IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1091	 31.78	-1	1187991..1188635	-	214	68249641	-	NTHI1247	-	ABC transporter
1092	 34.13	-1	1188668..1189168	-	166	68249642	-	NTHI1248	-	ABC transporter periplasmic protein
1093	 39.95	0	1189178..1189963	-	261	68249643	-	NTHI1249	-	ABC transporter permease
1094	 41.89	0	1189960..1190754	-	264	68249644	-	NTHI1250	-	ABC transporter ATPase
1095	 39.51	0	1191160..1191807	-	215	68249645	sodA	NTHI1251	-	superoxide dismutase
1096	 41.94	+1	1192056..1192694	+	212	68249646	ccmA	NTHI1253	-	cytochrome c biogenesis protein CcmA
1097	 41.59	0	1192699..1193364	+	221	68249647	ccmB	NTHI1254	-	heme exporter protein B
1098	 41.03	0	1193425..1194165	+	246	68249648	ccmC	NTHI1255	-	heme exporter protein C
1099	 36.76	0	1194208..1194411	+	67	68249649	ccmD	NTHI1256	-	heme exporter protein D
1100	 41.57	0	1194408..1194929	+	173	68249650	ccmE	NTHI1257	-	cytochrome c-type biogenesis protein CcmE
1101	 41.35	0	1194926..1196872	+	648	68249651	ccmF	NTHI1258	-	cytochrome c-type biogenesis protein CcmF
1102	 35.35	0	1197015..1197560	+	181	68249652	dsbE	NTHI1259	-	thiol-disulfide interchange protein
1103	 31.30	-1	1199060..1199551	+	163	68249653	-	NTHI1262	-	hypothetical protein
1104	 31.39	-1	1199553..1199861	+	102	68249654	-	NTHI1263	-	hypothetical protein
1105	 40.64	0	1199866..1201878	-	670	161761269	ligA	NTHI1265	-	NAD-dependent DNA ligase LigA
1106	 37.99	0	1201990..1202976	-	328	68249656	zipA	NTHI1266	-	cell division protein ZipA
1107	 35.78	0	1203129..1203947	+	272	68249657	cysZ	NTHI1268	-	putative sulfate transport protein CysZ
1108	 43.11	+1	1204046..1204996	+	316	68249658	cysK	NTHI1269	-	cysteine synthase
1109	 41.79	0	1206577..1207617	-	346	68249659	rfaF	NTHI1272	-	ADP-heptose--lipooligosaccharide heptosyltransferase II
1110	 35.05	0	1207693..1208856	-	387	68249660	xylR	NTHI1273	-	xylose operon regulatory protein
1111	 35.82	0	1208968..1210374	-	468	68249661	-	NTHI1274	-	Na(+)/H(+) antiporter
1112	 27.11	-2	1210376..1211548	-	390	68249662	aspC2	NTHI1275	-	putative aspartate aminotransferase
1113	 36.29	0	1211761..1213080	+	439	68249663	xylA	NTHI1276	-	xylose isomerase
1114	 37.04	0	1213083..1214618	+	511	68249664	xylB	NTHI1277	-	xylulose kinase
1115	 40.02	0	1214669..1215595	-	308	68249665	rfaD	NTHI1278	-	ADP-L-glycero-D-mannoheptose-6-epimerase
1116	 37.70	0	1215648..1216151	-	167	68249666	-	NTHI1279	-	thioredoxin-like protein
1117	 38.69	0	1216262..1216933	+	223	68249667	deoC	NTHI1280	-	deoxyribose-phosphate aldolase
1118	 43.33	+1	1216967..1218496	-	509	68249668	comM	NTHI1282	-	competence protein ComM
1119	 40.13	0	1218611..1219228	-	205	68249669	engB	NTHI1283	-	GTPase EngB
1120	 36.75	0	1219321..1220199	+	292	68249670	-	NTHI1285	-	D-xylose transport permease protein
1121	 41.24	0	1220239..1221237	-	332	68249671	oppF	NTHI1286	-	oligopeptide transport ATP-binding protein
1122	 43.11	+1	1221234..1222205	-	323	68249672	oppD	NTHI1287	-	oligopeptide transporter ATP-binding component
1123	 43.70	+1	1222215..1223150	-	311	68249673	oppC	NTHI1288	-	oligopeptide transport system permease protein
1124	 41.48	0	1223160..1224080	-	306	68249674	oppB	NTHI1289	-	oligopeptide transporter permease
1125	 40.22	0	1224161..1225786	-	541	68249675	oppA	NTHI1292	-	periplasmic oligopeptide-binding protein
1126	 38.57	0	1226081..1227034	+	317	68249676	talB	NTHI1293	-	transaldolase B
1127	 38.08	0	1228095..1229696	+	533	68249677	-	NTHI1295	-	carbon starvation protein, membrane protein
1128	 41.67	0	1229898..1230353	+	151	68249678	mraZ	NTHI1296	-	cell division protein MraZ
1129	 37.47	0	1230384..1231349	+	321	68249679	mraW	NTHI1297	-	S-adenosyl-methyltransferase MraW
1130	 34.88	0	1231352..1231675	+	107	68249680	ftsL	NTHI1298	-	cell division protein FtsL
1131	 38.95	0	1231688..1233520	+	610	68249681	ftsI	NTHI1299	-	peptidoglycan synthetase FtsI
1132	 38.99	0	1233530..1234996	+	488	68249682	murE	NTHI1300	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1133	 37.12	0	1235010..1236383	+	457	68249683	murF	NTHI1301	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
1134	 39.61	0	1236377..1237459	+	360	68249684	mraY	NTHI1302	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1135	 38.81	0	1237571..1238884	+	437	68249685	murD	NTHI1303	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1136	 34.94	0	1238907..1240091	+	394	68249686	ftsW	NTHI1304	-	cell division protein FtsW
1137	 38.83	0	1240103..1241158	+	351	68249687	murG	NTHI1305	-	N-acetylglucosaminyl transferase
1138	 40.97	0	1241296..1242723	+	475	68249688	murC	NTHI1307	-	UDP-N-acetylmuramate--L-alanine ligase
1139	 39.20	0	1242792..1243712	+	306	68249689	ddl	NTHI1308	-	D-alanine--D-alanine ligase
1140	 35.29	0	1243712..1244476	+	254	68249690	ftsQ	NTHI1309	-	cell division protein FtsQ
1141	 39.05	0	1244495..1245772	+	425	68249691	ftsA	NTHI1310	-	cell division protein FtsA
1142	 41.55	0	1245856..1247121	+	421	68249692	ftsZ	NTHI1311	-	cell division protein FtsZ
1143	 36.60	0	1247160..1248077	+	305	68249693	lpxC	NTHI1312	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1144	 33.94	-1	1248204..1249361	+	385	68249694	pheA	NTHI1313	-	P-protein
1145	 37.18	0	1249406..1250263	-	285	68249695	-	NTHI1314	-	hypothetical protein
1146	 35.76	0	1250281..1250775	-	164	68249696	ptsN	NTHI1315	-	nitrogen regulatory IIA protein
1147	 40.08	0	1250778..1251503	-	241	68249697	-	NTHI1316	-	ABC transporter ATP-binding protein
1148	 33.72	-1	1251507..1252025	-	172	68249698	-	NTHI1317	-	hypothetical protein
1149	 34.15	-1	1252006..1252614	-	202	68249699	-	NTHI1318	-	hypothetical protein
1150	 35.75	0	1252664..1253200	-	178	68249700	-	NTHI1319	-	hypothetical protein
1151	 40.49	0	1253289..1254644	+	451	68249701	pmbA	NTHI1320	-	hypothetical protein
1152	 38.15	0	1255019..1255558	+	179	68249702	hpt	NTHI1321	-	hypoxanthine-guanine phosphoribosyltransferase
1153	 44.22	+1	1255864..1257186	+	440	68249703	-	NTHI1323	-	Na+/dicarboxylate symporter
1154	 41.03	0	1257286..1257753	-	155	68249704	nrdG	NTHI1324	-	anaerobic ribonucleotide reductase-activating protein
1155	 38.01	0	1258001..1259731	-	576	68249705	cydC	NTHI1325	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1156	 39.47	0	1259731..1261491	-	586	68249706	cydD	NTHI1326	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1157	 43.36	+1	1261563..1262519	-	318	68249707	trxB	NTHI1327	-	thioredoxin reductase
1158	 37.76	0	1262593..1263450	-	285	68249708	-	NTHI1328	-	thioredoxin domain-containing protein
1159	 37.76	0	1263529..1264500	-	323	68249709	hemH	NTHI1329	-	ferrochelatase
1160	 42.69	+1	1264497..1264913	-	138	68249710	-	NTHI1330	-	hypothetical protein
1161	 39.40	0	1264927..1268010	-	1027	68249711	-	NTHI1331	-	hypothetical protein
1162	 40.93	0	1268385..1269464	+	359	68249712	ompP5	NTHI1332	-	Outer membrane protein P5
1163	 36.36	0	1269576..1269938	+	120	68249713	-	NTHI1333	-	glutaredoxin-related protein
1164	 34.51	-1	1270015..1271115	-	366	68249714	-	NTHI1334	-	histidinol-phosphate aminotransferase
1165	 38.38	0	1271203..1272291	-	362	68249715	serC	NTHI1335	-	phosphoserine aminotransferase
1166	 32.75	-1	1272482..1272826	+	114	68249716	-	NTHI1336	-	hypothetical protein
1167	 32.45	-1	1272866..1273432	-	188	68249717	-	NTHI1337	-	hypothetical protein
1168	 34.55	-1	1273432..1274418	-	328	68249718	-	NTHI1338	-	para-aminobenzoate synthase component I
1169	 35.91	0	1274460..1275041	+	193	68249719	trpG2	NTHI1339	-	para-aminobenzoate synthase component II
1170	 39.91	0	1275126..1276280	+	384	68249720	metK	NTHI1340	-	S-adenosylmethionine synthetase
1171	 35.27	0	1276575..1277090	+	171	68249721	sprT	NTHI1341	-	hypothetical protein
1172	 37.82	0	1277141..1277653	+	170	68249722	opa	NTHI1342	-	opacity protein
1173	 40.85	0	1277689..1277994	-	101	68249723	-	NTHI1344	-	hypothetical protein
1174	 37.28	0	1278201..1278884	-	227	68249724	artM	NTHI1345	-	arginine transporter permease subunit ArtM
1175	 39.49	0	1278884..1279549	-	221	68249725	artQ	NTHI1346	-	arginine transporter permease subunit ArtQ
1176	 34.58	-1	1279553..1280272	-	239	68249726	artI	NTHI1347	-	arginine-binding periplasmic protein
1177	 39.21	0	1280290..1281021	-	243	68249727	artP	NTHI1348	-	arginine transporter ATP-binding subunit
1178	 37.26	0	1281147..1281731	-	194	68249728	gmhA	NTHI1350	-	phosphoheptose isomerase
1179	 35.30	0	1281831..1282745	+	304	68249729	ligA	NTHI1352	-	DNA ligase
1180	 39.23	0	1282774..1283757	-	327	68249730	dppF	NTHI1353	-	dipeptide transporter ATP-binding subunit
1181	 42.70	+1	1283760..1284752	-	330	68249731	dppD	NTHI1354	-	dipeptide transporter ATP-binding subunit
1182	 41.22	0	1284762..1285649	-	295	68249732	dppC	NTHI1355	-	dipeptide transport system permease protein
1183	 40.52	0	1285664..1286665	-	333	68249733	dppB	NTHI1357	-	dipeptide transport system permease protein
1184	 39.88	0	1286755..1288938	-	727	68249734	uvrD	NTHI1359	-	DNA-dependent helicase II
1185	 33.65	-1	1289545..1290180	-	211	68249735	-	NTHI1360	-	organic radical activating protein
1186	 33.33	-1	1290181..1290606	-	141	68249736	-	NTHI1361	-	6-pyruvoyl tetrahydrobiopterin synthase
1187	 37.28	0	1290599..1291282	-	227	68249737	-	NTHI1362	-	PP-loop superfamily ATPase
1188	 37.50	0	1291438..1291581	+	47	68249738	-	NTHI1363	-	hypothetical protein
1189	 43.22	+1	1291632..1292663	-	343	68249739	ilvE	NTHI1364	-	branched-chain amino acid aminotransferase
1190	 34.68	-1	1293138..1294031	+	297	68249740	gcvA	NTHI1365	-	DNA-binding transcriptional activator GcvA
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.