IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1147	 40.08	0	1250778..1251503	-	241	68249697	-	NTHI1316	-	ABC transporter ATP-binding protein
1148	 33.72	-1	1251507..1252025	-	172	68249698	-	NTHI1317	-	hypothetical protein
1149	 34.15	-1	1252006..1252614	-	202	68249699	-	NTHI1318	-	hypothetical protein
1150	 35.75	0	1252664..1253200	-	178	68249700	-	NTHI1319	-	hypothetical protein
1151	 40.49	0	1253289..1254644	+	451	68249701	pmbA	NTHI1320	-	hypothetical protein
1152	 38.15	0	1255019..1255558	+	179	68249702	hpt	NTHI1321	-	hypoxanthine-guanine phosphoribosyltransferase
1153	 44.22	+1	1255864..1257186	+	440	68249703	-	NTHI1323	-	Na+/dicarboxylate symporter
1154	 41.03	0	1257286..1257753	-	155	68249704	nrdG	NTHI1324	-	anaerobic ribonucleotide reductase-activating protein
1155	 38.01	0	1258001..1259731	-	576	68249705	cydC	NTHI1325	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1156	 39.47	0	1259731..1261491	-	586	68249706	cydD	NTHI1326	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1157	 43.36	+1	1261563..1262519	-	318	68249707	trxB	NTHI1327	-	thioredoxin reductase
1158	 37.76	0	1262593..1263450	-	285	68249708	-	NTHI1328	-	thioredoxin domain-containing protein
1159	 37.76	0	1263529..1264500	-	323	68249709	hemH	NTHI1329	-	ferrochelatase
1160	 42.69	+1	1264497..1264913	-	138	68249710	-	NTHI1330	-	hypothetical protein
1161	 39.40	0	1264927..1268010	-	1027	68249711	-	NTHI1331	-	hypothetical protein
1162	 40.93	0	1268385..1269464	+	359	68249712	ompP5	NTHI1332	-	Outer membrane protein P5
1163	 36.36	0	1269576..1269938	+	120	68249713	-	NTHI1333	-	glutaredoxin-related protein
1164	 34.51	-1	1270015..1271115	-	366	68249714	-	NTHI1334	-	histidinol-phosphate aminotransferase
1165	 38.38	0	1271203..1272291	-	362	68249715	serC	NTHI1335	-	phosphoserine aminotransferase
1166	 32.75	-1	1272482..1272826	+	114	68249716	-	NTHI1336	-	hypothetical protein
1167	 32.45	-1	1272866..1273432	-	188	68249717	-	NTHI1337	-	hypothetical protein
1168	 34.55	-1	1273432..1274418	-	328	68249718	-	NTHI1338	-	para-aminobenzoate synthase component I
1169	 35.91	0	1274460..1275041	+	193	68249719	trpG2	NTHI1339	-	para-aminobenzoate synthase component II
1170	 39.91	0	1275126..1276280	+	384	68249720	metK	NTHI1340	-	S-adenosylmethionine synthetase
1171	 35.27	0	1276575..1277090	+	171	68249721	sprT	NTHI1341	-	hypothetical protein
1172	 37.82	0	1277141..1277653	+	170	68249722	opa	NTHI1342	-	opacity protein
1173	 40.85	0	1277689..1277994	-	101	68249723	-	NTHI1344	-	hypothetical protein
1174	 37.28	0	1278201..1278884	-	227	68249724	artM	NTHI1345	-	arginine transporter permease subunit ArtM
1175	 39.49	0	1278884..1279549	-	221	68249725	artQ	NTHI1346	-	arginine transporter permease subunit ArtQ
1176	 34.58	-1	1279553..1280272	-	239	68249726	artI	NTHI1347	-	arginine-binding periplasmic protein
1177	 39.21	0	1280290..1281021	-	243	68249727	artP	NTHI1348	-	arginine transporter ATP-binding subunit
1178	 37.26	0	1281147..1281731	-	194	68249728	gmhA	NTHI1350	-	phosphoheptose isomerase
1179	 35.30	0	1281831..1282745	+	304	68249729	ligA	NTHI1352	-	DNA ligase
1180	 39.23	0	1282774..1283757	-	327	68249730	dppF	NTHI1353	-	dipeptide transporter ATP-binding subunit
1181	 42.70	+1	1283760..1284752	-	330	68249731	dppD	NTHI1354	-	dipeptide transporter ATP-binding subunit
1182	 41.22	0	1284762..1285649	-	295	68249732	dppC	NTHI1355	-	dipeptide transport system permease protein
1183	 40.52	0	1285664..1286665	-	333	68249733	dppB	NTHI1357	-	dipeptide transport system permease protein
1184	 39.88	0	1286755..1288938	-	727	68249734	uvrD	NTHI1359	-	DNA-dependent helicase II
1185	 33.65	-1	1289545..1290180	-	211	68249735	-	NTHI1360	-	organic radical activating protein
1186	 33.33	-1	1290181..1290606	-	141	68249736	-	NTHI1361	-	6-pyruvoyl tetrahydrobiopterin synthase
1187	 37.28	0	1290599..1291282	-	227	68249737	-	NTHI1362	-	PP-loop superfamily ATPase
1188	 37.50	0	1291438..1291581	+	47	68249738	-	NTHI1363	-	hypothetical protein
1189	 43.22	+1	1291632..1292663	-	343	68249739	ilvE	NTHI1364	-	branched-chain amino acid aminotransferase
1190	 34.68	-1	1293138..1294031	+	297	68249740	gcvA	NTHI1365	-	DNA-binding transcriptional activator GcvA
1191	 38.74	0	1294024..1295115	+	363	68249741	-	NTHI1366	-	putative RNA 2'-O-ribose methyltransferase
1192	 41.28	0	1295151..1296320	+	389	68249742	sucC	NTHI1367	-	succinyl-CoA synthetase beta chain
1193	 41.27	0	1296320..1297201	+	293	68249743	sucD	NTHI1368	-	succinyl-CoA synthetase alpha chain
1194	 39.42	0	1297322..1297945	+	207	68249744	-	NTHI1369	-	hypothetical protein
1195	 41.71	0	1297993..1299066	+	357	68249745	rluB	NTHI1370	-	ribosomal large subunit pseudouridine synthase B
1196	 39.40	0	1299077..1300048	+	323	68249746	cysB	NTHI1371	-	transcriptional regulator CysB
1197	 38.73	0	1300107..1301051	-	314	68249747	-	NTHI1372	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1198	 38.69	0	1301182..1301685	+	167	68249748	-	NTHI1373	-	hypothetical protein
1199	 40.82	0	1301763..1303898	-	711	68249749	pta	NTHI1374	-	phosphate acetyltransferase
1200	 40.05	0	1303966..1305171	-	401	68249750	ackA	NTHI1375	-	acetate kinase
1201	 36.94	0	1305388..1305831	+	147	68249751	-	NTHI1376	-	hypothetical protein
1202	 37.20	0	1305918..1306409	+	163	68249752	cvpA	NTHI1377	-	colicin V production protein
1203	 39.86	0	1306420..1307937	+	505	68249753	purF	NTHI1378	-	amidophosphoribosyltransferase
1204	 38.16	0	1308002..1308892	-	296	68249754	sulA	NTHI1379	-	cell division inhibitor SulA
1205	 35.31	0	1308892..1309347	-	151	68249755	argR	NTHI1380	-	arginine repressor
1206	 40.49	0	1309554..1310489	+	311	68249756	mdh	NTHI1381	-	malate dehydrogenase
1207	 39.56	0	1310576..1312084	-	502	68249757	lysS	NTHI1382	-	lysyl-tRNA synthetase
1208	 41.43	0	1312196..1313047	-	283	68249758	prfB	NTHI1383	-	peptide chain release factor 2
1209	 35.65	0	1313427..1314116	+	229	68249759	dsbC	NTHI1384	-	thiol-disulfide interchange protein
1210	 39.81	0	1314404..1316131	+	575	68249760	recJ	NTHI1385	-	single-stranded-DNA-specific exonuclease RecJ
1211	 34.46	-1	1316124..1316831	+	235	68249761	-	NTHI1387	-	hypothetical protein
1212	 41.41	0	1316828..1317520	+	230	68249762	mtnA	NTHI1389	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1213	 35.95	0	1317594..1320341	-	915	68249763	hup	NTHI1390	-	heme utilization protein
1214	 35.27	0	1320641..1322239	-	532	68249764	-	NTHI1391	-	putative L-lactate permease
1215	 37.91	0	1322643..1323647	-	334	68249765	fbp	NTHI1394	-	fructose-1,6-bisphosphatase
1216	 41.11	0	1323882..1324691	+	269	68249766	truA	NTHI1395	-	tRNA pseudouridine synthase A
1217	 38.15	0	1324784..1325800	-	338	68249767	sapZ	NTHI1396	-	hypothetical protein
1218	 35.93	0	1325812..1326621	-	269	68249768	sapF	NTHI1397	-	anti peptide resistance ABC transporter ATPase
1219	 36.38	0	1326621..1327670	-	349	68249769	sapD	NTHI1398	-	peptide ABC transporter ATP-binding protein
1220	 34.46	-1	1327674..1328561	-	295	68249770	sapC	NTHI1399	-	ABC transporter permease
1221	 35.20	0	1328551..1329516	-	321	68249771	sapB	NTHI1400	-	ABC transporter permease
1222	 35.40	0	1329516..1331210	-	564	68249772	sapA	NTHI1401	-	anti peptide resistance ABC transporter periplasmic protein
1223	 38.36	0	1331280..1332692	+	470	68249773	-	NTHI1402	-	ATPase
1224	 41.48	0	1332729..1335368	-	879	68249774	ppc	NTHI1403	-	phosphoenolpyruvate carboxylase
1225	 38.67	0	1335551..1336561	-	336	68249775	purR	NTHI1404	-	DNA-binding transcriptional repressor PurR
1226	 40.82	0	1336924..1337751	+	275	161761268	dapD	NTHI1406	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1227	 40.95	0	1337808..1339106	-	432	68249777	purA	NTHI1407	-	adenylosuccinate synthetase
1228	 37.98	0	1339235..1339600	-	121	68249778	-	NTHI1408	-	aspartokinase
1229	 43.75	+1	1340448..1340735	-	95	68249779	rplY	NTHI1410	-	50S ribosomal protein L25
1230	 34.09	-1	1340903..1341559	+	218	68249780	-	NTHI1412	-	uncharacterized membrane-associated protein
1231	 33.33	-1	1341606..1342022	-	138	68249781	-	NTHI1413	-	hypothetical protein
1232	 36.75	0	1342053..1342403	-	116	68249782	-	NTHI1414	-	YjgF family translation initiation inhibitor
1233	 34.87	0	1342515..1343231	+	238	68249783	-	NTHI1415	-	hypothetical protein
1234	 39.41	0	1343232..1343774	+	180	68249784	-	NTHI1416	-	hypothetical protein
1235	 33.99	-1	1343789..1344247	-	152	68249785	-	NTHI1417	-	HTH-type transcriptional regulator
1236	 36.11	0	1344286..1344969	+	227	68249786	-	NTHI1418	-	putative ABC-type Co2+ transport system, periplasmic component
1237	 40.29	0	1344982..1345470	+	162	68249787	-	NTHI1419	-	hypothetical protein
1238	 43.00	+1	1345470..1346090	+	206	68249788	cbiM	NTHI1420	-	cobalt transport protein CbiM
1239	 37.91	0	1346090..1346722	+	210	68249789	-	NTHI1421	-	cobalt ABC transporter permease
1240	 38.92	0	1346724..1347350	+	208	68249790	cbiO	NTHI1422	-	cobalt ABC transporter ATPase
1241	 40.05	0	1347457..1348647	-	396	68249791	aspC	NTHI1423	-	aromatic amino acid aminotransferase
1242	 38.75	0	1348787..1349875	-	362	68249792	purK	NTHI1424	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1243	 44.24	+1	1349945..1350439	-	164	68249793	purE	NTHI1425	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1244	 33.73	-1	1350610..1350858	+	82	68249794	hicA	NTHI1426	-	HicA
1245	 33.04	-1	1350855..1351199	+	114	68249795	hicB	NTHI1427	-	HicB
1246	 37.93	0	1351243..1353852	+	869	68249796	pepN	NTHI1428	-	aminopeptidase N
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.