IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
193	 38.63	0	211226..212434	+	402	68248743	-	NTHI0221	-	sugar efflux transporter
194	 39.87	0	212495..214009	-	504	68248744	engA	NTHI0222	-	GTP-binding protein EngA
195	 36.20	0	214691..215458	-	255	68248745	dnaQ	NTHI0223	-	DNA polymerase III subunit epsilon
196	 34.84	0	215519..215983	+	154	68248746	rnhA	NTHI0224	-	ribonuclease H
197	 36.43	0	216249..217346	+	365	68248747	ompP2	NTHI0225	-	Outer membrane protein P2 precursor
198	 38.92	0	217543..218688	-	381	68248748	nagA	NTHI0226	-	N-acetylglucosamine-6-phosphate deacetylase
199	 38.25	0	218825..219637	-	270	68248749	nagB	NTHI0227	-	glucosamine-6-phosphate deaminase
200	 38.21	0	219973..220854	-	293	68248750	nanA	NTHI0228	-	N-acetylneuraminate lyase
201	 37.25	0	220865..221731	-	288	68248751	-	NTHI0229	-	putative HTH-type transcriptional regulator
202	 39.98	0	221724..222626	-	300	68248752	nanK	NTHI0230	-	N-acetylmannosamine kinase
203	 42.50	+1	222671..223357	-	228	68248753	nanE	NTHI0231	-	N-acetylmannosamine-6-phosphate 2-epimerase
204	 36.36	0	223707..224696	+	329	68248754	-	NTHI0232	-	putative sialic acid transporter, TRAP-type C4-dicarboxylate transport system, periplasmic component
205	 37.01	0	224761..226611	+	616	68248755	siaT	NTHI0234	-	hypothetical protein
206	 40.35	0	226775..227914	+	379	68248756	-	NTHI0235	-	hypothetical protein
207	 34.02	-1	228076..228510	+	144	68248757	-	NTHI0236	-	putative protein-S-isoprenylcysteine methyltransferase
208	 38.29	0	228552..229439	-	295	68248758	hflC	NTHI0237	-	hypothetical protein
209	 40.88	0	229439..230671	-	410	68248759	hflK	NTHI0239	-	HflK
210	 35.31	0	230781..231488	-	235	68248760	-	NTHI0240	-	putative 4'-phosphopantetheinyl transferase
211	 39.56	0	231548..232879	-	443	68248761	dcuB2	NTHI0242	-	anaerobic C4-dicarboxylate transporter
212	 32.03	-1	233083..233313	-	76	68248762	acpP	NTHI0243	-	acyl carrier protein
213	 39.64	0	233573..234301	-	242	68248763	fabG	NTHI0244	-	3-ketoacyl-(acyl-carrier-protein) reductase
214	 42.17	+1	234318..235256	-	312	68248764	fabD	NTHI0245	-	acyl carrier protein S-malonyltransferase
215	 40.59	0	235756..236706	-	316	68248765	fabH	NTHI0247	-	3-oxoacyl-(acyl carrier protein) synthase III
216	 42.11	+1	236892..237062	-	56	68248766	rpmF	NTHI0248	-	50S ribosomal protein L32
217	 40.95	0	237085..237609	-	174	68248767	-	NTHI0249	-	hypothetical protein
218	 37.11	0	237766..238638	+	290	68248768	psd	NTHI0250	-	phosphatidylserine decarboxylase
219	 38.44	0	238747..240117	-	456	68248769	gor	NTHI0251	-	glutathione reductase
220	 34.83	0	240333..240932	-	199	68248770	-	NTHI0252	-	lipoprotein
221	 38.47	0	241628..242971	+	447	68248771	nqrA	NTHI0254	-	Na(+)-translocating NADH-quinone reductase subunit A
222	 41.26	0	242974..244209	+	411	68248772	nqrB	NTHI0255	-	Na(+)-translocating NADH-quinone reductase subunit B
223	 37.14	0	244202..244936	+	244	68248773	nqrC	NTHI0256	-	Na(+)-translocating NADH-quinone reductase subunit C
224	 36.52	0	244936..245562	+	208	68248774	nqrD	NTHI0257	-	Na(+)-translocating NADH-quinone reductase subunit D
225	 36.18	0	245566..246162	+	198	68248775	nqrE	NTHI0258	-	Na(+)-translocating NADH-quinone reductase subunit E
226	 39.40	0	246175..247410	+	411	68248776	nqrF	NTHI0259	-	Na(+)-translocating NADH-quinone reductase subunit F
227	 38.52	0	247554..248594	+	346	68248777	apbE	NTHI0260	-	thiamine biosynthesis lipoprotein ApbE
228	 33.72	-1	248597..248857	+	86	68248778	-	NTHI0261	-	hypothetical protein
229	 38.61	0	248932..250125	+	397	68248779	trmU	NTHI0262	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
230	 39.46	0	250169..250903	-	244	68248780	-	NTHI0263	-	hypothetical protein
231	 41.33	0	250905..251879	-	324	68248781	rluD	NTHI0264	-	23S rRNA pseudouridine synthase D
232	 36.25	0	251987..252775	+	262	68248782	-	NTHI0266	-	hypothetical protein
233	 36.23	0	252854..253336	-	160	68248783	-	NTHI0267	-	hypothetical protein
234	 37.92	0	253368..254108	-	246	68248784	pflA	NTHI0268	-	pyruvate formate lyase-activating enzyme 1
235	 39.59	0	254233..256551	-	772	68248785	pflB	NTHI0269	-	formate acetyltransferase
236	 38.60	0	256583..257437	-	284	68248786	focA	NTHI0270	-	putative formate transporter
237	 40.44	0	257942..258856	+	304	68248787	-	NTHI0273	-	N-acetyl-D-glucosamine kinase
238	 40.18	0	259035..260480	+	481	68248788	-	NTHI0274	-	putative Na+/alanine symporter
239	 44.20	+1	260665..261492	-	275	68248789	-	NTHI0275	-	esterase
240	 37.75	0	262760..263167	+	135	68248790	-	NTHI0278	-	putative HTH-type transcriptional regulator
241	 32.64	-1	263325..263612	+	95	68248791	tatA	NTHI0279	-	Sec-independent protein translocase protein TatA/E
242	 37.25	0	263616..264176	+	186	68248792	tatB	NTHI0280	-	sec-independent translocase
243	 36.32	0	264186..264956	+	256	68248793	tatC	NTHI0282	-	Sec-independent protein translocase protein TatC
244	 39.04	0	265317..266666	+	449	68248794	gdhA	NTHI0283	-	glutamate dehydrogenase
245	 31.07	-2	266774..267214	-	146	68248795	fur	NTHI0284	-	ferric uptake regulation protein
246	 38.29	0	267243..267767	-	174	68248796	fldA	NTHI0285	-	flavodoxin FldA
247	 32.41	-1	267864..268727	-	287	68248797	-	NTHI0286	-	esterase/lipase
248	 36.14	0	268717..269322	+	201	68248798	seqA	NTHI0289	-	replication initiation regulator SeqA
249	 35.98	0	269325..270683	+	452	68248799	menE	NTHI0290	-	O-succinylbenzoic acid--CoA ligase
250	 34.02	-1	270711..274049	+	1112	68248800	-	NTHI0291	-	potassium efflux protein KefA
251	 42.36	+1	274059..275132	+	357	68248801	aroC	NTHI0292	-	chorismate synthase
252	 43.21	+1	275305..276165	+	286	68248802	mepA	NTHI0294	-	penicillin-insensitive murein endopeptidase
253	 38.93	0	276183..276950	+	255	68248803	-	NTHI0295	-	hypothetical protein
254	 38.98	0	276997..277953	+	318	68248804	msbB	NTHI0296	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
255	 40.02	0	278080..279051	+	323	68248805	selD	NTHI0297	-	selenide, water dikinase
256	 41.31	0	279160..279510	-	116	68248806	rplS	NTHI0298	-	50S ribosomal protein L19
257	 44.40	+1	279547..280287	-	246	68248807	trmD	NTHI0299	-	tRNA (guanine-N(1)-)-methyltransferase
258	 36.36	0	280325..280852	-	175	68248808	rimM	NTHI0300	-	16S rRNA-processing protein
259	 44.18	+1	280897..281145	-	82	68248809	rpsP	NTHI0301	-	30S ribosomal protein S16
260	 31.30	-1	281425..282210	+	261	68248810	-	NTHI0302	-	hypothetical protein
261	 36.70	0	282233..284044	+	603	68248811	nadN	NTHI0303	-	NAD nucleotidase
262	 37.94	0	284329..284871	+	180	68248812	aroK	NTHI0305	-	shikimate kinase
263	 42.70	+1	284891..285979	+	362	68248813	aroB	NTHI0306	-	3-dehydroquinate synthase
264	 34.84	0	285981..286841	+	286	68248814	dam	NTHI0307	-	DNA adenine methylase
265	 25.00	-2	287806..287913	+	35	68248815	-	NTHI0307_1	-	hypothetical protein
266	 38.43	0	287932..288657	-	241	68248816	pgpB	NTHI0308	-	phosphatidylglycerophosphatase B
267	 38.37	0	288703..289377	+	224	68248817	ribA	NTHI0309	-	GTP cyclohydrolase II
268	 36.12	0	289693..291237	-	514	68248818	-	NTHI0310	-	putative ABC-type oligopeptide transport system, periplasmic component
269	 29.48	-2	291230..291592	-	120	68248819	-	NTHI0311	-	hypothetical protein
270	 40.66	0	291711..293756	+	681	68248820	prlC	NTHI0312	-	oligopeptidase A
271	 39.81	0	293988..295532	+	514	68248821	hsdM2	NTHI0314	-	putative type I restriction-modification system methyltransferase subunit
272	 35.04	0	295617..296789	+	390	68248822	hsdS2	NTHI0315	-	putative type I restriction-modification system specificity protein
273	 28.74	-2	296791..297945	+	384	68248823	prrC	NTHI0316	-	putative anticodon nuclease
274	 35.44	0	297948..298946	+	332	68248824	-	NTHI0317	-	DNA binding protein
275	 36.58	0	298957..302040	+	1027	68248825	hsdR2	NTHI0318	-	putative type I restriction-modification system
276	 37.94	0	302187..302816	-	209	68248826	-	NTHI0319	-	hypothetical protein
277	 34.09	-1	303030..304871	-	613	68248827	arcB	NTHI0321	-	aerobic respiration control sensor protein ArcB
278	 34.11	-1	304940..305584	-	214	68248828	-	NTHI0322	-	uracil-DNA glycosylase
279	 35.53	0	311636..312544	-	302	68248829	birA	NTHI0323	-	biotin--protein ligase
280	 42.60	+1	312671..314137	+	488	68248830	guaB	NTHI0324	-	inositol-5-monophosphate dehydrogenase
281	 43.51	+1	314247..315818	+	523	68248831	guaA	NTHI0326	-	bifunctional GMP synthase/glutamine amidotransferase protein
282	 36.88	0	315880..316782	-	300	68248832	-	NTHI0327	-	hypothetical protein
283	 35.90	0	316845..317351	+	168	68248833	-	NTHI0328	-	putative transcriptional regulator
284	 36.33	0	317390..318592	-	400	68248834	nhaA	NTHI0329	-	Na(+)/H(+) antiporter 1
285	 37.30	0	318780..320090	+	436	68248835	brnQ	NTHI0331	-	branched chain amino acid ABC transporter carrier protein
286	 33.55	-1	320198..320665	-	155	68248836	-	NTHI0332	-	hypothetical protein
287	 29.98	-2	320692..321138	-	148	68248837	-	NTHI0333	-	hypothetical protein
288	 42.44	+1	321411..323540	+	709	68248838	pnp	NTHI0334	-	polynucleotide phosphorylase/polyadenylase
289	 38.41	0	323622..324566	+	314	68248839	nlpL	NTHI0335	-	lipoprotein NlpI
290	 41.86	0	324686..326527	+	613	68248840	deaD	NTHI0337	-	cold-shock DEAD-box protein A-like protein
291	 34.70	-1	326705..328093	+	462	68248841	-	NTHI0338	-	putative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein
292	 28.10	-2	328098..328250	+	50	68248842	-	NTHI0339	-	hypothetical protein
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.