IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
347	 40.46	0	391802..393064	+	420	68248897	rho	NTHI0405	-	transcription termination factor Rho
348	 33.48	-1	393118..393810	-	230	68248898	pilD	NTHI0406	-	putative type 4 prepilin-like protein specific leader peptidase
349	 35.87	0	393807..395027	-	406	68248899	pilC	NTHI0407	-	putative type IV pilin secretion protein
350	 39.21	0	395024..396418	-	464	68248900	pilB	NTHI0408	-	putative type IV pilin secretion protein
351	 37.56	0	396415..396864	-	149	68248901	pilA	NTHI0409	-	Type IV pilin subunit protein
352	 36.90	0	396979..397539	+	186	68248902	ampD	NTHI0411	-	N-acetyl-anhydromuranmyl-L-alanine amidase
353	 37.11	0	398161..399060	+	299	68248903	corC	NTHI0412	-	magnesium and cobalt efflux protein CorC
354	 36.07	0	399044..400612	+	522	68248904	lnt	NTHI0413	-	apolipoprotein N-acyltransferase
355	 39.43	0	400662..401399	+	245	68248905	-	NTHI0414	-	hypothetical protein
356	 38.86	0	401396..401956	+	186	68248906	-	NTHI0415	-	hypothetical protein
357	 40.24	0	401956..402375	+	139	68248907	ruvX	NTHI0416	-	Holliday junction resolvase-like protein
358	 34.41	-1	403545..404756	+	403	68248908	-	NTHI0419	-	prophage CP4-57-like integrase
359	 32.64	-1	404793..405227	-	144	68248909	-	NTHI0420	-	hypothetical protein
360	 30.97	-2	405340..405762	+	140	68248910	-	NTHI0421	-	hypothetical protein
361	 31.40	-1	405771..406544	+	257	68248911	-	NTHI0422	-	hypothetical protein
362	 26.56	-2	407079..407270	+	63	68248912	-	NTHI0423	-	hypothetical protein
363	 32.68	-1	407319..407471	+	50	68248913	-	NTHI0424	-	hypothetical protein
364	 30.30	-2	407638..408528	-	296	68248914	-	NTHI0425	-	hypothetical protein
365	 41.42	0	409189..410004	+	271	68248915	proC	NTHI0426	-	pyrroline-5-carboxylate reductase
366	 40.27	0	410004..411170	+	388	68248916	hcaT	NTHI0427	-	putative 3-phenylpropionic acid transporter
367	 41.50	0	411201..412094	+	297	68248917	xerD	NTHI0428	-	site-specific tyrosine recombinase XerD
368	 30.56	-2	412267..412554	+	95	68248918	-	NTHI0429	-	hypothetical protein
369	 42.16	+1	412606..413613	-	335	68248919	ruvB	NTHI0430	-	Holliday junction DNA helicase B
370	 37.89	0	413621..414235	-	204	68248920	ruvA	NTHI0431	-	Holliday junction DNA helicase motor protein
371	 41.88	0	414298..414870	-	190	68248921	ruvC	NTHI0432	-	Holliday junction resolvase
372	 41.57	0	414917..415657	-	246	68248922	-	NTHI0433	-	hypothetical protein
373	 36.29	0	415669..416142	-	157	68248923	ntpA	NTHI0434	-	dATP pyrophosphohydrolase
374	 41.88	0	416164..417930	-	588	68248924	aspS	NTHI0435	-	aspartyl-tRNA synthetase
375	 33.53	-1	418149..418667	+	172	68248925	-	NTHI0436	-	hypothetical protein
376	 40.08	0	418720..419445	+	241	68248926	-	NTHI0438	-	hypothetical protein
377	 40.51	0	419538..419774	+	78	68248927	-	NTHI0439	-	hypothetical protein
378	 33.58	-1	419771..420175	+	134	68248928	-	NTHI0440	-	nucleic acid-binding protein
379	 39.95	0	420242..420649	+	135	68248929	gloA	NTHI0441	-	lactoylglutathione lyase
380	 40.43	0	420723..421412	+	229	68248930	rnt	NTHI0442	-	ribonuclease T
381	 37.32	0	421726..423078	+	450	68248931	-	NTHI0443	-	hypothetical protein
382	 32.99	-1	423111..423698	+	195	68248932	-	NTHI0444	-	primosomal replication protein N
383	 41.98	+1	424049..424615	-	188	68248933	efp	NTHI0446	-	elongation factor P
384	 38.45	0	424653..425669	+	338	68248934	-	NTHI0447	-	lysine 2,3-aminomutase
385	 39.04	0	425768..427063	+	431	68248935	oapA	NTHI0448	-	opacity associated protein
386	 37.04	0	427122..427526	+	134	68248936	oapB	NTHI0449	-	opacity associated protein OapB
387	 41.49	0	427529..428239	+	236	68248937	recO	NTHI0450	-	DNA repair protein RecO
388	 38.34	0	428239..429555	+	438	68248938	rumA	NTHI0451	-	23S rRNA 5-methyluridine methyltransferase
389	 40.50	0	429633..431864	+	743	68248939	relA	NTHI0452	-	GTP pyrophosphokinase
390	 37.82	0	431879..432235	+	118	68248940	dgkA	NTHI0453	-	diacylglycerol kinase
391	 42.76	+1	432318..432911	+	197	68248941	mogA	NTHI0454	-	molybdenum cofactor biosynthesis protein
392	 41.59	0	432913..433251	+	112	68248942	glnB	NTHI0456	-	nitrogen regulatory protein P-II
393	 40.78	0	433251..434297	+	348	68248943	-	NTHI0457	-	hypothetical protein
394	 41.27	0	434339..436531	-	730	68248944	priA	NTHI0458	-	primosome assembly protein PriA
395	 38.60	0	436616..437356	+	246	68248945	trmB	NTHI0459	-	tRNA (guanine-N(7))-methyltransferase
396	 36.23	0	437441..437785	+	114	68248946	-	NTHI0460	-	hypothetical protein
397	 39.36	0	437991..438521	+	176	68248947	napF	NTHI0461	-	ferredoxin-type protein NapF
398	 34.75	-1	438514..438795	+	93	68248948	napD	NTHI0462	-	NapD
399	 41.50	0	438817..441315	+	832	68248949	napA	NTHI0463	-	nitrate reductase
400	 42.38	+1	441369..442208	+	279	68248950	napG	NTHI0464	-	quinol dehydrogenase periplasmic component
401	 41.78	0	442208..443071	+	287	68248951	napH	NTHI0465	-	quinol dehydrogenase membrane component
402	 40.62	0	443068..443520	+	150	68248952	napB	NTHI0466	-	diheme cytochrome C NapB
403	 39.14	0	443535..444137	+	200	68248953	napC	NTHI0467	-	cytochrome C-type protein NapC
404	 39.53	0	444297..444941	-	214	68248954	adk	NTHI0468	-	adenylate kinase
405	 38.73	0	445026..446303	-	425	68248955	lic3C	NTHI0469	-	putative integral membrane signal transducer protein
406	 38.74	0	446445..447461	-	338	68248956	galE	NTHI0471	-	UDP-glucose 4-epimerase
407	 27.10	-2	447634..448596	-	320	68248957	lic3A	NTHI0472	-	CMP-Neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase
408	 46.89	+2	448995..449717	+	240	68248958	-	NTHI0473	-	putative ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
409	 46.07	+2	449714..450451	+	245	68248959	-	NTHI0474	-	putative ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
410	 40.74	0	450473..451417	+	314	68248960	-	NTHI0475	-	putative ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component
411	 41.98	+1	451427..452074	+	215	68248961	-	NTHI0476	-	putative transcription activator
412	 36.03	0	452169..452984	-	271	68248962	hfeD	NTHI0477	-	putative ABC-type chelated iron transport system, permease component
413	 36.16	0	452977..453825	-	282	68248963	hfeC	NTHI0478	-	putative ABC-type chelated iron transport system, permease component
414	 38.00	0	453829..454749	-	306	68248964	hfeB	NTHI0479	-	putative ABC-type chelated iron transport system, ATPase component
415	 37.64	0	454749..455630	-	293	68248965	hfeA	NTHI0481	-	putative periplasmic chelated iron binding protein
416	 39.57	0	455936..456400	+	154	68248966	-	NTHI0482	-	hypothetical protein
417	 33.67	-1	456492..457370	-	292	68248967	pbpG	NTHI0483	-	penicillin-binding protein 7 homolog precursor
418	 39.22	0	457595..458767	+	390	68248968	-	NTHI0485	-	hypothetical protein
419	 35.19	0	458867..459406	+	179	68248969	-	NTHI0486	-	hypothetical protein
420	 38.38	0	459478..460389	+	303	68248970	-	NTHI0487	-	hypothetical protein
421	 41.64	0	460398..461504	+	368	68248971	ispG	NTHI0488	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
422	 39.47	0	461514..462785	+	423	68248972	hisS	NTHI0489	-	histidyl-tRNA synthetase
423	 37.07	0	462803..463417	+	204	68248973	-	NTHI0490	-	hypothetical protein
424	 31.28	-1	463468..463662	-	64	68248974	-	NTHI0491	-	hypothetical protein
425	 39.47	0	463662..464003	-	113	68248975	fdx	NTHI0492	-	ferredoxin, 2Fe-2S
426	 40.75	0	464043..465902	-	619	68248976	hscA	NTHI0493	-	chaperone protein HscA
427	 34.93	0	465921..466607	-	228	68248977	-	NTHI0494	-	hypothetical protein
428	 34.86	0	466658..467182	-	174	68248978	hscB	NTHI0495	-	co-chaperone HscB
429	 35.49	0	467195..467518	-	107	68248979	-	NTHI0496	-	hypothetical protein
430	 36.75	0	467576..467956	-	126	68248980	nifU	NTHI0497	-	scaffold protein
431	 38.33	0	468016..469236	-	406	68248981	nifS2	NTHI0498	-	cysteine desulfurase
432	 35.98	0	469297..469749	-	150	68248982	-	NTHI0499	-	hypothetical protein
433	 34.57	-1	469802..470527	-	241	68248983	-	NTHI0500	-	tRNA/rRNA methyltransferase
434	 39.83	0	470967..471428	-	153	68248984	pal	NTHI0501	-	outer membrane protein P6 precursor
435	 42.29	+1	471452..472735	-	427	68248985	tolB	NTHI0502	-	translocation protein TolB
436	 42.87	+1	472777..474003	-	408	68248986	tolA	NTHI0503	-	cell envelope integrity inner membrane protein TolA
437	 35.95	0	474019..474438	-	139	68248987	tolR	NTHI0504	-	colicin uptake protein TolR
438	 39.01	0	474509..475195	-	228	68248988	tolQ	NTHI0505	-	hypothetical protein
439	 39.66	0	475212..475622	-	136	68248989	-	NTHI0506	-	thioesterase
440	 36.97	0	475947..477869	+	640	68248990	dinG	NTHI0507	-	ATP-dependent helicase
441	 38.26	0	477882..478592	+	236	68248991	-	NTHI0508	-	hypothetical protein
442	 36.41	0	478617..479168	+	183	68248992	-	NTHI0509	-	starvation-inducible outer membrane lipoprotein
443	 38.96	0	479210..480898	+	562	68248993	lcfA	NTHI0510	-	long-chain-fatty-acid--CoA ligase
444	 36.83	0	480954..482096	+	380	68248994	rnd	NTHI0511	-	ribonuclease D
445	 29.48	-2	482139..484007	-	622	68248995	-	NTHI0512	-	acyltransferase
446	 40.84	0	484081..485172	-	363	68248996	-	NTHI0513	-	translation-associated GTPase
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.