IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
473	 56.07	0	501904..502809	+	301	83643386	-	HCH_00489	-	esterase/lipase
474	 57.47	0	502955..503617	+	220	83643387	-	HCH_00490	-	2OG-Fe(II) oxygenase superfamily protein
475	 55.35	0	503671..504165	-	164	83643388	-	HCH_00491	-	glutathione peroxidase
476	 56.45	0	504162..504866	-	234	83643389	-	HCH_00492	-	hypothetical protein
477	 57.42	0	504879..505289	-	136	83643390	-	HCH_00493	-	CoA-binding protein
478	 55.02	0	505362..507842	-	826	83643391	-	HCH_00494	-	signal transduction protein
479	 53.67	0	507959..508981	-	340	83643392	panE1	HCH_00495	-	2-dehydropantoate 2-reductase
480	 51.85	0	509010..509117	+	35	83643393	-	HCH_00496	-	hypothetical protein
481	 44.13	-1	509525..509737	-	70	83643394	-	HCH_00497	-	hypothetical protein
482	 43.59	-1	510170..510286	+	38	83643395	-	HCH_00499	-	hypothetical protein
483	 51.84	0	510218..511114	-	298	83643396	-	HCH_00498	-	methyl-accepting chemotaxis protein
484	 55.25	0	511265..512482	-	405	83643397	-	HCH_00500	-	response regulator
485	 49.25	0	512676..513140	+	154	83643398	-	HCH_00501	-	transcriptional regulator
486	 51.78	0	513209..513940	-	243	83643399	-	HCH_00502	-	hypothetical protein
487	 54.01	0	514326..515660	+	444	83643400	-	HCH_00503	-	hypothetical protein
488	 51.60	0	515756..516877	+	373	83643401	-	HCH_00504	-	response regulator
489	 55.60	0	516884..518239	-	451	83643402	-	HCH_00505	-	cytochrome c peroxidase
490	 49.63	0	518650..518919	+	89	83643403	-	HCH_00506	-	hypothetical protein
491	 46.95	-1	519099..519377	+	92	83643404	-	HCH_00507	-	protein-tyrosine-phosphatase
492	 50.96	0	519389..519649	+	86	83643405	-	HCH_00508	-	transcriptional regulator
493	 52.62	0	519780..520256	+	158	83643406	-	HCH_00509	-	protein-tyrosine-phosphatase
494	 51.37	0	520257..521276	+	339	83643407	-	HCH_00510	-	arsenite efflux pump ACR3 and related permease
495	 45.75	-1	522056..522925	-	289	83643408	-	HCH_00511	-	hypothetical protein
496	 51.44	0	523551..525422	+	623	83643409	-	HCH_00513	-	methyl-accepting chemotaxis protein
497	 53.46	0	525501..525659	+	52	83643410	-	HCH_00514	-	hypothetical protein
498	 41.84	-2	526203..526484	+	93	83643411	-	HCH_00515	-	hypothetical protein
499	 58.08	0	526547..527431	-	294	83643412	-	HCH_00516	-	transcriptional regulator
500	 57.48	0	527600..528535	+	311	83643413	-	HCH_00518	-	esterase/lipase
501	 58.02	0	528749..528910	+	53	83643414	-	HCH_00519	-	hypothetical protein
502	 55.68	0	528870..530717	+	615	83643415	-	HCH_00521	-	ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components
503	 52.07	0	530699..531205	-	168	83643416	-	HCH_00520	-	hypothetical protein
504	 52.01	0	531475..532470	+	331	83643417	-	HCH_00522	-	sulfurtransferase
505	 59.29	+1	532522..532860	-	112	83643418	-	HCH_00523	-	hypothetical protein
506	 54.55	0	532864..533829	-	321	83643419	-	HCH_00524	-	DnaJ-class molecular chaperone
507	 55.87	0	533997..534839	+	280	83643420	-	HCH_00525	-	external DNA catabolism protein
508	 54.18	0	534948..535676	+	242	83643421	-	HCH_00526	-	short chain dehydrogenase
509	 54.32	0	535712..536278	+	188	83643422	folE	HCH_00527	-	GTP cyclohydrolase I
510	 58.74	0	536333..537379	-	348	83643423	-	HCH_00528	-	deacylase
511	 53.65	0	537435..538118	-	227	83643424	-	HCH_00529	-	periplasmic/secreted protein
512	 44.09	-1	538655..538747	+	30	83643425	-	HCH_00531	-	hypothetical protein
513	 45.45	-1	538658..538756	-	32	83643426	-	HCH_00530	-	hypothetical protein
514	 54.99	0	538780..539781	+	333	83643427	-	HCH_00532	-	AraC-type DNA-binding domain-containing protein
515	 54.98	0	539805..540728	-	307	83643428	-	HCH_00533	-	hypothetical protein
516	 55.78	0	540860..542605	-	581	83643429	-	HCH_00534	-	Poly(3-hydroxyalkanoate) synthetase
517	 59.09	+1	542775..543566	-	263	83643430	-	HCH_00535	-	ABC-type Mn2+/Zn2+ transport system, permease components
518	 58.33	0	543559..544326	-	255	83643431	-	HCH_00536	-	ABC-type Mn/Zn transport system, ATPase component
519	 56.65	0	544323..544811	-	162	83643432	-	HCH_00537	-	Fe2+/Zn2+ uptake regulation protein
520	 53.82	0	545176..546405	+	409	83643433	malE	HCH_00538	-	maltose ABC transporter periplasmic protein
521	 53.72	0	546455..546925	-	156	83643434	-	HCH_00539	-	CheW-like domain-containing protein
522	 59.41	+1	547062..548108	-	348	83643435	-	HCH_00540	-	chemotaxis response regulator
523	 56.85	0	548113..556293	-	2726	83643436	-	HCH_00541	-	chemotaxis protein histidine kinase-like kinase
524	 52.01	0	556305..557198	-	297	83643437	-	HCH_00542	-	methylase of chemotaxis methyl-accepting protein
525	 54.52	0	557263..559329	-	688	83643438	-	HCH_00543	-	methyl-accepting chemotaxis protein
526	 53.96	0	559407..559949	-	180	83643439	-	HCH_00544	-	chemotaxis signal transduction protein
527	 53.72	0	559968..560330	-	120	83643440	-	HCH_00545	-	FOG: CheY-like receiver
528	 47.80	0	560390..560776	-	128	83643441	-	HCH_00546	-	FOG: CheY-like receiver
529	 53.15	0	561158..562126	+	322	83643442	gshB	HCH_00547	-	glutathione synthetase
530	 55.31	0	562199..563026	+	275	83643443	-	HCH_00548	-	periplasmic protein TonB, links inner and outer membranes
531	 53.76	0	563121..563678	+	185	83643444	-	HCH_00550	-	putative transcriptional regulator
532	 55.97	0	563722..564198	+	158	83643445	-	HCH_00551	-	endonuclease
533	 56.78	0	564182..564697	+	171	83643446	-	HCH_00552	-	pyrimidine operon attenuation protein/uracil phosphoribosyltransferase
534	 53.73	0	564757..565761	+	334	83643447	pyrB	HCH_00553	-	aspartate carbamoyltransferase catalytic subunit
535	 57.56	0	565758..567053	+	431	83643448	-	HCH_00554	-	dihydroorotase-like protein
536	 48.46	0	567129..567518	+	129	83643449	-	HCH_00555	-	HHH motif-containing protein
537	 50.72	0	567630..567905	-	91	83643450	-	HCH_00556	-	nucleoid DNA-binding protein
538	 44.05	-1	568053..568220	+	55	83643451	-	HCH_00557	-	hypothetical protein
539	 57.43	0	568247..569329	+	360	83643452	-	HCH_00558	-	hypothetical protein
540	 54.80	0	569393..570412	+	339	83643453	-	HCH_00559	-	hypothetical protein
541	 55.62	0	570500..572590	+	696	83643454	-	HCH_00560	-	membrane protein, transporter-related
542	 55.79	0	572668..574203	-	511	83643455	pckA	HCH_00561	-	phosphoenolpyruvate carboxykinase
543	 56.18	0	574434..575291	-	285	83643456	-	HCH_00562	-	disulfide bond chaperones of the HSP33 family
544	 55.56	0	575322..575735	-	137	83643457	-	HCH_00563	-	ribosome-associated heat shock protein implicated in the recycling of the 50S subunit S4-like protein
545	 50.59	0	575749..576426	-	225	83643458	-	HCH_00564	-	HAD superfamily hydrolase
546	 54.44	0	576542..577375	+	277	83643459	cysQ	HCH_00565	-	3'(2'),5'-bisphosphate nucleotidase
547	 54.49	0	577467..577811	-	114	83643460	-	HCH_00566	-	hypothetical protein
548	 54.90	0	578015..578830	-	271	83643461	mutM1	HCH_00567	-	formamidopyrimidine-DNA glycosylase
549	 52.68	0	579135..580328	+	397	83643462	-	HCH_00568	-	Fatty-acid desaturase
550	 54.45	0	580477..582105	+	542	83643463	-	HCH_00570	-	hypothetical protein
551	 54.55	0	582169..582762	-	197	83643464	-	HCH_00571	-	N6-adenine-specific methylase
552	 55.97	0	582946..584076	+	376	83643465	ftsY	HCH_00572	-	signal recognition particle-docking protein FtsY
553	 55.01	0	584121..584798	+	225	83643466	-	HCH_00573	-	ATPase involved in cell division
554	 55.46	0	584832..585866	+	344	83643467	-	HCH_00574	-	cell division protein
555	 50.41	0	586107..586961	+	284	83643468	rpoH	HCH_00575	-	RNA polymerase factor sigma-32
556	 57.58	0	587049..587939	+	296	83643469	-	HCH_00576	-	3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase
557	 52.34	0	587932..588699	+	255	83643470	gip	HCH_00577	-	hydroxypyruvate isomerase
558	 56.51	0	588833..589639	+	268	83643471	djlA	HCH_00578	-	DNA-J like membrane chaperone protein
559	 52.72	0	589711..590391	+	226	83643472	-	HCH_00579	-	response regulator
560	 56.77	0	590357..591811	+	484	83643473	-	HCH_00580	-	Signal transduction histidine kinase
561	 50.84	0	591875..592171	-	98	83643474	-	HCH_00581	-	hypothetical protein
562	 52.82	0	592306..592962	-	218	83643475	-	HCH_00582	-	transcriptional regulator
563	 39.58	-2	593146..593337	-	63	83643476	-	HCH_00583	-	hypothetical protein
564	 52.74	0	593499..593936	+	145	83643477	-	HCH_00584	-	hypothetical protein
565	 51.98	0	593966..594469	+	167	83643478	greB	HCH_00585	-	transcription elongation factor GreB
566	 53.48	0	594497..595459	+	320	83643479	-	HCH_00586	-	hypothetical protein
567	 50.67	0	595565..595939	+	124	83643480	-	HCH_00587	-	hypothetical protein
568	 50.94	0	595961..596278	-	105	83643481	-	HCH_00588	-	integrase
569	 50.88	0	596474..596815	-	113	83643482	-	HCH_00589	-	Acyl-CoA-binding protein
570	 52.17	0	596876..597358	+	160	83643483	-	HCH_00590	-	hypothetical protein
571	 56.19	0	597600..599345	+	581	83643484	-	HCH_00591	-	ABC-type multidrug transport system, ATPase and permease components
572	 52.88	0	599386..599697	+	103	83643485	-	HCH_00592	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.