IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
531	 53.76	0	563121..563678	+	185	83643444	-	HCH_00550	-	putative transcriptional regulator
532	 55.97	0	563722..564198	+	158	83643445	-	HCH_00551	-	endonuclease
533	 56.78	0	564182..564697	+	171	83643446	-	HCH_00552	-	pyrimidine operon attenuation protein/uracil phosphoribosyltransferase
534	 53.73	0	564757..565761	+	334	83643447	pyrB	HCH_00553	-	aspartate carbamoyltransferase catalytic subunit
535	 57.56	0	565758..567053	+	431	83643448	-	HCH_00554	-	dihydroorotase-like protein
536	 48.46	0	567129..567518	+	129	83643449	-	HCH_00555	-	HHH motif-containing protein
537	 50.72	0	567630..567905	-	91	83643450	-	HCH_00556	-	nucleoid DNA-binding protein
538	 44.05	-1	568053..568220	+	55	83643451	-	HCH_00557	-	hypothetical protein
539	 57.43	0	568247..569329	+	360	83643452	-	HCH_00558	-	hypothetical protein
540	 54.80	0	569393..570412	+	339	83643453	-	HCH_00559	-	hypothetical protein
541	 55.62	0	570500..572590	+	696	83643454	-	HCH_00560	-	membrane protein, transporter-related
542	 55.79	0	572668..574203	-	511	83643455	pckA	HCH_00561	-	phosphoenolpyruvate carboxykinase
543	 56.18	0	574434..575291	-	285	83643456	-	HCH_00562	-	disulfide bond chaperones of the HSP33 family
544	 55.56	0	575322..575735	-	137	83643457	-	HCH_00563	-	ribosome-associated heat shock protein implicated in the recycling of the 50S subunit S4-like protein
545	 50.59	0	575749..576426	-	225	83643458	-	HCH_00564	-	HAD superfamily hydrolase
546	 54.44	0	576542..577375	+	277	83643459	cysQ	HCH_00565	-	3'(2'),5'-bisphosphate nucleotidase
547	 54.49	0	577467..577811	-	114	83643460	-	HCH_00566	-	hypothetical protein
548	 54.90	0	578015..578830	-	271	83643461	mutM1	HCH_00567	-	formamidopyrimidine-DNA glycosylase
549	 52.68	0	579135..580328	+	397	83643462	-	HCH_00568	-	Fatty-acid desaturase
550	 54.45	0	580477..582105	+	542	83643463	-	HCH_00570	-	hypothetical protein
551	 54.55	0	582169..582762	-	197	83643464	-	HCH_00571	-	N6-adenine-specific methylase
552	 55.97	0	582946..584076	+	376	83643465	ftsY	HCH_00572	-	signal recognition particle-docking protein FtsY
553	 55.01	0	584121..584798	+	225	83643466	-	HCH_00573	-	ATPase involved in cell division
554	 55.46	0	584832..585866	+	344	83643467	-	HCH_00574	-	cell division protein
555	 50.41	0	586107..586961	+	284	83643468	rpoH	HCH_00575	-	RNA polymerase factor sigma-32
556	 57.58	0	587049..587939	+	296	83643469	-	HCH_00576	-	3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase
557	 52.34	0	587932..588699	+	255	83643470	gip	HCH_00577	-	hydroxypyruvate isomerase
558	 56.51	0	588833..589639	+	268	83643471	djlA	HCH_00578	-	DNA-J like membrane chaperone protein
559	 52.72	0	589711..590391	+	226	83643472	-	HCH_00579	-	response regulator
560	 56.77	0	590357..591811	+	484	83643473	-	HCH_00580	-	Signal transduction histidine kinase
561	 50.84	0	591875..592171	-	98	83643474	-	HCH_00581	-	hypothetical protein
562	 52.82	0	592306..592962	-	218	83643475	-	HCH_00582	-	transcriptional regulator
563	 39.58	-2	593146..593337	-	63	83643476	-	HCH_00583	-	hypothetical protein
564	 52.74	0	593499..593936	+	145	83643477	-	HCH_00584	-	hypothetical protein
565	 51.98	0	593966..594469	+	167	83643478	greB	HCH_00585	-	transcription elongation factor GreB
566	 53.48	0	594497..595459	+	320	83643479	-	HCH_00586	-	hypothetical protein
567	 50.67	0	595565..595939	+	124	83643480	-	HCH_00587	-	hypothetical protein
568	 50.94	0	595961..596278	-	105	83643481	-	HCH_00588	-	integrase
569	 50.88	0	596474..596815	-	113	83643482	-	HCH_00589	-	Acyl-CoA-binding protein
570	 52.17	0	596876..597358	+	160	83643483	-	HCH_00590	-	hypothetical protein
571	 56.19	0	597600..599345	+	581	83643484	-	HCH_00591	-	ABC-type multidrug transport system, ATPase and permease components
572	 52.88	0	599386..599697	+	103	83643485	-	HCH_00592	-	hypothetical protein
573	 54.70	0	599704..602034	-	776	83643486	-	HCH_00593	-	superfamily I DNA/RNA helicase
574	 45.25	-1	602711..603541	-	276	83643487	-	HCH_00594	-	hypothetical protein
575	 55.27	0	605820..606407	-	195	83643488	-	HCH_00595	-	SOS-response transcriptional repressors (RecA-mediated autopeptidase)
576	 56.92	0	606564..606758	+	64	83643489	-	HCH_00596	-	hypothetical protein
577	 54.75	0	606779..607768	+	329	83643490	-	HCH_00597	-	phage replication protein O
578	 57.81	0	607771..608481	+	236	83643491	-	HCH_00598	-	hypothetical protein
579	 57.14	0	608578..608934	+	118	83643492	-	HCH_00599	-	hypothetical protein
580	 56.36	0	609105..610676	+	523	83643493	-	HCH_00600	-	hypothetical protein
581	 46.61	-1	610795..611457	+	220	83643494	-	HCH_00602	-	hypothetical protein
582	 48.52	0	611419..611958	-	179	83643495	-	HCH_00601	-	transposase
583	 47.62	-1	612029..612427	-	132	83643496	-	HCH_00603	-	transposase
584	 45.26	-1	612490..612774	+	94	83643497	-	HCH_00604	-	hypothetical protein
585	 45.73	-1	612969..613331	+	120	83643498	-	HCH_00605	-	hypothetical protein
586	 31.71	-2	613595..613717	+	40	83643499	-	HCH_00606	-	hypothetical protein
587	 34.88	-2	613737..614384	+	215	83643500	-	HCH_00607	-	hypothetical protein
588	 35.67	-2	614521..614991	+	156	83643501	-	HCH_00608	-	hypothetical protein
589	 39.24	-2	614984..615220	+	78	83643502	-	HCH_00609	-	TPR repeat-containing protein
590	 42.90	-1	615292..615960	+	222	83643503	-	HCH_00610	-	hypothetical protein
591	 43.60	-1	615979..616533	+	184	83643504	-	HCH_00611	-	hypothetical protein
592	 54.06	0	616683..623909	-	2408	83643505	-	HCH_00612	-	RTX toxins and related Ca2+-binding protein
593	 39.91	-2	623902..624585	-	227	83643506	-	HCH_00614	-	hypothetical protein
594	 44.77	-1	624654..625370	-	238	83643507	-	HCH_00615	-	hypothetical protein
595	 50.00	0	625402..626247	-	281	83643508	-	HCH_00616	-	hypothetical protein
596	 40.09	-2	626730..627395	-	221	83643509	-	HCH_00617	-	hypothetical protein
597	 43.41	-1	627431..628105	-	224	83643510	-	HCH_00618	-	hypothetical protein
598	 55.56	0	628563..628742	+	59	83643511	-	HCH_00619	-	hypothetical protein
599	 46.94	-1	628891..629331	-	146	83643512	-	HCH_00620	-	DNA repair protein
600	 50.78	0	629705..630088	-	127	83643513	-	HCH_00621	-	hypothetical protein
601	 47.69	-1	630085..630300	-	71	83643514	-	HCH_00622	-	transcriptional regulator
602	 50.36	0	630653..631903	-	416	83643515	-	HCH_00623	-	integrase
603	 54.17	0	632173..632460	-	95	83643516	-	HCH_00624	-	hypothetical protein
604	 58.60	0	632606..633361	+	251	83643517	-	HCH_00625	-	ankyrin repeat-containing protein
605	 51.55	0	633477..635546	+	689	83643518	-	HCH_00626	-	GGDEF domain-containing protein
606	 45.78	-1	635543..635791	+	82	83643519	-	HCH_00627	-	hypothetical protein
607	 55.88	0	635772..636077	+	101	83643520	-	HCH_00628	-	hypothetical protein
608	 51.97	0	636123..636884	-	253	83643521	-	HCH_00629	-	hypothetical protein
609	 52.05	0	636871..637725	-	284	83643522	-	HCH_00631	-	hypothetical protein
610	 50.39	0	637722..637850	-	42	83643523	-	HCH_00632	-	hypothetical protein
611	 54.44	0	637824..638003	+	59	83643524	-	HCH_00633	-	hypothetical protein
612	 51.89	0	638099..638389	-	96	83643525	-	HCH_00634	-	hypothetical protein
613	 49.08	0	638651..639139	-	162	83643526	-	HCH_00635	-	hemolysin-coregulated protein (uncharacterized)
614	 54.84	0	639838..642492	-	884	83643527	-	HCH_00636	-	Serine/threonine protein kinase
615	 46.53	-1	642573..642716	+	47	83643528	-	HCH_00637	-	hypothetical protein
616	 58.36	0	642815..643705	-	296	83643529	mmsB	HCH_00638	-	3-hydroxyisobutyrate dehydrogenase
617	 57.87	0	643772..644908	-	378	83643530	-	HCH_00639	-	enoyl-CoA hydratase/carnithine racemase
618	 59.39	+1	644936..645718	-	260	83643531	-	HCH_00640	-	enoyl-CoA hydratase
619	 58.48	0	645718..646878	-	386	83643532	-	HCH_00641	-	Acyl-CoA dehydrogenase
620	 58.32	0	646917..648413	-	498	83643533	mmsA1	HCH_00642	-	methylmalonate-semialdehyde dehydrogenase
621	 58.62	0	648827..649000	-	57	83643534	-	HCH_00643	-	hypothetical protein
622	 55.29	0	649242..649997	+	251	83643535	-	HCH_00644	-	hypothetical protein
623	 55.70	0	650121..651770	+	549	83643536	-	HCH_00645	-	FOG: CheY-like receiver
624	 58.72	0	651788..652756	-	322	83643537	hemH	HCH_00646	-	ferrochelatase
625	 56.79	0	653089..653412	+	107	83643538	-	HCH_00647	-	cytochrome c553
626	 58.82	0	653620..654447	+	275	83643539	-	HCH_00648	-	AraC-type DNA-binding domain-containing protein
627	 50.31	0	654718..655371	+	217	83643540	-	HCH_00649	-	hypothetical protein
628	 62.73	+1	655378..656367	+	329	83643541	-	HCH_00650	-	delta-aminolevulinic acid dehydratase
629	 56.36	0	656421..657788	-	455	83643542	-	HCH_00651	-	Rossmann fold nucleotide-binding protein
630	 66.67	+2	657820..657924	+	34	83643543	-	HCH_00652	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.