IslandPathversion 1.0

IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.35 STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1008	 46.37	+2	1087895..1088362	+	155	68249558	accB	NTHI1144	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
1009	 40.46	0	1088539..1089885	+	448	68249559	accC	NTHI1145	-	acetyl-CoA carboxylase biotin carboxylase subunit
1010	 35.27	0	1090090..1090347	+	85	68249560	-	NTHI1146	-	hypothetical protein
1011	 38.56	0	1090344..1091798	+	484	68249561	panF	NTHI1147	-	sodium/panthothenate symporter
1012	 37.46	0	1091919..1092791	+	290	68249562	-	NTHI1148	-	hypothetical protein
1013	 40.43	0	1092826..1093713	+	295	68249563	prmA	NTHI1149	-	ribosomal protein L11 methyltransferase
1014	 40.98	0	1093860..1094840	+	326	68249564	dusB	NTHI1151	-	tRNA-dihydrouridine synthase B
1015	 37.67	0	1094834..1095133	+	99	68249565	fis	NTHI1152	-	DNA-binding protein Fis
1016	 36.21	0	1095234..1095719	-	161	68249566	smpB	NTHI1153	-	SsrA-binding protein
1017	 40.99	0	1095958..1096923	-	321	68249567	pfkA	NTHI1154	-	6-phosphofructokinase
1018	 34.19	-1	1097019..1097600	-	193	68249568	-	NTHI1155	-	hypothetical protein
1019	 35.33	0	1097593..1098444	-	283	68249569	-	NTHI1156	-	hypothetical protein
1020	 39.66	0	1098422..1099543	-	373	68249570	smf	NTHI1157	-	hypothetical protein
1021	 41.80	0	1100087..1101634	+	515	68249571	leuA	NTHI1160	-	2-isopropylmalate synthase
1022	 42.15	+1	1101797..1102873	+	358	68249572	leuB	NTHI1161	-	3-isopropylmalate dehydrogenase
1023	 42.48	+1	1103050..1104459	+	469	68249573	leuC	NTHI1162	-	isopropylmalate isomerase large subunit
1024	 40.30	0	1104484..1105086	+	200	68249574	leuD	NTHI1163	-	isopropylmalate isomerase small subunit
1025	 37.03	0	1105200..1110584	-	1794	68249575	iga1	NTHI1164	-	IgA-specific serine endopeptidase
1026	 40.00	0	1110811..1111890	-	359	68249576	recF	NTHI1165	-	recombination protein F
1027	 39.60	0	1111892..1112992	-	366	68249577	dnaN	NTHI1166	-	DNA polymerase III subunit beta
1028	 39.63	0	1113185..1114549	-	454	68249578	dnaA	NTHI1167	-	chromosomal replication initiation protein
1029	 35.52	0	1114736..1117474	-	912	68249579	tbp1	NTHI1168	-	transferrin-binding protein 1
1030	 36.34	0	1117519..1119411	-	630	68249580	tbp2	NTHI1169	-	transferrin-binding protein 2 precursor
1031	 33.61	-1	1119508..1120968	+	486	68249581	-	NTHI1171	-	hypothetical protein
1032	 41.48	0	1121144..1121278	+	44	68249582	rpmH	NTHI1172	-	50S ribosomal protein L34
1033	 37.22	0	1121291..1121650	+	119	68249583	rnpA	NTHI1173	-	ribonuclease P
1034	 36.40	0	1121614..1121874	+	86	68249584	-	NTHI1174	-	hypothetical protein
1035	 35.79	0	1121874..1123499	+	541	68249585	yidC	NTHI1175	-	putative inner membrane protein translocase component YidC
1036	 39.22	0	1124370..1125728	+	452	68249586	trmE	NTHI1178	-	tRNA modification GTPase TrmE
1037	 34.67	-1	1125917..1127785	+	622	68249587	ppiD	NTHI1179	-	peptidyl-prolyl cis-trans isomerase D
1038	 31.15	-2	1127873..1129432	+	519	68249588	-	NTHI1180	-	PE--lipooligosaccharide phosphorylethanolamine transferase
1039	 35.27	0	1129502..1130017	+	171	68249589	lspA	NTHI1181	-	lipoprotein signal peptidase
1040	 40.74	0	1130014..1130958	+	314	68249590	ispH	NTHI1182	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1041	 37.36	0	1131127..1131474	+	115	68249591	-	NTHI1183	-	hypothetical protein
1042	 37.44	0	1131721..1132719	+	332	68249592	tbpA	NTHI1185	-	thiamine-binding periplasmic protein
1043	 37.04	0	1132724..1134340	+	538	68249593	thiP	NTHI1186	-	thiamine transporter membrane protein
1044	 39.45	0	1134318..1134971	+	217	68249594	thiQ	NTHI1187	-	thiamine transport ATP-binding protein
1045	 41.62	0	1135084..1136085	+	333	68249595	bioB	NTHI1188	-	biotin synthase
1046	 42.89	+1	1136210..1138207	-	665	68249596	tktA	NTHI1189	-	transketolase
1047	 38.41	0	1138588..1139532	+	314	68249597	serB	NTHI1192	-	phosphoserine phosphatase
1048	 34.76	-1	1139550..1140041	+	163	68249598	-	NTHI1194	-	nucleotide-binding protein
1049	 38.08	0	1140337..1141284	+	315	68249599	corA	NTHI1195	-	magnesium/nickel/cobalt transporter CorA
1050	 33.15	-1	1141275..1141829	+	184	68249600	-	NTHI1196	-	integral membrane protein
1051	 35.37	0	1142009..1142893	-	294	68249601	-	NTHI1197	-	hypothetical protein
1052	 33.90	-1	1143050..1143577	-	175	68249602	-	NTHI1198	-	hypothetical protein
1053	 36.74	0	1143707..1144909	+	400	68249603	-	NTHI1199	-	ATPase
1054	 32.44	-1	1145099..1146448	-	449	68249604	-	NTHI1201	-	hypothetical protein
1055	 40.92	0	1146916..1147416	-	166	68249605	-	NTHI1203	-	ferredoxin
1056	 33.01	-1	1147416..1148027	-	203	68249606	-	NTHI1204	-	twin-argninine leader-binding protein DmsD
1057	 36.43	0	1148139..1148978	-	279	68249607	dmsC	NTHI1205	-	anaerobic dimethyl sulfoxide reductase chain C
1058	 40.13	0	1148980..1149597	-	205	68249608	dmsB	NTHI1206	-	anaerobic dimethyl sulfoxide reductase chain B
1059	 38.95	0	1149608..1152028	-	806	68249609	dmsA	NTHI1207	-	anaerobic dimethyl sulfoxide reductase chain A precursor
1060	 39.91	0	1152281..1153390	+	369	68249610	-	NTHI1208	-	hypothetical protein
1061	 32.65	-1	1153434..1153727	+	97	68249611	-	NTHI1209	-	mercuric transporter MerT
1062	 35.13	0	1153736..1154014	+	92	68249612	-	NTHI1211	-	copper chaperone MerP-like protein
1063	 40.05	0	1154139..1155983	-	614	68249613	-	NTHI1212	-	ABC transporter ATP-binding protein
1064	 35.01	0	1156062..1156958	-	298	68249614	-	NTHI1213	-	putative transcriptional regulator
1065	 42.98	+1	1157070..1157411	+	113	68249615	-	NTHI1214	-	hypothetical protein
1066	 34.84	0	1157522..1158118	-	198	68249616	-	NTHI1215	-	hypothetical protein
1067	 38.41	0	1158124..1160289	-	721	68249617	res	NTHI1216	-	putative type III restriction-modification system HindVIP enzyme res
1068	 43.10	+1	1162596..1163189	-	197	68249618	rnhB	NTHI1219	-	ribonuclease HII
1069	 39.98	0	1163182..1164354	-	390	68249619	lpxB	NTHI1220	-	lipid-A-disaccharide synthase
1070	 41.32	0	1164421..1165209	-	262	68249620	lpxA	NTHI1222	-	UDP-N-acetylglucosamine acyltransferase
1071	 41.16	0	1165223..1165669	-	148	68249621	fabZ	NTHI1223	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
1072	 35.63	0	1165745..1167352	-	535	68249622	-	NTHI1224	-	PE--lipooligosaccharide phosphorylethanolamine transferase
1073	 41.18	0	1167445..1168158	+	237	68249623	pyrH	NTHI1225	-	uridylate kinase
1074	 36.54	0	1168397..1169362	-	321	68249624	nrfD	NTHI1226	-	NrfD, formate-dependent nitrite reductase, membrane component
1075	 41.74	0	1169359..1170036	-	225	68249625	nrfC	NTHI1227	-	NrfC, Fe-S-cluster-containing hydrogenase component 1
1076	 37.72	0	1170033..1170716	-	227	68249626	nrfB	NTHI1229	-	cytochrome c-type protein NrfB
1077	 40.01	0	1170760..1172376	-	538	68249627	nrfA	NTHI1230	-	cytochrome c nitrite reductase
1078	 42.25	+1	1172538..1176374	-	1278	161761270	hrpA	NTHI1231	-	ATP-dependent RNA helicase HrpA
1079	 37.87	0	1176443..1176817	-	124	68249629	-	NTHI1232	-	putative small membrane protein
1080	 37.75	0	1176818..1177270	-	150	68249630	-	NTHI1233	-	hypothetical protein
1081	 36.06	0	1177536..1178672	-	378	68249631	cyoB	NTHI1235	-	putative cytochrome oxidase subunit II
1082	 36.72	0	1178687..1180252	-	521	68249632	cyoA	NTHI1236	-	cytochrome oxidase subunit I
1083	 40.05	0	1180905..1182542	+	545	68249633	pyrG	NTHI1238	-	CTP synthetase
1084	 35.83	0	1182687..1183367	-	226	68249634	pnuC	NTHI1240	-	nicotinamide riboside transporter
1085	 37.86	0	1183549..1184322	-	257	68249635	-	NTHI1241	-	putative amino-acid ABC transporter ATP-binding protein
1086	 35.69	0	1184326..1185003	-	225	68249636	-	NTHI1242	-	amino-acid ABC transporter permease protein
1087	 35.92	0	1185026..1185799	-	257	68249637	-	NTHI1243	-	amino-acid ABC transporter binding protein
1088	 39.53	0	1186100..1187374	-	424	68249638	murA	NTHI1244	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1089	 34.11	-1	1187385..1187642	-	85	68249639	-	NTHI1245	-	BolA family transcriptional regulator
1090	 34.28	-1	1187663..1187980	-	105	68249640	-	NTHI1246	-	NTP binding protein, contains STAS domain
1091	 31.78	-1	1187991..1188635	-	214	68249641	-	NTHI1247	-	ABC transporter
1092	 34.13	-1	1188668..1189168	-	166	68249642	-	NTHI1248	-	ABC transporter periplasmic protein
1093	 39.95	0	1189178..1189963	-	261	68249643	-	NTHI1249	-	ABC transporter permease
1094	 41.89	0	1189960..1190754	-	264	68249644	-	NTHI1250	-	ABC transporter ATPase
1095	 39.51	0	1191160..1191807	-	215	68249645	sodA	NTHI1251	-	superoxide dismutase
1096	 41.94	+1	1192056..1192694	+	212	68249646	ccmA	NTHI1253	-	cytochrome c biogenesis protein CcmA
1097	 41.59	0	1192699..1193364	+	221	68249647	ccmB	NTHI1254	-	heme exporter protein B
1098	 41.03	0	1193425..1194165	+	246	68249648	ccmC	NTHI1255	-	heme exporter protein C
1099	 36.76	0	1194208..1194411	+	67	68249649	ccmD	NTHI1256	-	heme exporter protein D
1100	 41.57	0	1194408..1194929	+	173	68249650	ccmE	NTHI1257	-	cytochrome c-type biogenesis protein CcmE
1101	 41.35	0	1194926..1196872	+	648	68249651	ccmF	NTHI1258	-	cytochrome c-type biogenesis protein CcmF
1102	 35.35	0	1197015..1197560	+	181	68249652	dsbE	NTHI1259	-	thiol-disulfide interchange protein
1103	 31.30	-1	1199060..1199551	+	163	68249653	-	NTHI1262	-	hypothetical protein
1104	 31.39	-1	1199553..1199861	+	102	68249654	-	NTHI1263	-	hypothetical protein
1105	 40.64	0	1199866..1201878	-	670	161761269	ligA	NTHI1265	-	NAD-dependent DNA ligase LigA
1106	 37.99	0	1201990..1202976	-	328	68249656	zipA	NTHI1266	-	cell division protein ZipA
1107	 35.78	0	1203129..1203947	+	272	68249657	cysZ	NTHI1268	-	putative sulfate transport protein CysZ
38.35	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.