IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.37   STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
49	 50.22	0	53196..53426	-	76	83642962	-	HCH_00050	-	hypothetical protein
50	 61.38	+1	53532..54269	+	245	83642963	-	HCH_00051	-	hypothetical protein
51	 57.64	0	54262..54870	+	202	83642964	-	HCH_00052	-	hypothetical protein
52	 61.98	+1	54965..56053	+	362	83642965	-	HCH_00053	-	uncharacterized protein required for cytochrome oxidase assembly
53	 61.00	+1	56050..56949	+	299	83642966	cyoE	HCH_00054	-	protoheme IX farnesyltransferase
54	 60.19	+1	57068..58333	+	421	83642967	-	HCH_00055	-	Beta-lactamase class C and other penicillin binding protein
55	 51.54	0	58363..58719	-	118	83642968	-	HCH_00056	-	hypothetical protein
56	 52.50	0	59022..59261	+	79	83642969	-	HCH_00057	-	hypothetical protein
57	 58.86	0	59279..60367	-	362	83642970	-	HCH_00058	-	strictosidine synthase family protein
58	 59.32	+1	60409..62178	-	589	83642971	-	HCH_00059	-	hypothetical protein
59	 59.54	+1	62641..63342	-	233	83642972	-	HCH_00060	-	hypothetical protein
60	 58.58	0	63440..64576	+	378	83642973	-	HCH_00061	-	deacylase
61	 60.03	+1	64758..66233	+	491	83642974	phrB1	HCH_00062	-	deoxyribodipyrimidine photolyase
62	 54.52	0	66301..66687	-	128	83642975	-	HCH_00063	-	hypothetical protein
63	 59.64	+1	66791..67459	-	222	83642976	-	HCH_00064	-	response regulator
64	 60.23	+1	67500..68882	-	460	83642977	-	HCH_00065	-	Signal transduction histidine kinase
65	 58.11	0	69120..70463	+	447	83642978	-	HCH_00067	-	hypothetical protein
66	 60.59	+1	70545..71153	-	202	83642979	-	HCH_00068	-	putative threonine efflux protein
67	 61.50	+1	71280..72266	+	328	83642980	-	HCH_00069	-	transcriptional regulator
68	 56.55	0	72392..73360	+	322	83642981	-	HCH_00070	-	glutathione S-transferase
69	 56.41	0	73616..74863	+	415	83642982	-	HCH_00071	-	ABC-type sugar transport system, periplasmic component
70	 63.46	+1	74875..75903	-	342	83642983	hypE	HCH_00072	-	hydrogenase expression/formation protein HypE
71	 62.08	+1	75904..77016	-	370	83642984	hypD	HCH_00073	-	hydrogenase expression/formation protein HypD
72	 58.33	0	77016..77279	-	87	83642985	hypC	HCH_00074	-	hydrogenase assembly chaperone HypC/HupF
73	 62.93	+1	77270..79627	-	785	83642986	hypF	HCH_00075	-	[NiFe] hydrogenase maturation protein HypF
74	 59.20	+1	79594..80343	-	249	83642987	hypB	HCH_00076	-	hydrogenase accessory protein HypB
75	 55.30	0	80470..81243	-	257	83642988	-	HCH_00077	-	FOG EAL domain-containing protein
76	 63.45	+1	81307..82176	-	289	83642989	-	HCH_00078	-	hypothetical protein
77	 55.93	0	82179..82793	-	204	83642990	-	HCH_00079	-	hypothetical protein
78	 63.59	+1	82805..84007	-	400	83642991	-	HCH_00080	-	glycosyltransferase
79	 56.76	0	83979..84392	-	137	83642992	-	HCH_00081	-	hypothetical protein
80	 55.28	0	84397..85248	-	283	83642993	-	HCH_00082	-	hypothetical protein
81	 61.18	+1	85249..86505	-	418	83642994	-	HCH_00083	-	glycosyltransferase
82	 58.12	0	86696..88321	+	541	83642995	-	HCH_00084	-	methyl-accepting chemotaxis protein
83	 60.07	+1	88420..90813	-	797	83642996	-	HCH_00085	-	secreted endoclucanase precursor
84	 60.89	+1	90925..93159	-	744	83642997	-	HCH_00086	-	cellobiohydrolase A (1,4-beta-cellobiosidase A)
85	 58.22	0	93322..94920	-	532	83642998	-	HCH_00087	-	endoglucanase
86	 41.27	-2	95007..95195	+	62	83642999	-	HCH_00088	-	hypothetical protein
87	 57.40	0	95629..97830	+	733	83643000	-	HCH_00089	-	von Willebrand factor type A (vWA) domain-containing protein
88	 63.30	+1	97827..98450	+	207	83643001	-	HCH_00090	-	sortase (surface protein transpeptidase)
89	 61.77	+1	99187..100575	+	462	83643002	-	HCH_00091	-	group II intron-encoding maturase
90	 37.29	-2	100700..100876	-	58	83643003	-	HCH_00092	-	hypothetical protein
91	 55.53	0	101058..102665	+	535	83643004	-	HCH_00093	-	autotransporter beta-domain-containing protein
92	 54.93	0	102679..107022	+	1447	83643005	-	HCH_00094	-	cell wall surface anchor family protein
93	 54.84	0	107075..107818	-	247	83643006	-	HCH_00095	-	hypothetical protein
94	 55.73	0	107805..108737	-	310	83643007	-	HCH_00096	-	hypothetical protein
95	 54.82	0	108803..109165	-	120	83643008	-	HCH_00097	-	hypothetical protein
96	 51.04	0	109391..110017	-	208	83643009	udk	HCH_00098	-	uridine kinase
97	 38.56	-2	110218..110370	+	50	83643010	-	HCH_00099	-	hypothetical protein
98	 49.63	0	111055..111858	+	267	83643011	-	HCH_00100	-	sulfurtransferase
99	 58.16	0	111986..113302	+	438	83643012	-	HCH_00101	-	sulfite oxidase and related enzyme
100	 57.88	0	113458..113787	+	109	83643013	-	HCH_00102	-	hypothetical protein
101	 55.25	0	113800..114123	-	107	83643014	hypA	HCH_00103	-	hydrogenase formation/expression protein HypA
102	 55.42	0	114134..114613	-	159	83643015	-	HCH_00104	-	Ni,Fe-hydrogenase maturation factor
103	 57.03	0	114632..116104	-	490	83643016	-	HCH_00105	-	coenzyme F420-reducing hydrogenase, alpha subunit
104	 56.56	0	116116..116679	-	187	83643017	-	HCH_00106	-	coenzyme F420-reducing hydrogenase, gamma subunit
105	 59.16	+1	116676..117434	-	252	83643018	-	HCH_00107	-	hydrogen dehydrogenase
106	 58.06	0	117431..119266	-	611	83643019	nuoF	HCH_00108	-	NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
107	 59.14	+1	119413..120090	-	225	83643020	-	HCH_00109	-	Sir2 family NAD-dependent protein deacetylase
108	 53.22	0	120226..120768	-	180	83643021	-	HCH_00110	-	glutathione peroxidase
109	 54.47	0	120965..121735	+	256	83643022	-	HCH_00111	-	hypothetical protein
110	 51.65	0	122011..123069	+	352	83643023	-	HCH_00112	-	hypothetical protein
111	 56.27	0	123170..124054	+	294	83643024	-	HCH_00113	-	HAMP domain-containing protein
112	 55.75	0	124474..125838	+	454	83643025	-	HCH_00114	-	Serine/threonine protein kinase
113	 56.54	0	125896..127278	-	460	83643026	-	HCH_00115	-	ABC-type phosphate transport system, periplasmic component
114	 58.83	0	127547..128299	+	250	83643027	-	HCH_00116	-	hypothetical protein
115	 56.22	0	128393..129397	+	334	83643028	-	HCH_00117	-	serine/threonine protein kinase
116	 58.18	0	129634..132873	+	1079	83643029	-	HCH_00118	-	hypothetical protein
117	 59.00	0	132877..133737	-	286	83643030	-	HCH_00119	-	dienelactone hydrolase
118	 58.53	0	133918..135834	+	638	83643031	-	HCH_00120	-	phosphatase
119	 46.08	-1	135876..135977	+	33	83643032	-	HCH_00122	-	hypothetical protein
120	 56.04	0	136005..136973	+	322	83643033	-	HCH_00123	-	Fatty acid desaturase
121	 58.09	0	137248..138867	+	539	83643034	-	HCH_00124	-	endonuclease I
122	 53.82	0	139045..139737	+	230	83643035	-	HCH_00125	-	hypothetical protein
123	 61.11	+1	139758..140549	-	263	83643036	-	HCH_00126	-	short-chain alcohol dehydrogenase-like protein
124	 57.05	0	140589..141212	-	207	83643037	-	HCH_00127	-	putative threonine efflux protein
125	 51.28	0	141349..142089	+	246	83643038	-	HCH_00128	-	hypothetical protein
126	 59.36	+1	142086..142646	-	186	83643039	-	HCH_00129	-	RNA:NAD 2'-phosphotransferase
127	 58.44	0	142666..143394	-	242	83643040	pdxJ	HCH_00130	-	pyridoxal phosphate biosynthetic protein PdxJ
128	 53.38	0	143564..145324	+	586	83643041	-	HCH_00132	-	hypothetical protein
129	 53.94	0	145345..147120	+	591	83643042	-	HCH_00133	-	hypothetical protein
130	 52.01	0	147260..149026	+	588	83643043	-	HCH_00134	-	hypothetical protein
131	 56.36	0	149237..150109	-	290	83643044	-	HCH_00135	-	hypothetical protein
132	 35.00	-2	150238..150357	+	39	83643045	-	HCH_00136	-	hypothetical protein
133	 57.64	0	150709..152625	+	638	83643046	thiC	HCH_00137	-	thiamine biosynthesis protein ThiC
134	 62.54	+1	152630..153694	+	354	83643047	thiO	HCH_00138	-	thiamine biosynthesis protein ThiO
135	 61.43	+1	153684..153893	+	69	83643048	thiS	HCH_00139	-	thiamine biosynthesis protein ThiS
136	 60.58	+1	153941..154729	+	262	83643049	thiG	HCH_00140	-	thiazole synthase
137	 60.11	+1	154722..156185	+	487	83643050	thiE	HCH_00141	-	thiamine monophosphate synthase
138	 42.59	-1	156341..156448	-	35	83643051	-	HCH_00142	-	hypothetical protein
139	 52.76	0	156463..157260	+	265	83643052	-	HCH_00143	-	amino acid ABC transporter periplasmic protein
140	 59.80	+1	157296..159158	-	620	83643053	-	HCH_00144	-	ABC-type multidrug transport system, ATPase and permease components
141	 55.70	0	159404..160078	-	224	83643054	-	HCH_00145	-	hypothetical protein
142	 58.95	0	160242..161498	-	418	83643055	-	HCH_00146	-	hypothetical protein
143	 56.74	0	161766..162188	-	140	83643056	-	HCH_00147	-	hypothetical protein
144	 54.95	0	162466..163122	+	218	83643057	-	HCH_00148	-	hypothetical protein
145	 53.75	0	163258..163590	-	110	83643058	-	HCH_00149	-	hypothetical protein
146	 55.70	0	163913..164386	+	157	83643059	-	HCH_00150	-	thioesterase
147	 55.64	0	164406..164822	-	138	83643060	-	HCH_00151	-	CBS domain-containing protein
148	 56.90	0	164848..166290	-	480	83643061	-	HCH_00152	-	dihydrolipoamide dehydrogenase
53.37	MEAN

5.65	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.