IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
149	 38.41	0	150336..151280	-	314	68248699	thrB	NTHI0166	-	homoserine kinase
150	 40.60	0	151293..153740	-	815	68248700	thrA	NTHI0167	-	bifunctional aspartokinase I/homeserine dehydrogenase I
151	 38.66	0	154064..154777	+	237	68248701	-	NTHI0168	-	hypothetical protein
152	 44.50	+1	154817..155953	-	378	68248702	grk	NTHI0169	-	glycerate kinase
153	 43.49	+1	155962..157221	-	419	68248703	-	NTHI0171	-	hypothetical protein
154	 37.76	0	157343..158449	-	368	68248704	-	NTHI0172	-	hypothetical protein
155	 36.45	0	158651..158971	-	106	68248705	-	NTHI0173	-	hypothetical protein
156	 37.30	0	159322..160077	-	251	68248706	-	NTHI0175	-	hypothetical protein
157	 32.62	-1	160278..160559	+	93	68248707	-	NTHI0176	-	hypothetical protein
158	 39.74	0	160711..161709	+	332	68248708	hitA	NTHI0177	-	iron-utilization periplasmic protein hFbpA
159	 39.78	0	161827..163347	+	506	68248709	hitB	NTHI0179	-	iron(III)-transport system permease protein hFbpB
160	 38.64	0	163349..164404	+	351	68248710	hitC	NTHI0180	-	iron-utilization ATP-binding protein hFbpC
161	 39.94	0	164439..165119	-	226	68248711	-	NTHI0181	-	putative D-alanyl-D-alanine carboxypeptidase
162	 41.09	0	165121..166254	-	377	68248712	dapE	NTHI0182	-	succinyl-diaminopimelate desuccinylase
163	 37.39	0	166282..166626	-	114	68248713	-	NTHI0184	-	hypothetical protein
164	 37.87	0	166705..168600	-	631	68248714	htpG	NTHI0185	-	heat shock protein 90
165	 39.29	0	168812..169651	+	279	68248715	-	NTHI0186	-	NIF3-like protein
166	 44.29	+1	169825..172197	+	790	68248716	hsdM1	NTHI0188	-	putative type I restriction-modification system, methyltransferase subunit
167	 35.96	0	172380..173789	+	469	68248717	-	NTHI0190	-	transcription regulator
168	 36.69	0	173961..175211	+	416	68248718	hsdS1	NTHI0192	-	putative type I site-specific restriction-modification system, S subunit
169	 44.00	+1	175311..178337	+	1008	68248719	hsdR1	NTHI0193	-	putative type I site-specific restriction-modification system, R subunit
170	 43.19	+1	178562..179941	-	459	68248720	ffh	NTHI0194	-	Signal recognition particle protein
171	 38.05	0	180192..181484	+	430	68248721	corB	NTHI0196	-	putative Mg2+ and Co2+ transporter
172	 40.73	0	181505..182383	+	292	68248722	-	NTHI0197	-	hypothetical protein
173	 38.12	0	182385..182864	+	159	68248723	-	NTHI0198	-	hypothetical protein
174	 30.12	-2	182954..183295	-	113	68248724	-	NTHI0199	-	hypothetical protein
175	 39.84	0	183462..184751	+	429	68248725	serS	NTHI0200	-	seryl-tRNA synthetase
176	 37.14	0	185086..185715	+	209	68248726	gst	NTHI0201	-	glutathione S-transferase
177	 28.28	-2	185727..186023	-	98	68248727	-	NTHI0201_1	-	hypothetical protein
178	 32.89	-1	186076..188313	+	745	68248728	hemR	NTHI0202	-	hemin receptor
179	 37.59	0	195361..197496	-	711	68248729	-	NTHI0203	-	23S rRNA m(2)G2445 methyltransferase
180	 38.47	0	197889..198998	+	369	68248730	mltA	NTHI0205	-	murein transglycosylase A
181	 41.25	0	198998..199768	+	256	68248731	-	NTHI0206	-	hypothetical protein
182	 36.93	0	199946..200947	+	333	68248732	znuA	NTHI0208	-	high-affinity zinc transporter periplasmic component
183	 34.71	-1	200997..201503	-	168	68248733	-	NTHI0209	-	hypothetical protein
184	 39.29	0	201616..202974	-	452	68248734	mpl	NTHI0210	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
185	 38.05	0	203359..204546	-	395	68248735	metC	NTHI0211	-	cystathionine beta-lyase
186	 39.08	0	204677..205285	+	202	68248736	tsaA	NTHI0212	-	peroxiredoxin
187	 37.10	0	205386..205943	+	185	68248737	pgsA	NTHI0213	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
188	 38.61	0	206507..207037	-	176	68248738	ppa	NTHI0214	-	inorganic pyrophosphatase
189	 41.38	0	207271..208587	+	438	68248739	-	NTHI0215	-	hypothetical protein
190	 38.01	0	208810..209451	+	213	68248740	udk	NTHI0218	-	uridine kinase
191	 40.99	0	209460..210047	+	195	68248741	dcd	NTHI0219	-	deoxycytidine triphosphate deaminase
192	 33.33	-1	210051..211226	+	391	68248742	-	NTHI0220	-	hypothetical protein
193	 38.63	0	211226..212434	+	402	68248743	-	NTHI0221	-	sugar efflux transporter
194	 39.87	0	212495..214009	-	504	68248744	engA	NTHI0222	-	GTP-binding protein EngA
195	 36.20	0	214691..215458	-	255	68248745	dnaQ	NTHI0223	-	DNA polymerase III subunit epsilon
196	 34.84	0	215519..215983	+	154	68248746	rnhA	NTHI0224	-	ribonuclease H
197	 36.43	0	216249..217346	+	365	68248747	ompP2	NTHI0225	-	Outer membrane protein P2 precursor
198	 38.92	0	217543..218688	-	381	68248748	nagA	NTHI0226	-	N-acetylglucosamine-6-phosphate deacetylase
199	 38.25	0	218825..219637	-	270	68248749	nagB	NTHI0227	-	glucosamine-6-phosphate deaminase
200	 38.21	0	219973..220854	-	293	68248750	nanA	NTHI0228	-	N-acetylneuraminate lyase
201	 37.25	0	220865..221731	-	288	68248751	-	NTHI0229	-	putative HTH-type transcriptional regulator
202	 39.98	0	221724..222626	-	300	68248752	nanK	NTHI0230	-	N-acetylmannosamine kinase
203	 42.50	+1	222671..223357	-	228	68248753	nanE	NTHI0231	-	N-acetylmannosamine-6-phosphate 2-epimerase
204	 36.36	0	223707..224696	+	329	68248754	-	NTHI0232	-	putative sialic acid transporter, TRAP-type C4-dicarboxylate transport system, periplasmic component
205	 37.01	0	224761..226611	+	616	68248755	siaT	NTHI0234	-	hypothetical protein
206	 40.35	0	226775..227914	+	379	68248756	-	NTHI0235	-	hypothetical protein
207	 34.02	-1	228076..228510	+	144	68248757	-	NTHI0236	-	putative protein-S-isoprenylcysteine methyltransferase
208	 38.29	0	228552..229439	-	295	68248758	hflC	NTHI0237	-	hypothetical protein
209	 40.88	0	229439..230671	-	410	68248759	hflK	NTHI0239	-	HflK
210	 35.31	0	230781..231488	-	235	68248760	-	NTHI0240	-	putative 4'-phosphopantetheinyl transferase
211	 39.56	0	231548..232879	-	443	68248761	dcuB2	NTHI0242	-	anaerobic C4-dicarboxylate transporter
212	 32.03	-1	233083..233313	-	76	68248762	acpP	NTHI0243	-	acyl carrier protein
213	 39.64	0	233573..234301	-	242	68248763	fabG	NTHI0244	-	3-ketoacyl-(acyl-carrier-protein) reductase
214	 42.17	+1	234318..235256	-	312	68248764	fabD	NTHI0245	-	acyl carrier protein S-malonyltransferase
215	 40.59	0	235756..236706	-	316	68248765	fabH	NTHI0247	-	3-oxoacyl-(acyl carrier protein) synthase III
216	 42.11	+1	236892..237062	-	56	68248766	rpmF	NTHI0248	-	50S ribosomal protein L32
217	 40.95	0	237085..237609	-	174	68248767	-	NTHI0249	-	hypothetical protein
218	 37.11	0	237766..238638	+	290	68248768	psd	NTHI0250	-	phosphatidylserine decarboxylase
219	 38.44	0	238747..240117	-	456	68248769	gor	NTHI0251	-	glutathione reductase
220	 34.83	0	240333..240932	-	199	68248770	-	NTHI0252	-	lipoprotein
221	 38.47	0	241628..242971	+	447	68248771	nqrA	NTHI0254	-	Na(+)-translocating NADH-quinone reductase subunit A
222	 41.26	0	242974..244209	+	411	68248772	nqrB	NTHI0255	-	Na(+)-translocating NADH-quinone reductase subunit B
223	 37.14	0	244202..244936	+	244	68248773	nqrC	NTHI0256	-	Na(+)-translocating NADH-quinone reductase subunit C
224	 36.52	0	244936..245562	+	208	68248774	nqrD	NTHI0257	-	Na(+)-translocating NADH-quinone reductase subunit D
225	 36.18	0	245566..246162	+	198	68248775	nqrE	NTHI0258	-	Na(+)-translocating NADH-quinone reductase subunit E
226	 39.40	0	246175..247410	+	411	68248776	nqrF	NTHI0259	-	Na(+)-translocating NADH-quinone reductase subunit F
227	 38.52	0	247554..248594	+	346	68248777	apbE	NTHI0260	-	thiamine biosynthesis lipoprotein ApbE
228	 33.72	-1	248597..248857	+	86	68248778	-	NTHI0261	-	hypothetical protein
229	 38.61	0	248932..250125	+	397	68248779	trmU	NTHI0262	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
230	 39.46	0	250169..250903	-	244	68248780	-	NTHI0263	-	hypothetical protein
231	 41.33	0	250905..251879	-	324	68248781	rluD	NTHI0264	-	23S rRNA pseudouridine synthase D
232	 36.25	0	251987..252775	+	262	68248782	-	NTHI0266	-	hypothetical protein
233	 36.23	0	252854..253336	-	160	68248783	-	NTHI0267	-	hypothetical protein
234	 37.92	0	253368..254108	-	246	68248784	pflA	NTHI0268	-	pyruvate formate lyase-activating enzyme 1
235	 39.59	0	254233..256551	-	772	68248785	pflB	NTHI0269	-	formate acetyltransferase
236	 38.60	0	256583..257437	-	284	68248786	focA	NTHI0270	-	putative formate transporter
237	 40.44	0	257942..258856	+	304	68248787	-	NTHI0273	-	N-acetyl-D-glucosamine kinase
238	 40.18	0	259035..260480	+	481	68248788	-	NTHI0274	-	putative Na+/alanine symporter
239	 44.20	+1	260665..261492	-	275	68248789	-	NTHI0275	-	esterase
240	 37.75	0	262760..263167	+	135	68248790	-	NTHI0278	-	putative HTH-type transcriptional regulator
241	 32.64	-1	263325..263612	+	95	68248791	tatA	NTHI0279	-	Sec-independent protein translocase protein TatA/E
242	 37.25	0	263616..264176	+	186	68248792	tatB	NTHI0280	-	sec-independent translocase
243	 36.32	0	264186..264956	+	256	68248793	tatC	NTHI0282	-	Sec-independent protein translocase protein TatC
244	 39.04	0	265317..266666	+	449	68248794	gdhA	NTHI0283	-	glutamate dehydrogenase
245	 31.07	-2	266774..267214	-	146	68248795	fur	NTHI0284	-	ferric uptake regulation protein
246	 38.29	0	267243..267767	-	174	68248796	fldA	NTHI0285	-	flavodoxin FldA
247	 32.41	-1	267864..268727	-	287	68248797	-	NTHI0286	-	esterase/lipase
248	 36.14	0	268717..269322	+	201	68248798	seqA	NTHI0289	-	replication initiation regulator SeqA
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.