IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
246	 38.29	0	267243..267767	-	174	68248796	fldA	NTHI0285	-	flavodoxin FldA
247	 32.41	-1	267864..268727	-	287	68248797	-	NTHI0286	-	esterase/lipase
248	 36.14	0	268717..269322	+	201	68248798	seqA	NTHI0289	-	replication initiation regulator SeqA
249	 35.98	0	269325..270683	+	452	68248799	menE	NTHI0290	-	O-succinylbenzoic acid--CoA ligase
250	 34.02	-1	270711..274049	+	1112	68248800	-	NTHI0291	-	potassium efflux protein KefA
251	 42.36	+1	274059..275132	+	357	68248801	aroC	NTHI0292	-	chorismate synthase
252	 43.21	+1	275305..276165	+	286	68248802	mepA	NTHI0294	-	penicillin-insensitive murein endopeptidase
253	 38.93	0	276183..276950	+	255	68248803	-	NTHI0295	-	hypothetical protein
254	 38.98	0	276997..277953	+	318	68248804	msbB	NTHI0296	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
255	 40.02	0	278080..279051	+	323	68248805	selD	NTHI0297	-	selenide, water dikinase
256	 41.31	0	279160..279510	-	116	68248806	rplS	NTHI0298	-	50S ribosomal protein L19
257	 44.40	+1	279547..280287	-	246	68248807	trmD	NTHI0299	-	tRNA (guanine-N(1)-)-methyltransferase
258	 36.36	0	280325..280852	-	175	68248808	rimM	NTHI0300	-	16S rRNA-processing protein
259	 44.18	+1	280897..281145	-	82	68248809	rpsP	NTHI0301	-	30S ribosomal protein S16
260	 31.30	-1	281425..282210	+	261	68248810	-	NTHI0302	-	hypothetical protein
261	 36.70	0	282233..284044	+	603	68248811	nadN	NTHI0303	-	NAD nucleotidase
262	 37.94	0	284329..284871	+	180	68248812	aroK	NTHI0305	-	shikimate kinase
263	 42.70	+1	284891..285979	+	362	68248813	aroB	NTHI0306	-	3-dehydroquinate synthase
264	 34.84	0	285981..286841	+	286	68248814	dam	NTHI0307	-	DNA adenine methylase
265	 25.00	-2	287806..287913	+	35	68248815	-	NTHI0307_1	-	hypothetical protein
266	 38.43	0	287932..288657	-	241	68248816	pgpB	NTHI0308	-	phosphatidylglycerophosphatase B
267	 38.37	0	288703..289377	+	224	68248817	ribA	NTHI0309	-	GTP cyclohydrolase II
268	 36.12	0	289693..291237	-	514	68248818	-	NTHI0310	-	putative ABC-type oligopeptide transport system, periplasmic component
269	 29.48	-2	291230..291592	-	120	68248819	-	NTHI0311	-	hypothetical protein
270	 40.66	0	291711..293756	+	681	68248820	prlC	NTHI0312	-	oligopeptidase A
271	 39.81	0	293988..295532	+	514	68248821	hsdM2	NTHI0314	-	putative type I restriction-modification system methyltransferase subunit
272	 35.04	0	295617..296789	+	390	68248822	hsdS2	NTHI0315	-	putative type I restriction-modification system specificity protein
273	 28.74	-2	296791..297945	+	384	68248823	prrC	NTHI0316	-	putative anticodon nuclease
274	 35.44	0	297948..298946	+	332	68248824	-	NTHI0317	-	DNA binding protein
275	 36.58	0	298957..302040	+	1027	68248825	hsdR2	NTHI0318	-	putative type I restriction-modification system
276	 37.94	0	302187..302816	-	209	68248826	-	NTHI0319	-	hypothetical protein
277	 34.09	-1	303030..304871	-	613	68248827	arcB	NTHI0321	-	aerobic respiration control sensor protein ArcB
278	 34.11	-1	304940..305584	-	214	68248828	-	NTHI0322	-	uracil-DNA glycosylase
279	 35.53	0	311636..312544	-	302	68248829	birA	NTHI0323	-	biotin--protein ligase
280	 42.60	+1	312671..314137	+	488	68248830	guaB	NTHI0324	-	inositol-5-monophosphate dehydrogenase
281	 43.51	+1	314247..315818	+	523	68248831	guaA	NTHI0326	-	bifunctional GMP synthase/glutamine amidotransferase protein
282	 36.88	0	315880..316782	-	300	68248832	-	NTHI0327	-	hypothetical protein
283	 35.90	0	316845..317351	+	168	68248833	-	NTHI0328	-	putative transcriptional regulator
284	 36.33	0	317390..318592	-	400	68248834	nhaA	NTHI0329	-	Na(+)/H(+) antiporter 1
285	 37.30	0	318780..320090	+	436	68248835	brnQ	NTHI0331	-	branched chain amino acid ABC transporter carrier protein
286	 33.55	-1	320198..320665	-	155	68248836	-	NTHI0332	-	hypothetical protein
287	 29.98	-2	320692..321138	-	148	68248837	-	NTHI0333	-	hypothetical protein
288	 42.44	+1	321411..323540	+	709	68248838	pnp	NTHI0334	-	polynucleotide phosphorylase/polyadenylase
289	 38.41	0	323622..324566	+	314	68248839	nlpL	NTHI0335	-	lipoprotein NlpI
290	 41.86	0	324686..326527	+	613	68248840	deaD	NTHI0337	-	cold-shock DEAD-box protein A-like protein
291	 34.70	-1	326705..328093	+	462	68248841	-	NTHI0338	-	putative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein
292	 28.10	-2	328098..328250	+	50	68248842	-	NTHI0339	-	hypothetical protein
293	 34.34	-1	328384..328680	-	98	68248843	-	NTHI0340	-	hypothetical protein
294	 37.62	0	328737..328946	-	69	68248844	-	NTHI0342	-	hypothetical protein
295	 33.90	-1	329014..329364	-	116	68248845	arsC	NTHI0343	-	putative arsenate reductase
296	 33.14	-1	329443..330492	+	349	68248846	perM	NTHI0344	-	putative permease PerM-like protein
297	 37.32	0	330606..331583	-	325	68248847	secF	NTHI0345	-	preprotein translocase subunit SecF
298	 38.57	0	331591..333441	-	616	68248848	secD	NTHI0346	-	preprotein translocase subunit SecD
299	 35.37	0	333511..333804	-	97	68248849	yajC	NTHI0347	-	preprotein translocase subunit YajC
300	 31.98	-1	333912..334133	-	73	68248850	-	NTHI0348	-	redox protein, regulator of disulfide bond formation
301	 36.61	0	334130..334648	-	172	68248851	-	NTHI0349	-	hypothetical protein
302	 41.69	0	334713..335861	-	382	68248852	tgt	NTHI0350	-	queuine tRNA-ribosyltransferase
303	 36.26	0	336206..337297	-	363	68248853	queA	NTHI0351	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
304	 33.78	-1	337421..337867	-	148	68248854	-	NTHI0353	-	hypothetical protein
305	 39.27	0	338010..342188	-	1392	68248855	hap	NTHI0354	-	adhesion and penetration protein Hap
306	 41.10	0	342506..345337	-	943	68248856	uvrA	NTHI0355	-	excinuclease ABC subunit A
307	 43.39	+1	345490..345996	+	168	68248857	ssb	NTHI0356	-	single-strand DNA-binding protein
308	 39.37	0	346174..346968	-	264	68248858	tonB	NTHI0358	-	TonB
309	 34.68	-1	346978..347421	-	147	68248859	exbD	NTHI0359	-	biopolymer transport protein
310	 33.77	-1	347425..347877	-	150	68248860	exbB	NTHI0360	-	transport protein ExbB
311	 34.40	-1	348046..348513	-	155	68248861	bcp	NTHI0361	-	thioredoxin-dependent thiol peroxidase
312	 38.24	0	348614..349510	+	298	68248862	dapA	NTHI0362	-	dihydrodipicolinate synthase
313	 33.65	-1	349621..350250	+	209	68248863	-	NTHI0363	-	lipoprotein
314	 36.11	0	350440..350763	+	107	68248864	-	NTHI0364	-	hypothetical protein
315	 24.07	-2	351477..352415	-	312	68248865	lgtC	NTHI0365	-	UDP-galactose--lipooligosaccharide galactosyltransferase
316	 39.12	0	352483..353070	-	195	68248866	orfM	NTHI0366	-	putative deoxyribonucleotide triphosphate pyrophosphatase
317	 38.15	0	353082..353807	-	241	68248867	kdkA	NTHI0367	-	3-deoxy-D-manno-octulosonic-acid kinase
318	 37.74	0	353884..354927	+	347	68248868	opsX	NTHI0368	-	ADP-heptose--lipooligosaccharide heptosyltransferase I
319	 38.45	0	355249..357378	+	709	68248869	hxuC	NTHI0369	-	heme-hemopexin utilization protein C
320	 36.98	0	357454..359151	+	565	68248870	hxuB	NTHI0370	-	heme/hemopexin-binding protein B
321	 35.18	0	359163..361928	+	921	68248871	hxuA	NTHI0371	-	heme/hemopexin-binding protein A
322	 36.97	0	362024..362380	-	118	68248872	folB	NTHI0372	-	dihydroneopterin aldolase
323	 39.83	0	362463..363062	+	199	68248873	-	NTHI0373	-	putative glycerol-3-phosphate acyltransferase PlsY
324	 37.56	0	363104..364807	+	567	68248874	narQ	NTHI0374	-	nitrate/nitrite sensor protein NarQ
325	 37.43	0	364817..365842	+	341	68248875	murB	NTHI0375	-	UDP-N-acetylenolpyruvoylglucosamine reductase
326	 40.07	0	365968..366813	+	281	68248876	rpoH	NTHI0376	-	RNA polymerase factor sigma-32
327	 39.56	0	367280..368146	-	288	68248877	djlA	NTHI0379	-	DNA-J like membrane chaperone protein
328	 41.59	0	368225..368866	-	213	68248878	pyrE	NTHI0380	-	orotate phosphoribosyltransferase
329	 43.24	+1	368890..369606	-	238	68248879	rph	NTHI0381	-	ribonuclease PH
330	 40.89	0	369907..371349	-	480	68248880	gltX	NTHI0382	-	glutamyl-tRNA synthetase
331	 36.17	0	372099..373754	+	551	68248881	lpt6	NTHI0383	-	PE-tn-6--lipooligosaccharide phosphorylethanolamine transferase
332	 33.83	-1	373772..374581	-	269	68248882	rbn	NTHI0384	-	ribonuclease BN
333	 37.65	0	374578..375063	-	161	68248883	-	NTHI0386	-	hypothetical protein
334	 35.90	0	375066..375728	-	220	68248884	-	NTHI0387	-	hypothetical protein
335	 41.37	0	375964..376722	+	252	161761279	udp	NTHI0389	-	uridine phosphorylase
336	 39.10	0	376948..378264	-	438	68248886	-	NTHI0390	-	metabolite transport protein
337	 35.89	0	378320..379063	-	247	68248887	-	NTHI0391	-	acyl-CoA thioester hydrolase YfbB
338	 41.30	0	379124..380830	-	568	68248888	menD	NTHI0392	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
339	 39.62	0	380846..382117	-	423	68248889	menF	NTHI0393	-	menaquinone-specific isochorismate synthase
340	 41.07	0	382274..383488	+	404	68248890	aspC3	NTHI0395	-	aminotransferase AlaT
341	 39.62	0	383605..384861	+	418	68248891	mtr	NTHI0396	-	tryptophan-specific transport protein
342	 41.81	0	384970..386337	-	455	68248892	sdaA	NTHI0397	-	L-serine dehydratase
343	 36.97	0	386372..387610	-	412	68248893	sdaC	NTHI0398	-	serine transporter
344	 41.08	0	387833..390001	-	722	68248894	-	NTHI0399	-	putative cation-transporting ATPase
345	 36.95	0	390841..391227	+	128	68248895	-	NTHI0403	-	heavy metal dependent transcriptional regulator
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.