IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1393	 40.00	0	1481859..1482413	-	184	68249943	-	NTHI1592	-	nitroreductase
1394	 37.77	0	1482511..1484358	+	615	68249944	sppA	NTHI1593	-	protease IV
1395	 33.71	-1	1484396..1485193	-	265	68249945	licD	NTHI1594	-	phosphorylcholine transferase
1396	 34.19	-1	1485193..1485894	-	233	68249946	licC	NTHI1595	-	LicC
1397	 35.38	0	1485891..1486769	-	292	68249947	licB	NTHI1596	-	LicB
1398	 32.92	-1	1486769..1487728	-	319	68249948	licA	NTHI1597	-	LicA
1399	 40.49	0	1487816..1489828	-	670	68249949	mnmC	NTHI1599	-	5-methylaminomethyl-2-thiouridine methyltransferase
1400	 41.69	0	1489975..1491195	+	406	68249950	fabB	NTHI1600	-	3-oxoacyl-(acyl carrier protein) synthase I
1401	 36.74	0	1491258..1491521	-	87	68249951	grxA	NTHI1601	-	glutaredoxin 1
1402	 37.62	0	1491638..1492546	+	302	68249952	rimK	NTHI1602	-	ribosomal protein S6 modification protein
1403	 37.94	0	1492584..1493798	-	404	68249953	gltS	NTHI1603	-	Sodium/glutamate symport carrier protein
1404	 40.37	0	1493840..1496083	-	747	68249954	parC	NTHI1604	-	DNA topoisomerase IV subunit A
1405	 41.97	+1	1496150..1498048	-	632	68249955	parE	NTHI1605	-	DNA topoisomerase IV subunit B
1406	 41.24	0	1498122..1499057	-	311	68249956	htrB	NTHI1606	-	lipid A biosynthesis lauroyl acyltransferase
1407	 39.97	0	1499154..1500584	+	476	68249957	rfaE	NTHI1607	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
1408	 31.37	-1	1501255..1501611	-	118	68249958	-	NTHI1611	-	hypothetical protein
1409	 39.75	0	1501722..1502126	+	134	68249959	uupA2	NTHI1612	-	ABC transporter ATP-binding protein
1410	 39.75	0	1502123..1502683	+	186	68249960	uppB	NTHI1613	-	ABC transporter ATP-binding protein
1411	 38.12	0	1502711..1503400	-	229	68249961	-	NTHI1614	-	putative carbonic anhydrase
1412	 39.96	0	1503476..1504879	-	467	161761265	asnC	NTHI1615	-	asparaginyl-tRNA synthetase
1413	 40.08	0	1505106..1505579	+	157	68249963	ribH	NTHI1616	-	riboflavin synthase subunit beta
1414	 39.31	0	1505583..1506017	+	144	68249964	nusB	NTHI1617	-	transcription antitermination protein NusB
1415	 37.99	0	1506084..1507070	+	328	68249965	thiL	NTHI1618	-	thiamine-monophosphate kinase
1416	 37.20	0	1507067..1507558	+	163	68249966	pgpA	NTHI1619	-	phosphatidylglycerophosphatase A
1417	 35.56	0	1507558..1508187	+	209	68249967	-	NTHI1620	-	threonine efflux protein
1418	 41.82	0	1508204..1509016	+	270	68249968	dapB	NTHI1621	-	dihydrodipicolinate reductase
1419	 34.14	-1	1509011..1509259	-	82	68249969	-	NTHI1622	-	ferredoxin-like protein
1420	 34.82	0	1509305..1510045	+	246	68249970	-	NTHI1623	-	hypothetical protein
1421	 38.79	0	1510194..1511183	+	329	68249971	pheS	NTHI1624	-	phenylalanyl-tRNA synthetase subunit alpha
1422	 40.45	0	1511217..1513604	+	795	68249972	pheT	NTHI1625	-	phenylalanyl-tRNA synthetase subunit beta
1423	 38.14	0	1513606..1513896	+	96	68249973	himA	NTHI1626	-	integration host factor alpha-subunit
1424	 39.92	0	1513949..1514434	+	161	68249974	-	NTHI1627	-	lipoprotein
1425	 36.10	0	1514443..1515453	+	336	68249975	-	NTHI1628	-	hypothetical protein
1426	 34.21	-1	1515512..1515967	+	151	68249976	-	NTHI1629	-	putative 5'(3')-deoxyribonucleotidase
1427	 42.48	+1	1515951..1516661	+	236	68249977	-	NTHI1630	-	NAD-dependent deacetylase
1428	 38.32	0	1516710..1517732	-	340	68249978	-	NTHI1631	-	hypothetical protein
1429	 33.83	-1	1517927..1518127	+	66	68249979	ftsK2	NTHI1632	-	DNA translocase FtsK
1430	 39.72	0	1518124..1518969	+	281	68249980	-	NTHI1634	-	NAD-dependent deacetylase sirtuin 5
1431	 39.11	0	1518969..1519730	+	253	68249981	-	NTHI1635	-	hypothetical protein
1432	 32.51	-1	1519808..1520782	+	324	68249982	-	NTHI1636	-	hypothetical protein
1433	 38.10	0	1520859..1521026	+	55	68249983	-	NTHI1637	-	hypothetical protein
1434	 42.13	+1	1521196..1522911	+	571	68249984	-	NTHI1638	-	serine/threonine protein phosphatase family protein
1435	 37.21	0	1522931..1523368	+	145	68249985	-	NTHI1639	-	arylsulfatase A-like enzyme
1436	 37.76	0	1523450..1524262	+	270	68249986	-	NTHI1640	-	enzyme related to aldose 1-epimerase
1437	 40.44	0	1524530..1524937	+	135	68249987	infC	NTHI1641	-	translation initiation factor IF-3
1438	 38.38	0	1525148..1525345	+	65	161761264	rpmI	NTHI1642	-	50S ribosomal protein L35
1439	 42.94	+1	1525411..1525764	+	117	68249989	rplT	NTHI1643	-	50S ribosomal protein L20
1440	 35.70	0	1525877..1529512	+	1211	68249990	recB	NTHI1644	-	exodeoxyribonuclease V beta chain
1441	 38.85	0	1529512..1531434	+	640	68249991	recD	NTHI1646	-	exodeoxyribonuclease V alpha chain
1442	 33.56	-1	1531503..1531949	-	148	68249992	-	NTHI1647	-	hypothetical protein
1443	 37.04	0	1532046..1533851	+	601	68249993	lonB	NTHI1648	-	putative protease La
1444	 40.64	0	1534020..1534553	+	177	68249994	fabA	NTHI1649	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
1445	 30.18	-2	1534789..1535517	+	242	68249995	-	NTHI1650	-	hypothetical protein
1446	 40.58	0	1535514..1535651	+	45	68249996	-	NTHI1651	-	hypothetical protein
1447	 38.89	0	1535787..1536056	+	89	68249997	rpsO	NTHI1652	-	30S ribosomal protein S15
1448	 35.48	0	1536128..1536499	-	123	68249998	-	NTHI1653	-	putative transposase-like protein
1449	 46.15	+2	1536496..1536612	-	38	68249999	-	NTHI1654	-	hypothetical protein
1450	 37.57	0	1536828..1538267	-	479	68250000	dacB	NTHI1655	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
1451	 37.53	0	1538431..1538907	+	158	68250001	greA	NTHI1658	-	transcription elongation factor GreA
1452	 38.67	0	1538946..1539245	-	99	68250002	-	NTHI1659	-	RNA-binding protein
1453	 40.16	0	1539372..1540001	+	209	68250003	rrmJ	NTHI1660	-	23S rRNA methyltransferase J
1454	 41.61	0	1540092..1541999	+	635	68250004	ftsH	NTHI1662	-	cell division protein FtsH homolog 1
1455	 39.35	0	1542111..1542941	+	276	68250005	folP	NTHI1663	-	dihydropteroate synthase
1456	 41.03	0	1542974..1544311	+	445	68250006	mrsA	NTHI1664	-	phosphomannomutase
1457	 34.95	0	1544370..1544864	+	164	68250007	sixA	NTHI1666	-	phosphohistidine phosphatase SixA-like protein
1458	 36.81	0	1545066..1545641	+	191	68250008	-	NTHI1667	-	hypothetical protein
1459	 38.83	0	1545719..1547083	-	454	68250009	-	NTHI1668	-	hypothetical protein
1460	 41.13	0	1547310..1547450	+	46	68250010	-	NTHI1669	-	hypothetical protein
1461	 35.29	0	1547444..1547596	+	50	68250011	-	NTHI1671	-	hypothetical protein
1462	 32.33	-1	1547905..1548501	+	198	68250012	-	NTHI1673	-	RNA polymerase sigma factor
1463	 37.36	0	1548511..1548684	+	57	68250013	-	NTHI1674	-	hypothetical protein
1464	 37.54	0	1548779..1549681	-	300	68250014	-	NTHI1675	-	hypothetical protein
1465	 37.48	0	1549817..1550878	+	353	68250015	msaB	NTHI1677	-	bifunctional methionine sulfoxide reductase A/B protein
1466	 36.92	0	1550890..1551531	+	213	68250016	-	NTHI1678	-	hypothetical protein
1467	 36.94	0	1551576..1552046	+	156	68250017	-	NTHI1679	-	hypothetical protein
1468	 36.42	0	1552228..1552551	-	107	68250018	-	NTHI1680	-	dsDNA-mimic protein
1469	 39.89	0	1552618..1553349	-	243	68250019	moeB	NTHI1681	-	molybdopterin biosynthesis protein MoeB
1470	 40.08	0	1553353..1554567	-	404	68250020	moeA	NTHI1682	-	molybdopterin biosynthesis protein MoeA
1471	 36.83	0	1554705..1555361	+	218	68250021	folE	NTHI1683	-	GTP cyclohydrolase I
1472	 31.17	-2	1555365..1555688	+	107	68250022	-	NTHI1684	-	hypothetical protein
1473	 35.25	0	1555791..1556519	+	242	68250023	bioD	NTHI1685	-	dithiobiotin synthetase
1474	 36.63	0	1556608..1557486	-	292	68250024	metF	NTHI1686	-	5,10-methylenetetrahydrofolate reductase
1475	 42.19	+1	1557949..1558377	+	142	68250025	rplM	NTHI1687	-	50S ribosomal protein L13
1476	 44.78	+1	1558394..1558786	+	130	68250026	rpsI	NTHI1688	-	30S ribosomal protein S9
1477	 34.59	-1	1558967..1559605	+	212	68250027	sspA	NTHI1689	-	stringent starvation protein A
1478	 36.87	0	1559605..1560057	+	150	68250028	sspB	NTHI1690	-	ClpXP protease specificity-enhancing factor
1479	 39.14	0	1560093..1561970	-	625	68250029	dxs	NTHI1691	-	1-deoxy-D-xylulose-5-phosphate synthase
1480	 38.27	0	1562012..1562902	-	296	68250030	ispA	NTHI1692	-	geranyltranstransferase
1481	 38.04	0	1562902..1563156	-	84	68250031	xseB	NTHI1693	-	exodeoxyribonuclease VII small subunit
1482	 37.24	0	1563315..1564772	+	485	68250032	thiI	NTHI1694	-	thiamine biosynthesis protein ThiI
1483	 38.63	0	1564787..1565107	+	106	68250033	-	NTHI1695	-	hypothetical protein
1484	 35.83	0	1565101..1565820	+	239	68250034	truC	NTHI1696	-	tRNA pseudouridine synthase C
1485	 32.08	-1	1565813..1565971	+	52	68250035	-	NTHI1697	-	hypothetical protein
1486	 36.07	0	1566120..1566338	+	72	68250036	cspD	NTHI1698	-	cold shock-like protein CspD
1487	 38.16	0	1566477..1566953	-	158	68250037	-	NTHI1699	-	hypothetical protein
1488	 38.26	0	1567012..1567965	+	317	68250038	usg	NTHI1700	-	aspartate-semialdehyde dehydrogenase
1489	 42.38	+1	1568109..1568915	-	268	68250039	trpA	NTHI1701	-	tryptophan synthase subunit alpha
1490	 41.79	0	1568915..1570108	-	397	68250040	trpB	NTHI1702	-	tryptophan synthase subunit beta
1491	 41.50	0	1570125..1570883	-	252	68250041	-	NTHI1703	-	oxidoreductase
1492	 44.15	+1	1571063..1572097	+	344	68250042	purM	NTHI1704	-	phosphoribosylaminoimidazole synthetase
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.