ATP synthase subunit A
538	 28.80	-2	576249..576623	-	124	68249088	-	NTHI0616	-	F0F1 ATP synthase subunit I
539	 32.35	-1	576749..577360	-	203	68249089	gidB	NTHI0617	-	glucose-inhibited division protein B
540	 37.30	0	577500..577877	-	125	68249090	-	NTHI0618	-	hypothetical protein
541	 40.30	0	577993..578595	+	200	68249091	-	NTHI0619	-	putative phosphatase/phosphohexomutase
542	 35.86	0	578595..579068	+	157	68249092	-	NTHI0620	-	hypothetical protein
543	 36.31	0	579253..579756	+	167	68249093	luxS	NTHI0621	-	S-ribosylhomocysteinase
544	 38.42	0	580700..581407	-	235	68249094	aphA	NTHI0623	-	acid phosphatase/phosphotransferase
545	 41.67	0	581627..582154	+	175	68249095	hslV	NTHI0624	-	ATP-dependent protease peptidase subunit
546	 41.80	0	582165..583499	+	444	68249096	hslU	NTHI0625	-	ATP-dependent protease ATP-binding subunit
547	 36.75	0	583569..584621	-	350	68249097	potD2	NTHI0626	-	spermidine/putrescine-binding periplasmic protein 2 precursor
548	 38.73	0	584761..586056	+	431	68249098	ordL	NTHI0627	-	oxidoreductase OrdL
549	 38.18	0	586220..587662	+	480	68249099	rmuC	NTHI0628	-	DNA recombination protein RmuC
550	 36.67	0	587826..588245	+	139	68249100	rbsD	NTHI0629	-	D-ribose pyranase
551	 39.81	0	588259..589740	+	493	68249101	rbsA	NTHI0630	-	D-ribose transporter ATP binding protein
552	 37.35	0	589753..590724	+	323	68249102	rbsC	NTHI0631	-	ribose ABC transporter permease protein
553	 39.93	0	590744..591622	+	292	68249103	rbsB	NTHI0632	-	D-ribose transporter subunit RbsB
554	 43.21	+1	591720..592640	+	306	68249104	rbsK	NTHI0633	-	ribokinase
555	 41.04	0	592668..593666	+	332	68249105	rbsR	NTHI0634	-	ribose operon repressor
556	 36.41	0	593772..594323	+	183	68249106	-	NTHI0635	-	hypothetical protein
557	 41.10	0	594463..594951	-	162	68249107	menG	NTHI0636	-	ribonuclease activity regulator protein RraA
558	 39.23	0	595003..595935	-	310	68249108	menA	NTHI0637	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
559	 42.36	+1	595982..596701	+	239	68249109	-	NTHI0638	-	hypothetical protein
560	 35.66	0	596754..597740	-	328	68249110	tehA	NTHI0639	-	potassium-tellurite ethidium and proflavin transporter
561	 41.40	0	597892..602142	-	1416	68249111	rpoC	NTHI0640	-	DNA-directed RNA polymerase subunit beta'
562	 39.68	0	602349..606380	-	1343	68249112	rpoB	NTHI0641	-	DNA-directed RNA polymerase subunit beta
563	 38.99	0	606764..607453	-	229	68249113	rplA	NTHI0642	-	50S ribosomal protein L1
564	 41.03	0	607458..607886	-	142	68249114	rplK	NTHI0643	-	50S ribosomal protein L11
565	 39.05	0	608059..608775	-	238	68249115	deoD	NTHI0644	-	purine nucleoside phosphorylase
566	 41.23	0	608859..610112	-	417	68249116	-	NTHI0645	-	nucleoside permease
567	 38.91	0	610211..610999	-	262	68249117	-	NTHI0646	-	pyruvate-formate lyase-activating enzyme
568	 41.17	0	611008..612552	-	514	68249118	-	NTHI0647	-	hypothetical protein
569	 39.73	0	612765..613421	+	218	68249119	-	NTHI0648	-	hypothetical protein
570	 38.19	0	613377..614447	-	356	68249120	waaQ	NTHI0649	-	ADP-heptose--lipooligosaccharide heptosyltransferase III
571	 40.65	0	614485..615564	-	359	68249121	fba	NTHI0650	-	fructose-bisphosphate aldolase
572	 40.22	0	615675..616835	-	386	68249122	pgk	NTHI0651	-	phosphoglycerate kinase
573	 37.61	0	616931..617725	-	264	68249123	-	NTHI0652	-	ribonuclease I
574	 42.91	+1	617803..618063	+	86	68249124	-	NTHI0653	-	putative ferredoxin-like protein
575	 40.46	0	618197..619417	-	406	68249125	tyrQ	NTHI0654	-	tyrosine-specific transport protein 2
576	 38.49	0	619454..620035	-	193	68249126	tdk	NTHI0655	-	thymidine kinase
577	 42.08	+1	620044..621072	-	342	68249127	gcp	NTHI0656	-	O-sialoglycoprotein endopeptidase
578	 42.59	+1	621304..621519	+	71	68249128	rpsU	NTHI0657	-	30S ribosomal protein S21
579	 39.56	0	621653..623434	+	593	68249129	dnaG	NTHI0658	-	DNA primase
580	 37.93	0	623505..625376	+	623	68249130	rpoD	NTHI0659	-	RNA polymerase sigma factor RpoD
581	 37.75	0	625686..627113	-	475	68249131	aspA	NTHI0660	-	aspartate ammonia-lyase
582	 43.75	+1	627260..628075	-	271	68249132	ureH	NTHI0661	-	urease accessory protein UreH
583	 43.81	+1	628150..628827	-	225	68249133	ureG	NTHI0662	-	urease accessory protein
584	 47.60	+2	628930..629637	-	235	68249134	ureF	NTHI0663	-	urease accessory protein UreF
585	 42.83	+1	629622..630179	-	185	68249135	ureE	NTHI0664	-	urease accessory protein UreE
586	 44.21	+1	630307..632025	-	572	68249136	ureC	NTHI0665	-	urease subunit alpha
587	 41.18	0	632037..632342	-	101	68249137	ureB	NTHI0666	-	urease subunit beta
588	 43.89	+1	632419..632721	-	100	68249138	ureA	NTHI0667	-	urease subunit gamma
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.