IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1246	 37.93	0	1351243..1353852	+	869	68249796	pepN	NTHI1428	-	aminopeptidase N
1247	 37.07	0	1353924..1354538	-	204	68249797	ribE	NTHI1429	-	riboflavin synthase subunit alpha
1248	 37.99	0	1354582..1355976	+	464	68249798	norM	NTHI1430	-	multidrug efflux protein
1249	 38.91	0	1355985..1356701	+	238	68249799	sfsA	NTHI1431	-	sugar fermentation stimulation protein A
1250	 39.56	0	1356901..1358088	+	395	68249800	tyrS	NTHI1432	-	tyrosyl-tRNA synthetase
1251	 42.83	+1	1358152..1359099	-	315	68249801	prsA	NTHI1433	-	ribose-phosphate pyrophosphokinase
1252	 37.42	0	1359101..1360054	-	317	68249802	ispE	NTHI1434	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
1253	 35.87	0	1360054..1360683	-	209	68249803	lolB	NTHI1435	-	outer membrane lipoprotein LolB
1254	 38.93	0	1360746..1361996	-	416	68249804	cca	NTHI1436	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
1255	 37.91	0	1362003..1362614	-	203	68249805	-	NTHI1437	-	hypothetical protein
1256	 39.35	0	1362680..1363942	-	420	68249806	-	NTHI1438	-	putative phosphate permease
1257	 37.44	0	1363967..1364647	-	226	68249807	-	NTHI1439	-	phosphate transport regulator
1258	 34.87	0	1364855..1365310	+	151	68249808	-	NTHI1440	-	hypothetical protein
1259	 43.06	+1	1365349..1365636	+	95	68249809	-	NTHI1441	-	hypothetical protein
1260	 35.64	0	1365666..1366619	+	317	68249810	-	NTHI1443	-	hypothetical protein
1261	 32.91	-1	1366609..1367325	+	238	68249811	-	NTHI1444	-	hypothetical protein
1262	 44.64	+1	1368433..1368600	+	55	68249812	-	NTHI1445	-	hypothetical protein
1263	 39.32	0	1368998..1369114	+	38	68249813	-	NTHI1446	-	hypothetical protein
1264	 40.00	0	1369564..1369728	-	54	68249814	-	NTHI1447	-	hypothetical protein
1265	 40.19	0	1369918..1371870	-	650	68249815	hmw2C	NTHI1448	-	HMW2C, putative glycosyltransferase involved in glycosylation of HMW1A and HMW2A
1266	 38.77	0	1372262..1373899	-	545	68249816	hmw2B	NTHI1449	-	HMW2B, OMP-85-like protein required for HMW1A and HMW2A secretion
1267	 40.22	0	1374050..1378678	-	1542	68249817	hmw2A	NTHI1450	-	HMW2A, high molecular weight adhesin 2
1268	 33.72	-1	1379103..1380149	+	348	68249818	-	NTHI1451	-	hypothetical protein
1269	 43.57	+1	1380382..1381758	+	458	68249819	radA	NTHI1453	-	DNA repair protein RadA
1270	 36.88	0	1381838..1382317	+	159	161761267	lrp	NTHI1454	-	leucine-responsive transcriptional regulator
1271	 36.89	0	1382319..1385075	+	918	68249821	ftsK	NTHI1455	-	DNA translocase FtsK
1272	 36.57	0	1385093..1385710	+	205	68249822	lolA	NTHI1456	-	outer-membrane lipoprotein carrier protein
1273	 41.76	0	1385771..1387111	+	446	68249823	-	NTHI1458	-	recombination factor protein RarA
1274	 29.83	-2	1387199..1388341	-	380	68249824	-	NTHI1459	-	hypothetical protein
1275	 33.25	-1	1388351..1389574	-	407	68249825	-	NTHI1460	-	modification methylase BepI-like
1276	 39.26	0	1389829..1391127	-	432	68249826	aroA	NTHI1462	-	3-phosphoshikimate 1-carboxyvinyltransferase
1277	 35.01	0	1391127..1391963	-	278	68249827	purU	NTHI1463	-	formyltetrahydrofolate deformylase
1278	 36.30	0	1392033..1392437	-	134	68249828	hns	NTHI1464	-	DNA-binding protein H-NS-like protein
1279	 38.33	0	1392841..1394400	+	519	68249829	-	NTHI1465	-	Na+/H+ antiporter
1280	 18.00	-2	1394468..1394617	+	49	68249830	-	NTHI1466	-	hypothetical protein
1281	 39.43	0	1394667..1396388	+	573	68249831	ilvI	NTHI1468	-	acetolactate synthase 3 catalytic subunit
1282	 37.20	0	1396388..1396879	+	163	68249832	ilvH	NTHI1469	-	acetolactate synthase 3 regulatory subunit
1283	 36.33	0	1397173..1398906	-	577	68249833	argS	NTHI1470	-	arginyl-tRNA synthetase
1284	 30.88	-2	1398986..1399555	+	189	68249834	-	NTHI1471	-	hypothetical protein
1285	 33.33	-1	1399634..1399855	+	73	68249835	-	NTHI1472	-	lipoprotein
1286	 42.80	+1	1399878..1400342	+	154	68249836	pcp	NTHI1473	-	Outer membrane lipoprotein PCP precursor
1287	 26.75	-2	1400526..1401497	-	323	68249837	lgtD	NTHI1474	-	UDP-GlcNAc--lipooligosaccharide N-acetylglucosamine glycosyltransferase
1288	 37.15	0	1402135..1403784	-	549	161761266	pgi	NTHI1475	-	glucose-6-phosphate isomerase
1289	 40.54	0	1403881..1404963	-	360	68249839	alr	NTHI1476	-	alanine racemase
1290	 39.60	0	1404973..1406487	-	504	68249840	dnaB	NTHI1477	-	replicative DNA helicase
1291	 40.01	0	1406521..1407957	-	478	68249841	pykA	NTHI1479	-	pyruvate kinase
1292	 36.75	0	1408494..1409753	+	419	68249842	-	NTHI1480	-	prophage CP4-57-like integrase
1293	 40.74	0	1410367..1410636	-	89	68249843	-	NTHI1482	-	hypothetical protein
1294	 38.60	0	1410741..1410911	-	56	68249844	-	NTHI1483	-	hypothetical protein
1295	 44.19	+1	1410901..1411434	-	177	68249845	-	NTHI1484	-	hypothetical protein
1296	 32.37	-1	1411506..1411922	-	138	68249846	-	NTHI1485	-	hypothetical protein
1297	 38.05	0	1411926..1412603	-	225	68249847	-	NTHI1486	-	hypothetical protein
1298	 46.48	+2	1412622..1413785	-	387	68249848	-	NTHI1487	-	modification methylase Bsp6I-like
1299	 40.02	0	1414391..1415287	-	298	68249849	rdgC	NTHI1488	-	recombination associated protein
1300	 47.96	+2	1415412..1416758	-	448	68249850	-	NTHI1489	-	hypothetical protein
1301	 43.22	+1	1416820..1417254	-	144	68249851	ssb3	NTHI1490	-	single-strand binding protein
1302	 40.31	0	1417254..1417898	-	214	68249852	-	NTHI1491	-	hypothetical protein
1303	 40.83	0	1417879..1418799	-	306	68249853	-	NTHI1492	-	recombinational DNA repair protein, RecE pathway
1304	 42.52	+1	1418812..1419105	-	97	68249854	-	NTHI1493	-	hypothetical protein
1305	 44.35	+1	1419102..1419446	-	114	68249855	-	NTHI1494	-	hypothetical protein
1306	 42.68	+1	1419460..1420197	-	245	68249856	-	NTHI1495	-	modification methylase DpnIIB-like
1307	 37.60	0	1420288..1421319	-	343	68249857	-	NTHI1497	-	hypothetical protein
1308	 35.71	0	1421309..1421560	-	83	68249858	-	NTHI1498	-	hypothetical protein
1309	 44.55	+1	1421679..1421990	-	103	68249859	-	NTHI1499	-	hypothetical protein
1310	 34.95	0	1422376..1422561	-	61	68249860	-	NTHI1501	-	hypothetical protein
1311	 40.12	0	1422722..1423870	-	382	68249861	-	NTHI1502	-	hypothetical protein
1312	 34.15	-1	1423881..1424741	-	286	68249862	-	NTHI1503	-	hypothetical protein
1313	 43.44	+1	1424804..1425169	-	121	68249863	-	NTHI1504	-	hypothetical protein
1314	 45.24	+1	1425171..1425758	-	195	68249864	-	NTHI1505	-	hypothetical protein
1315	 47.31	+2	1425914..1426099	+	61	68249865	-	NTHI1507	-	hypothetical protein
1316	 41.49	0	1426130..1426558	+	142	68249866	-	NTHI1508	-	hypothetical protein
1317	 39.02	0	1426559..1427068	-	169	68249867	-	NTHI1509	-	hypothetical protein
1318	 39.42	0	1427073..1427663	-	196	68249868	-	NTHI1510	-	hypothetical protein
1319	 42.30	+1	1427660..1428295	-	211	68249869	-	NTHI1511	-	hypothetical protein
1320	 42.53	+1	1428280..1429062	-	260	68249870	-	NTHI1512	-	hypothetical protein
1321	 41.45	0	1429064..1429297	-	77	68249871	-	NTHI1513	-	hypothetical protein
1322	 45.70	+2	1429343..1429795	-	150	68249872	-	NTHI1515	-	hypothetical protein
1323	 43.96	+1	1429839..1430045	-	68	68249873	-	NTHI1516	-	hypothetical protein
1324	 39.32	0	1430179..1431147	+	322	68249874	-	NTHI1517	-	hypothetical protein
1325	 45.26	+1	1431341..1431667	+	108	68249875	-	NTHI1518	-	hypothetical protein
1326	 41.48	0	1431654..1432058	+	134	68249876	-	NTHI1519	-	hypothetical protein
1327	 39.74	0	1432055..1432444	+	129	68249877	-	NTHI1520	-	hypothetical protein
1328	 53.25	+2	1432419..1432649	+	76	68249878	-	NTHI1521	-	hypothetical protein
1329	 36.98	0	1432658..1433617	+	319	68249879	-	NTHI1522	-	hypothetical protein
1330	 34.76	-1	1433596..1434015	+	139	68249880	-	NTHI1523	-	DNA modification methylase
1331	 33.78	-1	1434012..1434233	-	73	68249881	-	NTHI1525	-	hypothetical protein
1332	 37.67	0	1434291..1434659	+	122	68249882	-	NTHI1526	-	hypothetical protein
1333	 43.36	+1	1434673..1435989	+	438	68249883	-	NTHI1527	-	phage terminase large subunit
1334	 42.60	+1	1435991..1437307	+	438	68249884	-	NTHI1528	-	hypothetical protein
1335	 43.05	+1	1437237..1438049	+	270	68249885	-	NTHI1529	-	uncharacterized protein, homolog of phage Mu protein gp30
1336	 45.72	+2	1438055..1439128	+	357	68249886	-	NTHI1530	-	hypothetical protein
1337	 46.67	+2	1439142..1439561	+	139	68249887	-	NTHI1531	-	hypothetical protein
1338	 43.91	+1	1439569..1440570	+	333	68249888	-	NTHI1532	-	hypothetical protein
1339	 43.92	+1	1440573..1440761	+	62	68249889	-	NTHI1533	-	hypothetical protein
1340	 45.01	+1	1440765..1441115	+	116	68249890	-	NTHI1534	-	hypothetical protein
1341	 43.79	+1	1441108..1441566	+	152	68249891	-	NTHI1535	-	hypothetical protein
1342	 45.28	+1	1441566..1441925	+	119	68249892	-	NTHI1536	-	hypothetical protein
1343	 41.37	0	1441927..1442436	+	169	68249893	-	NTHI1537	-	hypothetical protein
1344	 43.95	+1	1442423..1443496	+	357	68249894	-	NTHI1538	-	hypothetical protein
1345	 45.54	+2	1443542..1443967	+	141	68249895	-	NTHI1539	-	hypothetical protein
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.