IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1530	 38.33	0	1598015..1599034	+	339	68250080	pyrD	NTHI1745	-	dihydroorotate dehydrogenase 2
1531	 42.42	+1	1599034..1599858	+	274	68250081	trpH	NTHI1746	-	TrpH
1532	 35.80	0	1599957..1600565	-	202	68250082	-	NTHI1748	-	hypothetical protein
1533	 39.07	0	1600693..1602087	-	464	68250083	fumC	NTHI1749	-	fumarate hydratase
1534	 30.67	-2	1602237..1603175	-	312	68250084	-	NTHI1750	-	glycosyl transferase family protein
1535	 36.78	0	1603831..1604265	+	144	68250085	holC	NTHI1753	-	DNA polymerase III subunit chi
1536	 33.92	-1	1604350..1604520	+	56	68250086	-	NTHI1754	-	hypothetical protein
1537	 32.27	-1	1604533..1604907	+	124	68250087	-	NTHI1755	-	hypothetical protein
1538	 23.81	-2	1604935..1605102	+	55	68250088	-	NTHI1756	-	hypothetical protein
1539	 38.10	0	1605129..1605443	+	104	68250089	-	NTHI1757	-	hypothetical protein
1540	 25.37	-2	1605487..1605888	+	133	68250090	-	NTHI1758	-	hypothetical protein
1541	 42.97	+1	1605940..1608804	+	954	68250091	valS	NTHI1760	-	valyl-tRNA synthetase
1542	 36.11	0	1608839..1608946	-	35	68250092	-	NTHI1762	-	hypothetical protein
1543	 39.54	0	1609234..1610667	-	477	68250093	trpC	NTHI1763	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
1544	 41.22	0	1610705..1611706	-	333	68250094	trpD	NTHI1764	-	anthranilate phosphoribosyltransferase
1545	 40.57	0	1611759..1612145	-	128	68250095	-	NTHI1765	-	hypothetical protein
1546	 37.93	0	1612194..1612781	-	195	68250096	trpG	NTHI1767	-	anthranilate synthase component II
1547	 37.70	0	1612794..1614350	-	518	68250097	trpE	NTHI1768	-	anthranilate synthase component I
1548	 29.72	-2	1615485..1615982	-	165	68250098	ftnB	NTHI1772	-	ferritin
1549	 31.51	-1	1615998..1616546	-	182	68250099	ftnA	NTHI1773	-	ferritin like protein 1
1550	 37.75	0	1616989..1618008	+	339	68250100	pstS	NTHI1774	-	phosphate-binding periplasmic protein precursor PstS
1551	 35.86	0	1618100..1619047	+	315	68250101	pstC	NTHI1775	-	phosphate transport system permease protein PstC
1552	 36.98	0	1619049..1619897	+	282	68250102	pstA	NTHI1776	-	phosphate transport system permease protein PstA
1553	 35.29	0	1619907..1620674	+	255	68250103	pstB	NTHI1777	-	phosphate import ATP-binding protein PstB
1554	 33.33	-1	1620771..1621466	+	231	68250104	phoB	NTHI1778	-	phosphate regulon transcriptional regulatory protein PhoB
1555	 27.62	-2	1621463..1622740	+	425	68250105	phoR	NTHI1779	-	phosphate regulon sensor protein PhoR
1556	 35.44	0	1623432..1624853	-	473	68250106	sbcB	NTHI1780	-	exonuclease I
1557	 34.47	-1	1624866..1625741	-	291	68250107	-	NTHI1781	-	hypothetical protein
1558	 27.72	-2	1625745..1626653	-	302	68250108	-	NTHI1782	-	hypothetical protein
1559	 40.06	0	1626723..1631255	-	1510	68250109	mukB	NTHI1784	-	cell division protein MukB
1560	 40.14	0	1631255..1631989	-	244	68250110	-	NTHI1785	-	condesin subunit E
1561	 28.80	-2	1631993..1633051	-	352	68250111	haeIIR	NTHI1786	-	type II restriction enzyme HaeII
1562	 30.83	-2	1633054..1634010	-	318	68250112	haeIIM	NTHI1787	-	modification methylase HaeII
1563	 38.52	0	1634023..1635450	-	475	68250113	mukF	NTHI1788	-	condesin subunit F
1564	 36.87	0	1635507..1636439	+	310	68250114	-	NTHI1789	-	ATPase
1565	 40.30	0	1636441..1636770	+	109	68250115	-	NTHI1790	-	putative dissimilatory sulfite reductase, desulfoviridin, gamma subunit
1566	 36.19	0	1636878..1637087	+	69	68250116	mop	NTHI1793	-	putative molybdenum-pterin binding protein
1567	 32.72	-1	1639787..1642567	+	926	68250117	pqqL	NTHI1796	-	putative zinc protease
1568	 41.10	0	1642690..1644621	-	643	68250118	thrS	NTHI1797	-	threonyl-tRNA synthetase
1569	 35.73	0	1644905..1645489	+	194	68250119	acpD	NTHI1798	-	acyl carrier protein phosphodiesterase
1570	 39.36	0	1645566..1648172	-	868	68250120	topA	NTHI1799	-	DNA topoisomerase I
1571	 33.77	-1	1648268..1649185	+	305	68250121	-	NTHI1800	-	putative HTH-type transcriptional regulator
1572	 41.40	0	1649249..1650673	-	474	68250122	pntB	NTHI1801	-	pyridine nucleotide transhydrogenase
1573	 42.63	+1	1650684..1652222	-	512	68250123	pntA	NTHI1802	-	NAD(P) transhydrogenase subunit alpha
1574	 41.08	0	1652483..1654948	-	821	68250124	glgP	NTHI1803	-	glycogen phosphorylase
1575	 45.84	+2	1655195..1656625	-	476	68250125	glgA	NTHI1806	-	glycogen synthase
1576	 41.27	0	1656733..1658067	-	444	68250126	glgC	NTHI1807	-	glucose-1-phosphate adenylyltransferase
1577	 42.29	+1	1658057..1660033	-	658	68250127	glgX	NTHI1808	-	glycogen operon protein GlgX
1578	 43.14	+1	1660132..1662324	-	730	68250128	glgB	NTHI1809	-	glycogen branching enzyme
1579	 38.71	0	1662334..1664433	-	699	68250129	malQ	NTHI1810	-	4-alpha-glucanotransferase
1580	 38.06	0	1664495..1664959	-	154	68250130	-	NTHI1811	-	hypothetical protein
1581	 39.55	0	1665025..1666698	-	557	68250131	glnS	NTHI1812	-	glutaminyl-tRNA synthetase
1582	 39.50	0	1667118..1668593	-	491	68250132	cafA	NTHI1813	-	ribonuclease G
1583	 39.74	0	1668709..1670223	+	504	68250133	putP	NTHI1814	-	sodium/proline symporter
1584	 38.92	0	1670220..1671185	+	321	68250134	-	NTHI1815	-	hypothetical protein
1585	 38.23	0	1671228..1672106	-	292	68250135	cdd	NTHI1816	-	cytidine deaminase
1586	 34.16	-1	1672380..1672862	+	160	68250136	-	NTHI1817	-	DNA-binding ferritin-like protein
1587	 37.21	0	1673434..1674672	-	412	68250137	pepT	NTHI1818	-	peptidase T
1588	 38.13	0	1674942..1676087	+	381	68250138	potA	NTHI1820	-	putrescine/spermidine ABC transporter ATPase protein
1589	 35.89	0	1676071..1676931	+	286	68250139	potB	NTHI1821	-	spermidine/putrescine ABC transporter membrane protein
1590	 36.71	0	1676931..1677701	+	256	68250140	potC	NTHI1822	-	spermidine/putrescine ABC transporter membrane protein
1591	 37.96	0	1677748..1678914	+	388	68250141	potD1	NTHI1823	-	spermidine/putrescine-binding periplasmic protein 1 precursor
1592	 39.76	0	1678995..1680938	-	647	68250142	uupA	NTHI1824	-	ABC transporter ATPase component
1593	 39.61	0	1681032..1682417	-	461	68250143	-	NTHI1825	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1594	 38.36	0	1682510..1683205	-	231	68250144	-	NTHI1826	-	putative effector of murein hydrolase
1595	 30.26	-2	1683224..1683646	-	140	68250145	-	NTHI1827	-	hypothetical protein
1596	 35.82	0	1683761..1684243	+	160	68250146	-	NTHI1828	-	micrococcal nuclease-like protein
1597	 41.08	0	1684245..1685444	+	399	68250147	nifS	NTHI1829	-	putative selenocysteine lyase
1598	 35.70	0	1685441..1685821	+	126	68250148	-	NTHI1830	-	hypothetical protein
1599	 37.97	0	1685812..1686609	+	265	68250149	-	NTHI1831	-	hypothetical protein
1600	 37.98	0	1686653..1687492	+	279	68250150	queF	NTHI1832	-	7-cyano-7-deazaguanine reductase
1601	 39.02	0	1687525..1688649	-	374	68250151	tyrA	NTHI1833	-	bifunctional chorismate mutase/prephenate dehydrogenase
1602	 42.56	+1	1688739..1689659	-	306	68250152	truB	NTHI1834	-	tRNA pseudouridine synthase B
1603	 40.31	0	1689659..1690045	-	128	68250153	rbfA	NTHI1835	-	ribosome-binding factor A
1604	 47.58	+2	1690210..1691880	+	556	68250154	hsdM3	NTHI1838	-	putative type I restriction enzyme HindVIIP M protein
1605	 36.26	0	1691873..1693138	+	421	68250155	hsdS3	NTHI1839	-	putative type I restriction enzyme HindVIIP specificity protein
1606	 30.37	-2	1693131..1694177	+	348	68250156	-	NTHI1841	-	hypothetical protein
1607	 43.02	+1	1694179..1697346	+	1055	68250157	hsdR3	NTHI1843	-	putative type I restriction enzyme HindVIIP R protein
1608	 40.71	0	1697425..1699959	-	844	68250158	infB	NTHI1844	-	translation initiation factor IF-2
1609	 38.64	0	1699971..1701458	-	495	68250159	nusA	NTHI1845	-	transcription elongation factor NusA
1610	 38.82	0	1701475..1701930	-	151	68250160	-	NTHI1846	-	hypothetical protein
1611	 42.88	+1	1703591..1704355	-	254	68250161	-	NTHI1849	-	hypothetical protein
1612	 41.48	0	1704359..1704886	-	175	68250162	-	NTHI1850	-	hypothetical protein
1613	 41.32	0	1704896..1706035	-	379	68250163	-	NTHI1851	-	hypothetical protein
1614	 42.28	+1	1706052..1706420	-	122	68250164	-	NTHI1852	-	hypothetical protein
1615	 40.02	0	1706434..1707255	-	273	68250165	-	NTHI1853	-	hypothetical protein
1616	 40.28	0	1707312..1707815	-	167	68250166	-	NTHI1855	-	hypothetical protein
1617	 35.82	0	1707812..1708414	-	200	68250167	-	NTHI1856	-	hypothetical protein
1618	 41.46	0	1708426..1710948	-	840	68250168	-	NTHI1857	-	tail fiber protein
1619	 42.27	+1	1710957..1711493	-	178	68250169	-	NTHI1858	-	bacteriophage P2-related tail formation protein gpI
1620	 42.95	+1	1711483..1712397	-	304	68250170	-	NTHI1860	-	phage-related baseplate assembly protein
1621	 41.89	0	1712394..1712732	-	112	68250171	-	NTHI1861	-	baseplate assembly protein W
1622	 46.50	+2	1712734..1713333	-	199	68250172	-	NTHI1862	-	phage P2-like baseplate assembly protein
1623	 35.90	0	1713437..1713865	-	142	68250173	-	NTHI1863	-	hypothetical protein
1624	 32.62	-1	1713874..1714431	-	185	68250174	-	NTHI1864	-	hypothetical protein
1625	 32.89	-1	1714529..1714981	-	150	68250175	-	NTHI1865	-	hypothetical protein
1626	 38.31	0	1714959..1715159	-	66	68250176	-	NTHI1866	-	hypothetical protein
1627	 40.05	0	1715203..1717167	-	654	68250177	-	NTHI1867	-	phage-related tail protein
1628	 37.89	0	1717210..1717977	-	255	68250178	-	NTHI1869	-	hypothetical protein
1629	 33.63	-1	1718022..1718360	+	112	68250179	-	NTHI1870	-	hypothetical protein
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.