IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1438	 38.38	0	1525148..1525345	+	65	161761264	rpmI	NTHI1642	-	50S ribosomal protein L35
1439	 42.94	+1	1525411..1525764	+	117	68249989	rplT	NTHI1643	-	50S ribosomal protein L20
1440	 35.70	0	1525877..1529512	+	1211	68249990	recB	NTHI1644	-	exodeoxyribonuclease V beta chain
1441	 38.85	0	1529512..1531434	+	640	68249991	recD	NTHI1646	-	exodeoxyribonuclease V alpha chain
1442	 33.56	-1	1531503..1531949	-	148	68249992	-	NTHI1647	-	hypothetical protein
1443	 37.04	0	1532046..1533851	+	601	68249993	lonB	NTHI1648	-	putative protease La
1444	 40.64	0	1534020..1534553	+	177	68249994	fabA	NTHI1649	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
1445	 30.18	-2	1534789..1535517	+	242	68249995	-	NTHI1650	-	hypothetical protein
1446	 40.58	0	1535514..1535651	+	45	68249996	-	NTHI1651	-	hypothetical protein
1447	 38.89	0	1535787..1536056	+	89	68249997	rpsO	NTHI1652	-	30S ribosomal protein S15
1448	 35.48	0	1536128..1536499	-	123	68249998	-	NTHI1653	-	putative transposase-like protein
1449	 46.15	+2	1536496..1536612	-	38	68249999	-	NTHI1654	-	hypothetical protein
1450	 37.57	0	1536828..1538267	-	479	68250000	dacB	NTHI1655	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
1451	 37.53	0	1538431..1538907	+	158	68250001	greA	NTHI1658	-	transcription elongation factor GreA
1452	 38.67	0	1538946..1539245	-	99	68250002	-	NTHI1659	-	RNA-binding protein
1453	 40.16	0	1539372..1540001	+	209	68250003	rrmJ	NTHI1660	-	23S rRNA methyltransferase J
1454	 41.61	0	1540092..1541999	+	635	68250004	ftsH	NTHI1662	-	cell division protein FtsH homolog 1
1455	 39.35	0	1542111..1542941	+	276	68250005	folP	NTHI1663	-	dihydropteroate synthase
1456	 41.03	0	1542974..1544311	+	445	68250006	mrsA	NTHI1664	-	phosphomannomutase
1457	 34.95	0	1544370..1544864	+	164	68250007	sixA	NTHI1666	-	phosphohistidine phosphatase SixA-like protein
1458	 36.81	0	1545066..1545641	+	191	68250008	-	NTHI1667	-	hypothetical protein
1459	 38.83	0	1545719..1547083	-	454	68250009	-	NTHI1668	-	hypothetical protein
1460	 41.13	0	1547310..1547450	+	46	68250010	-	NTHI1669	-	hypothetical protein
1461	 35.29	0	1547444..1547596	+	50	68250011	-	NTHI1671	-	hypothetical protein
1462	 32.33	-1	1547905..1548501	+	198	68250012	-	NTHI1673	-	RNA polymerase sigma factor
1463	 37.36	0	1548511..1548684	+	57	68250013	-	NTHI1674	-	hypothetical protein
1464	 37.54	0	1548779..1549681	-	300	68250014	-	NTHI1675	-	hypothetical protein
1465	 37.48	0	1549817..1550878	+	353	68250015	msaB	NTHI1677	-	bifunctional methionine sulfoxide reductase A/B protein
1466	 36.92	0	1550890..1551531	+	213	68250016	-	NTHI1678	-	hypothetical protein
1467	 36.94	0	1551576..1552046	+	156	68250017	-	NTHI1679	-	hypothetical protein
1468	 36.42	0	1552228..1552551	-	107	68250018	-	NTHI1680	-	dsDNA-mimic protein
1469	 39.89	0	1552618..1553349	-	243	68250019	moeB	NTHI1681	-	molybdopterin biosynthesis protein MoeB
1470	 40.08	0	1553353..1554567	-	404	68250020	moeA	NTHI1682	-	molybdopterin biosynthesis protein MoeA
1471	 36.83	0	1554705..1555361	+	218	68250021	folE	NTHI1683	-	GTP cyclohydrolase I
1472	 31.17	-2	1555365..1555688	+	107	68250022	-	NTHI1684	-	hypothetical protein
1473	 35.25	0	1555791..1556519	+	242	68250023	bioD	NTHI1685	-	dithiobiotin synthetase
1474	 36.63	0	1556608..1557486	-	292	68250024	metF	NTHI1686	-	5,10-methylenetetrahydrofolate reductase
1475	 42.19	+1	1557949..1558377	+	142	68250025	rplM	NTHI1687	-	50S ribosomal protein L13
1476	 44.78	+1	1558394..1558786	+	130	68250026	rpsI	NTHI1688	-	30S ribosomal protein S9
1477	 34.59	-1	1558967..1559605	+	212	68250027	sspA	NTHI1689	-	stringent starvation protein A
1478	 36.87	0	1559605..1560057	+	150	68250028	sspB	NTHI1690	-	ClpXP protease specificity-enhancing factor
1479	 39.14	0	1560093..1561970	-	625	68250029	dxs	NTHI1691	-	1-deoxy-D-xylulose-5-phosphate synthase
1480	 38.27	0	1562012..1562902	-	296	68250030	ispA	NTHI1692	-	geranyltranstransferase
1481	 38.04	0	1562902..1563156	-	84	68250031	xseB	NTHI1693	-	exodeoxyribonuclease VII small subunit
1482	 37.24	0	1563315..1564772	+	485	68250032	thiI	NTHI1694	-	thiamine biosynthesis protein ThiI
1483	 38.63	0	1564787..1565107	+	106	68250033	-	NTHI1695	-	hypothetical protein
1484	 35.83	0	1565101..1565820	+	239	68250034	truC	NTHI1696	-	tRNA pseudouridine synthase C
1485	 32.08	-1	1565813..1565971	+	52	68250035	-	NTHI1697	-	hypothetical protein
1486	 36.07	0	1566120..1566338	+	72	68250036	cspD	NTHI1698	-	cold shock-like protein CspD
1487	 38.16	0	1566477..1566953	-	158	68250037	-	NTHI1699	-	hypothetical protein
1488	 38.26	0	1567012..1567965	+	317	68250038	usg	NTHI1700	-	aspartate-semialdehyde dehydrogenase
1489	 42.38	+1	1568109..1568915	-	268	68250039	trpA	NTHI1701	-	tryptophan synthase subunit alpha
1490	 41.79	0	1568915..1570108	-	397	68250040	trpB	NTHI1702	-	tryptophan synthase subunit beta
1491	 41.50	0	1570125..1570883	-	252	68250041	-	NTHI1703	-	oxidoreductase
1492	 44.15	+1	1571063..1572097	+	344	68250042	purM	NTHI1704	-	phosphoribosylaminoimidazole synthetase
1493	 40.53	0	1572152..1572790	+	212	68250043	purN	NTHI1706	-	phosphoribosylglycinamide formyltransferase
1494	 36.56	0	1572874..1573710	-	278	68250044	-	NTHI1707	-	ABC transporter periplasmic protein
1495	 36.13	0	1573908..1574837	-	309	161761263	uspE	NTHI1708	-	universal stress protein UspE
1496	 34.75	-1	1574959..1575732	-	257	68250046	fnr	NTHI1709	-	fumarate/nitrate reduction transcriptional regulator
1497	 39.22	0	1576350..1576706	+	118	68250047	-	NTHI1711	-	putative integrase/recombinase
1498	 39.74	0	1576591..1576980	-	129	68250048	-	NTHI1712	-	hypothetical protein
1499	 41.67	0	1577285..1577536	-	83	68250049	-	NTHI1713	-	phage anti-repressor protein
1500	 32.39	-1	1577874..1579145	-	423	68250050	-	NTHI1714	-	hypothetical protein
1501	 30.88	-2	1579746..1579949	+	67	68250051	-	NTHI1715	-	hypothetical protein
1502	 31.45	-1	1579927..1580085	-	52	68250052	-	NTHI1716	-	hypothetical protein
1503	 39.64	0	1580413..1580634	-	73	68250053	-	NTHI1717	-	hypothetical protein
1504	 30.95	-2	1581561..1581896	-	111	68250054	-	NTHI1718	-	hypothetical protein
1505	 35.28	0	1581899..1582978	-	359	68250055	-	NTHI1719	-	hypothetical protein
1506	 39.34	0	1583030..1583728	-	232	68250056	-	NTHI1720	-	transcriptional regulator
1507	 43.39	+1	1583839..1584027	+	62	68250057	-	NTHI1721	-	hypothetical protein
1508	 40.59	0	1584076..1584516	+	146	68250058	-	NTHI1722	-	hypothetical protein
1509	 41.33	0	1584565..1585239	+	224	68250059	-	NTHI1723	-	hypothetical protein
1510	 40.45	0	1585236..1585994	+	252	68250060	-	NTHI1724	-	hypothetical protein
1511	 41.74	0	1585979..1586620	+	213	68250061	-	NTHI1725	-	hypothetical protein
1512	 41.33	0	1586617..1586841	+	74	68250062	-	NTHI1726	-	hypothetical protein
1513	 41.01	0	1586878..1587294	+	138	68250063	ninB	NTHI1727	-	putative recombination protein NinB
1514	 36.41	0	1587562..1587951	+	129	68250064	ninG	NTHI1728_1	-	putative recombination protein NinG-like protein
1515	 35.71	0	1587971..1588600	+	209	68250065	-	NTHI1729	-	hypothetical protein
1516	 34.05	-1	1588724..1589002	+	92	68250066	-	NTHI1730	-	hypothetical protein
1517	 39.16	0	1589052..1590029	-	325	68250067	-	NTHI1731	-	hypothetical protein
1518	 40.59	0	1590258..1591043	+	261	68250068	-	NTHI1733	-	hypothetical protein
1519	 41.53	0	1591074..1591256	+	60	68250069	-	NTHI1734	-	hypothetical protein
1520	 36.41	0	1591380..1591736	+	118	68250070	-	NTHI1735	-	hypothetical protein
1521	 39.23	0	1591816..1592307	+	163	68250071	-	NTHI1736	-	hypothetical protein
1522	 38.27	0	1592300..1592623	+	107	68250072	-	NTHI1737	-	hypothetical protein
1523	 40.78	0	1592535..1592816	+	93	68250073	-	NTHI1738	-	hypothetical protein
1524	 38.35	0	1592818..1593096	-	92	68250074	-	NTHI1739	-	hypothetical protein
1525	 39.57	0	1593141..1593653	+	170	68250075	-	NTHI1740	-	hypothetical protein
1526	 41.37	0	1593640..1594983	+	447	68250076	-	NTHI1741	-	phage terminase large subunit
1527	 39.78	0	1594985..1596319	+	444	68250077	-	NTHI1742	-	hypothetical protein
1528	 40.36	0	1596348..1597529	+	393	68250078	traN	NTHI1743	-	uncharacterized protein, homolog of phage Mu protein gp30
1529	 38.42	0	1597675..1597851	+	58	68250079	-	NTHI1744	-	hypothetical protein
1530	 38.33	0	1598015..1599034	+	339	68250080	pyrD	NTHI1745	-	dihydroorotate dehydrogenase 2
1531	 42.42	+1	1599034..1599858	+	274	68250081	trpH	NTHI1746	-	TrpH
1532	 35.80	0	1599957..1600565	-	202	68250082	-	NTHI1748	-	hypothetical protein
1533	 39.07	0	1600693..1602087	-	464	68250083	fumC	NTHI1749	-	fumarate hydratase
1534	 30.67	-2	1602237..1603175	-	312	68250084	-	NTHI1750	-	glycosyl transferase family protein
1535	 36.78	0	1603831..1604265	+	144	68250085	holC	NTHI1753	-	DNA polymerase III subunit chi
1536	 33.92	-1	1604350..1604520	+	56	68250086	-	NTHI1754	-	hypothetical protein
1537	 32.27	-1	1604533..1604907	+	124	68250087	-	NTHI1755	-	hypothetical protein
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.