IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1627	 40.05	0	1715203..1717167	-	654	68250177	-	NTHI1867	-	phage-related tail protein
1628	 37.89	0	1717210..1717977	-	255	68250178	-	NTHI1869	-	hypothetical protein
1629	 33.63	-1	1718022..1718360	+	112	68250179	-	NTHI1870	-	hypothetical protein
1630	 39.34	0	1718371..1718553	-	60	68250180	-	NTHI1871	-	hypothetical protein
1631	 33.91	-1	1718657..1719004	+	115	68250181	-	NTHI1872	-	hypothetical protein
1632	 44.59	+1	1719005..1719466	-	153	68250182	-	NTHI1873	-	bacteriophage tail completion protein gpS-like protein
1633	 41.86	0	1719466..1719852	-	128	68250183	-	NTHI1874	-	bacteriophage tail completion protein gpR-like protein
1634	 41.67	0	1719902..1720009	-	35	68250184	-	NTHI1875	-	hypothetical protein
1635	 39.84	0	1720042..1720164	-	40	68250185	-	NTHI1876	-	hypothetical protein
1636	 42.59	+1	1720161..1720376	-	71	68250186	-	NTHI1878	-	DnaK suppressor protein
1637	 38.46	0	1720551..1720901	-	116	68250187	-	NTHI1879	-	hypothetical protein
1638	 40.85	0	1720886..1721404	-	172	68250188	-	NTHI1880	-	phage-related lysozyme
1639	 36.94	0	1721397..1721618	-	73	68250189	-	NTHI1881	-	hypothetical protein
1640	 39.52	0	1721620..1721829	-	69	68250190	-	NTHI1882	-	hypothetical protein
1641	 44.18	+1	1721829..1722335	-	168	68250191	-	NTHI1883	-	hypothetical protein
1642	 45.01	+1	1722629..1723279	-	216	68250192	-	NTHI1884	-	terminase, endonuclease subunit
1643	 41.90	0	1723291..1724340	-	349	68250193	-	NTHI1885	-	major capsid protein
1644	 41.79	0	1724361..1725176	-	271	68250194	-	NTHI1887	-	capsid scaffolding protein
1645	 41.36	0	1725341..1727122	+	593	68250195	-	NTHI1888	-	terminase, ATPase subunit
1646	 38.08	0	1727132..1728142	+	336	68250196	-	NTHI1890	-	portal vertex protein
1647	 39.41	0	1728850..1729524	-	224	68250197	siaB	NTHI1891	-	acylneuraminate cytidylyltransferase
1648	 42.68	+1	1729638..1730300	+	220	68250198	-	NTHI1892	-	putative NAD(P)H nitroreductase
1649	 40.97	0	1730347..1731459	-	370	161761262	mrp	NTHI1893	-	putative ATPase
1650	 40.07	0	1731610..1733658	+	682	68250200	metG	NTHI1894	-	methionyl-tRNA synthetase
1651	 36.35	0	1733769..1734629	+	286	68250201	tehB	NTHI1895	-	tellurite resistance protein TehB
1652	 40.74	0	1734673..1735374	-	233	68250202	gloB	NTHI1896	-	hydroxyacylglutathione hydrolase
1653	 39.28	0	1735426..1736232	-	268	68250203	-	NTHI1897	-	hypothetical protein
1654	 35.22	0	1736468..1736944	+	158	68250204	-	NTHI1898	-	hypothetical protein
1655	 40.02	0	1737081..1738844	+	587	68250205	-	NTHI1899	-	hypothetical protein
1656	 41.47	0	1739444..1742086	+	880	68250206	gyrA	NTHI1900	-	DNA gyrase subunit A
1657	 39.74	0	1742141..1743217	-	358	68250207	metX	NTHI1901	-	homoserine O-acetyltransferase
1658	 39.46	0	1743321..1744055	+	244	68250208	sanA	NTHI1902	-	SanA
1659	 40.49	0	1744343..1745656	-	437	68250209	folC	NTHI1903	-	folylpolyglutamate synthase
1660	 39.62	0	1745649..1746539	-	296	68250210	accD	NTHI1904	-	acetyl-CoA carboxylase subunit beta
1661	 38.72	0	1746733..1748124	+	463	68250211	htoA	NTHI1905	-	periplasmic serine protease do/HhoA-like precursor
1662	 40.19	0	1748177..1751617	-	1146	68250212	mfd	NTHI1906	-	transcription-repair coupling factor
1663	 35.63	0	1751719..1751892	-	57	68250213	-	NTHI1907	-	hypothetical protein
1664	 39.57	0	1751889..1753859	-	656	68250214	-	NTHI1908	-	P-loop ATPase fused to an acetyltransferase
1665	 32.46	-1	1753864..1754205	-	113	68250215	-	NTHI1910	-	hypothetical protein
1666	 43.81	+1	1754267..1755937	-	556	68250216	-	NTHI1911	-	putative ABC transporter ATP-binding protein
1667	 34.57	-1	1756100..1756423	-	107	68250217	-	NTHI1912	-	plasmid maintenance system antidote protein
1668	 26.14	-2	1756434..1756739	-	101	68250218	-	NTHI1913	-	plasmid maintenance system killer protein
1669	 35.43	0	1757064..1757684	+	206	68250219	-	NTHI1914	-	ABC transporter periplasmic component
1670	 40.04	0	1757687..1758655	+	322	68250220	-	NTHI1915	-	ABC transporter permease
1671	 39.66	0	1759269..1761308	+	679	68250221	uvrB	NTHI1917	-	excinuclease ABC subunit B
1672	 38.68	0	1761338..1763263	-	641	68250222	-	NTHI1918	-	phosphoglycerol transferase-like protein
1673	 41.17	0	1763504..1765774	-	756	68250223	mao2	NTHI1920	-	malic enzyme
1674	 36.07	0	1765972..1766592	+	206	68250224	-	NTHI1921	-	polysaccharide biosynthesis protein
1675	 36.91	0	1766683..1767381	+	232	68250225	rsuA	NTHI1922	-	ribosomal small subunit pseudouridine synthase A
1676	 41.94	+1	1767383..1768579	+	398	68250226	bcr	NTHI1923	-	bicyclomycin/multidrug efflux system
1677	 35.58	0	1768611..1769411	-	266	68250227	-	NTHI1924	-	hypothetical protein
1678	 42.99	+1	1769509..1770171	+	220	68250228	-	NTHI1925	-	hypothetical protein
1679	 40.67	0	1770192..1771445	+	417	68250229	proA	NTHI1926	-	gamma-glutamyl phosphate reductase
1680	 42.76	+1	1771524..1772669	-	381	68250230	dnaJ	NTHI1928	-	chaperone protein DnaJ
1681	 39.47	0	1772756..1774663	-	635	68250231	dnaK	NTHI1929	-	chaperone protein DnaK
1682	 34.10	-1	1774930..1776372	+	480	68250232	-	NTHI1930	-	hypothetical protein
1683	 38.56	0	1776529..1776987	-	152	68250233	mgsA	NTHI1931	-	methylglyoxal synthase
1684	 40.29	0	1777287..1779947	+	886	68250234	aceE	NTHI1933	-	pyruvate dehydrogenase subunit E1
1685	 42.17	+1	1780010..1781707	+	565	68250235	aceF	NTHI1934	-	dihydrolipoamide acetyltransferase
1686	 41.12	0	1781821..1783245	+	474	68250236	lpdA	NTHI1935	-	dihydrolipoamide dehydrogenase
1687	 28.70	-2	1783292..1783399	-	35	68250237	-	NTHI1936	-	hypothetical protein
1688	 35.91	0	1783405..1783947	+	180	68250238	apt	NTHI1938	-	adenine phosphoribosyltransferase
1689	 38.03	0	1783959..1786025	+	688	68250239	dnaX	NTHI1939	-	DNA polymerase III subunits gamma and tau
1690	 39.87	0	1786165..1786791	+	208	68250240	upp	NTHI1940	-	uracil phosphoribosyltransferase
1691	 40.40	0	1786895..1788139	+	414	68250241	uraA	NTHI1941	-	uracil permease
1692	 33.19	-1	1788205..1788900	+	231	68250242	-	NTHI1942	-	DNA replication initiation factor
1693	 37.94	0	1788967..1789248	-	93	68250243	-	NTHI1943	-	translation initiation factor 1-like proterin
1694	 38.82	0	1789255..1789947	-	230	68250244	pyrF	NTHI1944	-	orotidine 5'-phosphate decarboxylase
1695	 34.09	-1	1789971..1791161	-	396	68250245	-	NTHI1945	-	hypothetical protein
1696	 32.31	-1	1791161..1791454	-	97	68250246	-	NTHI1946	-	hypothetical protein
1697	 34.74	-1	1791529..1791813	-	94	68250247	ihfB	NTHI1947	-	integration host factor beta-subunit
1698	 37.58	0	1791936..1793585	-	549	68250248	rpsA	NTHI1948	-	30S ribosomal protein S1
1699	 38.49	0	1793688..1794482	-	264	68250249	cmk	NTHI1949	-	cytidylate kinase
1700	 43.49	+1	1794828..1795703	+	291	68250250	-	NTHI1950	-	pyridoxine biosynthesis protein
1701	 36.79	0	1795704..1796282	+	192	68250251	-	NTHI1951	-	glutamine amidotransferase subunit PdxT
1702	 39.35	0	1796831..1798525	-	564	68250252	dld	NTHI1952	-	D-lactate dehydrogenase
1703	 38.74	0	1798785..1798895	+	36	68250253	-	NTHI1953	-	hypothetical protein
1704	 35.87	0	1799430..1799981	-	183	68250254	nlpC	NTHI1954	-	lipoprotein NlpC
1705	 41.48	0	1800094..1801542	-	482	68250255	tldD	NTHI1955	-	hypothetical protein
1706	 40.26	0	1801644..1802495	-	283	68250256	-	NTHI1956	-	methyltransferase
1707	 39.18	0	1802567..1804294	+	575	68250257	-	NTHI1957	-	putative lipoprotein
1708	 36.39	0	1804294..1804653	+	119	68250258	-	NTHI1958	-	hypothetical protein
1709	 36.92	0	1804666..1805250	+	194	68250259	-	NTHI1959	-	hypothetical protein
1710	 40.55	0	1805307..1805888	+	193	68250260	-	NTHI1960	-	hypothetical protein
1711	 38.18	0	1806143..1808413	+	756	68250261	nrdA	NTHI1961	-	ribonucleotide-diphosphate reductase subunit alpha
1712	 37.40	0	1808555..1809685	+	376	68250262	nrdB	NTHI1962	-	ribonucleotide-diphosphate reductase subunit beta
1713	 40.16	0	1809801..1811030	-	409	68250263	sucB	NTHI1963	-	dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex
1714	 41.18	0	1811133..1813985	-	950	68250264	kgd	NTHI1964	-	alpha-ketoglutarate decarboxylase
1715	 36.46	0	1814143..1814781	-	212	68250265	-	NTHI1965	-	Zn-dependent hydrolase
1716	 35.58	0	1814791..1815546	-	251	68250266	-	NTHI1966	-	putative deoxyribonuclease
1717	 36.90	0	1815598..1816158	-	186	68250267	-	NTHI1967	-	hypothetical protein
1718	 35.44	0	1816174..1817643	-	489	68250268	-	NTHI1968	-	hypothetical protein
1719	 35.39	0	1817717..1819804	-	695	68250269	prc	NTHI1969	-	carboxy-terminal protease
1720	 38.03	0	1819826..1820464	-	212	68250270	proQ	NTHI1970	-	putative solute/DNA competence effector
1721	 34.29	-1	1820649..1821899	+	416	68250271	-	NTHI1972	-	paraquat-inducible protein A-like protein
1722	 37.26	0	1821883..1824528	+	881	68250272	-	NTHI1973	-	paraquat-inducible protein B-like protein
1723	 39.29	0	1824583..1825035	-	150	68250273	moaE	NTHI1974	-	molybdopterin converting factor subunit 2
1724	 39.43	0	1825036..1825281	-	81	68250274	moaD	NTHI1976	-	molybdopterin synthase small subunit
1725	 42.24	+1	1825283..1825765	-	160	68250275	moaC	NTHI1977	-	molybdenum cofactor biosynthesis protein C
1726	 39.25	0	1825857..1826870	-	337	68250276	moaA	NTHI1978	-	molybdenum cofactor biosynthesis protein A
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.