IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.35   STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
91	 38.36	0	98441..99196	+	251	68248642	-	NTHI0107	-	hypothetical protein
92	 38.65	0	99196..99684	+	162	68248643	-	NTHI0108	-	hypothetical protein
93	 41.84	0	99930..100352	+	140	68248644	ssb2	NTHI0109	-	single-strand DNA-binding protein
94	 38.15	0	100379..100897	+	172	68248645	-	NTHI0110	-	putative lipoprotein
95	 35.48	0	101113..101670	-	185	68248646	-	NTHI0111	-	hypothetical protein
96	 38.86	0	101746..103806	+	686	68248647	topB2	NTHI0112	-	DNA topoisomerase III
97	 36.60	0	104691..105119	+	142	68248648	-	NTHI0113	-	hypothetical protein
98	 36.56	0	105131..105223	+	30	68248649	-	NTHI0114	-	hypothetical protein
99	 37.85	0	105234..105875	+	213	68248650	-	NTHI0115	-	hypothetical protein
100	 34.31	-1	105910..106317	+	135	68248651	-	NTHI0116	-	hypothetical protein
101	 33.76	-1	106418..106888	+	156	68248652	radC2	NTHI0117	-	putative DNA repair radC-like protein
102	 37.86	0	106981..107577	+	198	68248653	-	NTHI0118	-	hypothetical protein
103	 34.90	0	107635..108399	+	254	68248654	-	NTHI0119	-	hypothetical protein
104	 40.63	0	108498..109127	+	209	68248655	pilL	NTHI0120	-	putative lipoprotein
105	 39.68	0	109131..109871	+	246	68248656	-	NTHI0121	-	hypothetical protein
106	 41.24	0	109850..110608	+	252	68248657	-	NTHI0122	-	hypothetical protein
107	 39.25	0	110624..111130	+	168	68248658	-	NTHI0123	-	hypothetical protein
108	 41.82	0	111127..113376	+	749	68248659	-	NTHI0125	-	hypothetical protein
109	 39.16	0	113695..114381	+	228	68248660	-	NTHI0126	-	hypothetical protein
110	 39.60	0	114512..114862	+	116	68248661	-	NTHI0127	-	hypothetical protein
111	 37.81	0	115131..115532	+	133	68248662	-	NTHI0128	-	hypothetical protein
112	 41.94	+1	115552..115923	+	123	68248663	-	NTHI0129	-	hypothetical protein
113	 39.84	0	115935..116579	+	214	68248664	-	NTHI0130	-	hypothetical protein
114	 42.07	+1	116579..117448	+	289	68248665	-	NTHI0131	-	hypothetical protein
115	 41.40	0	117459..118859	+	466	68248666	-	NTHI0132	-	hypothetical protein
116	 41.18	0	118869..119276	+	135	68248667	-	NTHI0133	-	putative lipoprotein
117	 41.27	0	119292..122162	+	956	68248668	-	NTHI0134	-	hypothetical protein
118	 38.73	0	122170..122577	+	135	68248669	-	NTHI0135	-	hypothetical protein
119	 35.49	0	122587..122910	+	107	68248670	-	NTHI0136	-	hypothetical protein
120	 40.09	0	122919..124412	+	497	68248671	-	NTHI0137	-	hypothetical protein
121	 38.79	0	124468..124797	-	109	68248672	-	NTHI0139	-	hypothetical protein
122	 51.60	+2	124955..127960	-	1001	68248673	tnpA	NTHI0141	-	transposon Tn3 transposase
123	 52.14	+2	126925..127041	+	38	68248674	-	NTHI0140	-	hypothetical protein
124	 51.18	+2	128088..128681	+	197	162960936	tnpR	NTHI0142	-	transposon Tn3 resolvase
125	 49.01	+2	128729..129589	+	286	162960937	-	NTHI2055	-	beta-lactamase TEM precursor
126	 26.67	-2	129813..129992	+	59	68248676	-	NTHI0143	-	hypothetical protein
127	 37.01	0	130037..130444	-	135	68248677	-	NTHI0144	-	hypothetical protein
128	 39.48	0	130460..132460	-	666	68248678	-	NTHI0145	-	hypothetical protein
129	 40.23	0	132475..133416	-	313	68248679	-	NTHI0146	-	hypothetical protein
130	 39.64	0	133413..133856	-	147	68248680	-	NTHI0147	-	hypothetical protein
131	 37.62	0	134168..134587	+	139	68248681	-	NTHI0148	-	hypothetical protein
132	 36.32	0	134672..134905	+	77	68248682	-	NTHI0149	-	hypothetical protein
133	 37.75	0	134908..135156	+	82	68248683	-	NTHI0150	-	hypothetical protein
134	 33.33	-1	135160..135318	+	52	68248684	-	NTHI0151	-	hypothetical protein
135	 38.26	0	135449..136402	+	317	68248685	traC	NTHI0152	-	putative antirestriction protein
136	 37.66	0	136506..137267	+	253	68248686	-	NTHI0153	-	type I restriction enzyme M subunit
137	 35.63	0	137493..138059	+	188	68248687	-	NTHI0154	-	hypothetical protein
138	 45.60	+2	138099..138473	+	124	68248688	-	NTHI0155	-	hypothetical protein
139	 44.54	+1	138463..139140	+	225	68248689	-	NTHI0156	-	hypothetical protein
140	 39.48	0	139118..139735	+	205	68248690	-	NTHI0157	-	hypothetical protein
141	 36.83	0	139999..140598	-	199	68248691	-	NTHI0158	-	resolvase/integrase-like protein
142	 34.38	-1	140613..140804	-	63	68248692	-	NTHI0159	-	hypothetical protein
143	 32.55	-1	141273..141527	-	84	68248693	-	NTHI0160	-	hypothetical protein
144	 30.11	-2	142718..143431	+	237	68248694	-	NTHI0161	-	hypothetical protein
145	 30.94	-2	144151..145404	+	417	68248695	-	NTHI0162	-	hypothetical protein
146	 35.16	0	145547..147463	+	638	68248696	-	NTHI0163	-	hypothetical protein
147	 29.89	-2	147524..148366	+	280	68248697	-	NTHI0164	-	putative site-specific recombinase
148	 39.51	0	149016..150293	-	425	68248698	thrC	NTHI0165	-	threonine synthase
149	 38.41	0	150336..151280	-	314	68248699	thrB	NTHI0166	-	homoserine kinase
150	 40.60	0	151293..153740	-	815	68248700	thrA	NTHI0167	-	bifunctional aspartokinase I/homeserine dehydrogenase I
151	 38.66	0	154064..154777	+	237	68248701	-	NTHI0168	-	hypothetical protein
152	 44.50	+1	154817..155953	-	378	68248702	grk	NTHI0169	-	glycerate kinase
153	 43.49	+1	155962..157221	-	419	68248703	-	NTHI0171	-	hypothetical protein
154	 37.76	0	157343..158449	-	368	68248704	-	NTHI0172	-	hypothetical protein
155	 36.45	0	158651..158971	-	106	68248705	-	NTHI0173	-	hypothetical protein
156	 37.30	0	159322..160077	-	251	68248706	-	NTHI0175	-	hypothetical protein
157	 32.62	-1	160278..160559	+	93	68248707	-	NTHI0176	-	hypothetical protein
158	 39.74	0	160711..161709	+	332	68248708	hitA	NTHI0177	-	iron-utilization periplasmic protein hFbpA
159	 39.78	0	161827..163347	+	506	68248709	hitB	NTHI0179	-	iron(III)-transport system permease protein hFbpB
160	 38.64	0	163349..164404	+	351	68248710	hitC	NTHI0180	-	iron-utilization ATP-binding protein hFbpC
161	 39.94	0	164439..165119	-	226	68248711	-	NTHI0181	-	putative D-alanyl-D-alanine carboxypeptidase
162	 41.09	0	165121..166254	-	377	68248712	dapE	NTHI0182	-	succinyl-diaminopimelate desuccinylase
163	 37.39	0	166282..166626	-	114	68248713	-	NTHI0184	-	hypothetical protein
164	 37.87	0	166705..168600	-	631	68248714	htpG	NTHI0185	-	heat shock protein 90
165	 39.29	0	168812..169651	+	279	68248715	-	NTHI0186	-	NIF3-like protein
166	 44.29	+1	169825..172197	+	790	68248716	hsdM1	NTHI0188	-	putative type I restriction-modification system, methyltransferase subunit
167	 35.96	0	172380..173789	+	469	68248717	-	NTHI0190	-	transcription regulator
168	 36.69	0	173961..175211	+	416	68248718	hsdS1	NTHI0192	-	putative type I site-specific restriction-modification system, S subunit
169	 44.00	+1	175311..178337	+	1008	68248719	hsdR1	NTHI0193	-	putative type I site-specific restriction-modification system, R subunit
170	 43.19	+1	178562..179941	-	459	68248720	ffh	NTHI0194	-	Signal recognition particle protein
171	 38.05	0	180192..181484	+	430	68248721	corB	NTHI0196	-	putative Mg2+ and Co2+ transporter
172	 40.73	0	181505..182383	+	292	68248722	-	NTHI0197	-	hypothetical protein
173	 38.12	0	182385..182864	+	159	68248723	-	NTHI0198	-	hypothetical protein
174	 30.12	-2	182954..183295	-	113	68248724	-	NTHI0199	-	hypothetical protein
175	 39.84	0	183462..184751	+	429	68248725	serS	NTHI0200	-	seryl-tRNA synthetase
176	 37.14	0	185086..185715	+	209	68248726	gst	NTHI0201	-	glutathione S-transferase
177	 28.28	-2	185727..186023	-	98	68248727	-	NTHI0201_1	-	hypothetical protein
178	 32.89	-1	186076..188313	+	745	68248728	hemR	NTHI0202	-	hemin receptor
179	 37.59	0	195361..197496	-	711	68248729	-	NTHI0203	-	23S rRNA m(2)G2445 methyltransferase
180	 38.47	0	197889..198998	+	369	68248730	mltA	NTHI0205	-	murein transglycosylase A
181	 41.25	0	198998..199768	+	256	68248731	-	NTHI0206	-	hypothetical protein
182	 36.93	0	199946..200947	+	333	68248732	znuA	NTHI0208	-	high-affinity zinc transporter periplasmic component
183	 34.71	-1	200997..201503	-	168	68248733	-	NTHI0209	-	hypothetical protein
184	 39.29	0	201616..202974	-	452	68248734	mpl	NTHI0210	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
185	 38.05	0	203359..204546	-	395	68248735	metC	NTHI0211	-	cystathionine beta-lyase
186	 39.08	0	204677..205285	+	202	68248736	tsaA	NTHI0212	-	peroxiredoxin
187	 37.10	0	205386..205943	+	185	68248737	pgsA	NTHI0213	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
188	 38.61	0	206507..207037	-	176	68248738	ppa	NTHI0214	-	inorganic pyrophosphatase
189	 41.38	0	207271..208587	+	438	68248739	-	NTHI0215	-	hypothetical protein
190	 38.01	0	208810..209451	+	213	68248740	udk	NTHI0218	-	uridine kinase
38.35	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.