IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
306	 41.10	0	342506..345337	-	943	68248856	uvrA	NTHI0355	-	excinuclease ABC subunit A
307	 43.39	+1	345490..345996	+	168	68248857	ssb	NTHI0356	-	single-strand DNA-binding protein
308	 39.37	0	346174..346968	-	264	68248858	tonB	NTHI0358	-	TonB
309	 34.68	-1	346978..347421	-	147	68248859	exbD	NTHI0359	-	biopolymer transport protein
310	 33.77	-1	347425..347877	-	150	68248860	exbB	NTHI0360	-	transport protein ExbB
311	 34.40	-1	348046..348513	-	155	68248861	bcp	NTHI0361	-	thioredoxin-dependent thiol peroxidase
312	 38.24	0	348614..349510	+	298	68248862	dapA	NTHI0362	-	dihydrodipicolinate synthase
313	 33.65	-1	349621..350250	+	209	68248863	-	NTHI0363	-	lipoprotein
314	 36.11	0	350440..350763	+	107	68248864	-	NTHI0364	-	hypothetical protein
315	 24.07	-2	351477..352415	-	312	68248865	lgtC	NTHI0365	-	UDP-galactose--lipooligosaccharide galactosyltransferase
316	 39.12	0	352483..353070	-	195	68248866	orfM	NTHI0366	-	putative deoxyribonucleotide triphosphate pyrophosphatase
317	 38.15	0	353082..353807	-	241	68248867	kdkA	NTHI0367	-	3-deoxy-D-manno-octulosonic-acid kinase
318	 37.74	0	353884..354927	+	347	68248868	opsX	NTHI0368	-	ADP-heptose--lipooligosaccharide heptosyltransferase I
319	 38.45	0	355249..357378	+	709	68248869	hxuC	NTHI0369	-	heme-hemopexin utilization protein C
320	 36.98	0	357454..359151	+	565	68248870	hxuB	NTHI0370	-	heme/hemopexin-binding protein B
321	 35.18	0	359163..361928	+	921	68248871	hxuA	NTHI0371	-	heme/hemopexin-binding protein A
322	 36.97	0	362024..362380	-	118	68248872	folB	NTHI0372	-	dihydroneopterin aldolase
323	 39.83	0	362463..363062	+	199	68248873	-	NTHI0373	-	putative glycerol-3-phosphate acyltransferase PlsY
324	 37.56	0	363104..364807	+	567	68248874	narQ	NTHI0374	-	nitrate/nitrite sensor protein NarQ
325	 37.43	0	364817..365842	+	341	68248875	murB	NTHI0375	-	UDP-N-acetylenolpyruvoylglucosamine reductase
326	 40.07	0	365968..366813	+	281	68248876	rpoH	NTHI0376	-	RNA polymerase factor sigma-32
327	 39.56	0	367280..368146	-	288	68248877	djlA	NTHI0379	-	DNA-J like membrane chaperone protein
328	 41.59	0	368225..368866	-	213	68248878	pyrE	NTHI0380	-	orotate phosphoribosyltransferase
329	 43.24	+1	368890..369606	-	238	68248879	rph	NTHI0381	-	ribonuclease PH
330	 40.89	0	369907..371349	-	480	68248880	gltX	NTHI0382	-	glutamyl-tRNA synthetase
331	 36.17	0	372099..373754	+	551	68248881	lpt6	NTHI0383	-	PE-tn-6--lipooligosaccharide phosphorylethanolamine transferase
332	 33.83	-1	373772..374581	-	269	68248882	rbn	NTHI0384	-	ribonuclease BN
333	 37.65	0	374578..375063	-	161	68248883	-	NTHI0386	-	hypothetical protein
334	 35.90	0	375066..375728	-	220	68248884	-	NTHI0387	-	hypothetical protein
335	 41.37	0	375964..376722	+	252	161761279	udp	NTHI0389	-	uridine phosphorylase
336	 39.10	0	376948..378264	-	438	68248886	-	NTHI0390	-	metabolite transport protein
337	 35.89	0	378320..379063	-	247	68248887	-	NTHI0391	-	acyl-CoA thioester hydrolase YfbB
338	 41.30	0	379124..380830	-	568	68248888	menD	NTHI0392	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
339	 39.62	0	380846..382117	-	423	68248889	menF	NTHI0393	-	menaquinone-specific isochorismate synthase
340	 41.07	0	382274..383488	+	404	68248890	aspC3	NTHI0395	-	aminotransferase AlaT
341	 39.62	0	383605..384861	+	418	68248891	mtr	NTHI0396	-	tryptophan-specific transport protein
342	 41.81	0	384970..386337	-	455	68248892	sdaA	NTHI0397	-	L-serine dehydratase
343	 36.97	0	386372..387610	-	412	68248893	sdaC	NTHI0398	-	serine transporter
344	 41.08	0	387833..390001	-	722	68248894	-	NTHI0399	-	putative cation-transporting ATPase
345	 36.95	0	390841..391227	+	128	68248895	-	NTHI0403	-	heavy metal dependent transcriptional regulator
346	 41.51	0	391241..391558	-	105	68248896	metJ	NTHI0404	-	transcriptional repressor protein MetJ
347	 40.46	0	391802..393064	+	420	68248897	rho	NTHI0405	-	transcription termination factor Rho
348	 33.48	-1	393118..393810	-	230	68248898	pilD	NTHI0406	-	putative type 4 prepilin-like protein specific leader peptidase
349	 35.87	0	393807..395027	-	406	68248899	pilC	NTHI0407	-	putative type IV pilin secretion protein
350	 39.21	0	395024..396418	-	464	68248900	pilB	NTHI0408	-	putative type IV pilin secretion protein
351	 37.56	0	396415..396864	-	149	68248901	pilA	NTHI0409	-	Type IV pilin subunit protein
352	 36.90	0	396979..397539	+	186	68248902	ampD	NTHI0411	-	N-acetyl-anhydromuranmyl-L-alanine amidase
353	 37.11	0	398161..399060	+	299	68248903	corC	NTHI0412	-	magnesium and cobalt efflux protein CorC
354	 36.07	0	399044..400612	+	522	68248904	lnt	NTHI0413	-	apolipoprotein N-acyltransferase
355	 39.43	0	400662..401399	+	245	68248905	-	NTHI0414	-	hypothetical protein
356	 38.86	0	401396..401956	+	186	68248906	-	NTHI0415	-	hypothetical protein
357	 40.24	0	401956..402375	+	139	68248907	ruvX	NTHI0416	-	Holliday junction resolvase-like protein
358	 34.41	-1	403545..404756	+	403	68248908	-	NTHI0419	-	prophage CP4-57-like integrase
359	 32.64	-1	404793..405227	-	144	68248909	-	NTHI0420	-	hypothetical protein
360	 30.97	-2	405340..405762	+	140	68248910	-	NTHI0421	-	hypothetical protein
361	 31.40	-1	405771..406544	+	257	68248911	-	NTHI0422	-	hypothetical protein
362	 26.56	-2	407079..407270	+	63	68248912	-	NTHI0423	-	hypothetical protein
363	 32.68	-1	407319..407471	+	50	68248913	-	NTHI0424	-	hypothetical protein
364	 30.30	-2	407638..408528	-	296	68248914	-	NTHI0425	-	hypothetical protein
365	 41.42	0	409189..410004	+	271	68248915	proC	NTHI0426	-	pyrroline-5-carboxylate reductase
366	 40.27	0	410004..411170	+	388	68248916	hcaT	NTHI0427	-	putative 3-phenylpropionic acid transporter
367	 41.50	0	411201..412094	+	297	68248917	xerD	NTHI0428	-	site-specific tyrosine recombinase XerD
368	 30.56	-2	412267..412554	+	95	68248918	-	NTHI0429	-	hypothetical protein
369	 42.16	+1	412606..413613	-	335	68248919	ruvB	NTHI0430	-	Holliday junction DNA helicase B
370	 37.89	0	413621..414235	-	204	68248920	ruvA	NTHI0431	-	Holliday junction DNA helicase motor protein
371	 41.88	0	414298..414870	-	190	68248921	ruvC	NTHI0432	-	Holliday junction resolvase
372	 41.57	0	414917..415657	-	246	68248922	-	NTHI0433	-	hypothetical protein
373	 36.29	0	415669..416142	-	157	68248923	ntpA	NTHI0434	-	dATP pyrophosphohydrolase
374	 41.88	0	416164..417930	-	588	68248924	aspS	NTHI0435	-	aspartyl-tRNA synthetase
375	 33.53	-1	418149..418667	+	172	68248925	-	NTHI0436	-	hypothetical protein
376	 40.08	0	418720..419445	+	241	68248926	-	NTHI0438	-	hypothetical protein
377	 40.51	0	419538..419774	+	78	68248927	-	NTHI0439	-	hypothetical protein
378	 33.58	-1	419771..420175	+	134	68248928	-	NTHI0440	-	nucleic acid-binding protein
379	 39.95	0	420242..420649	+	135	68248929	gloA	NTHI0441	-	lactoylglutathione lyase
380	 40.43	0	420723..421412	+	229	68248930	rnt	NTHI0442	-	ribonuclease T
381	 37.32	0	421726..423078	+	450	68248931	-	NTHI0443	-	hypothetical protein
382	 32.99	-1	423111..423698	+	195	68248932	-	NTHI0444	-	primosomal replication protein N
383	 41.98	+1	424049..424615	-	188	68248933	efp	NTHI0446	-	elongation factor P
384	 38.45	0	424653..425669	+	338	68248934	-	NTHI0447	-	lysine 2,3-aminomutase
385	 39.04	0	425768..427063	+	431	68248935	oapA	NTHI0448	-	opacity associated protein
386	 37.04	0	427122..427526	+	134	68248936	oapB	NTHI0449	-	opacity associated protein OapB
387	 41.49	0	427529..428239	+	236	68248937	recO	NTHI0450	-	DNA repair protein RecO
388	 38.34	0	428239..429555	+	438	68248938	rumA	NTHI0451	-	23S rRNA 5-methyluridine methyltransferase
389	 40.50	0	429633..431864	+	743	68248939	relA	NTHI0452	-	GTP pyrophosphokinase
390	 37.82	0	431879..432235	+	118	68248940	dgkA	NTHI0453	-	diacylglycerol kinase
391	 42.76	+1	432318..432911	+	197	68248941	mogA	NTHI0454	-	molybdenum cofactor biosynthesis protein
392	 41.59	0	432913..433251	+	112	68248942	glnB	NTHI0456	-	nitrogen regulatory protein P-II
393	 40.78	0	433251..434297	+	348	68248943	-	NTHI0457	-	hypothetical protein
394	 41.27	0	434339..436531	-	730	68248944	priA	NTHI0458	-	primosome assembly protein PriA
395	 38.60	0	436616..437356	+	246	68248945	trmB	NTHI0459	-	tRNA (guanine-N(7))-methyltransferase
396	 36.23	0	437441..437785	+	114	68248946	-	NTHI0460	-	hypothetical protein
397	 39.36	0	437991..438521	+	176	68248947	napF	NTHI0461	-	ferredoxin-type protein NapF
398	 34.75	-1	438514..438795	+	93	68248948	napD	NTHI0462	-	NapD
399	 41.50	0	438817..441315	+	832	68248949	napA	NTHI0463	-	nitrate reductase
400	 42.38	+1	441369..442208	+	279	68248950	napG	NTHI0464	-	quinol dehydrogenase periplasmic component
401	 41.78	0	442208..443071	+	287	68248951	napH	NTHI0465	-	quinol dehydrogenase membrane component
402	 40.62	0	443068..443520	+	150	68248952	napB	NTHI0466	-	diheme cytochrome C NapB
403	 39.14	0	443535..444137	+	200	68248953	napC	NTHI0467	-	cytochrome C-type protein NapC
404	 39.53	0	444297..444941	-	214	68248954	adk	NTHI0468	-	adenylate kinase
405	 38.73	0	445026..446303	-	425	68248955	lic3C	NTHI0469	-	putative integral membrane signal transducer protein
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.