IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
407	 57.20	0	428738..429223	+	161	83643320	-	HCH_00420	-	cell wall-associated hydrolase (invasion-associated protein)
408	 50.00	0	429326..429661	+	111	83643321	-	HCH_00421	-	protein tyrosine phosphatase
409	 49.85	0	429741..430067	+	108	83643322	-	HCH_00422	-	hypothetical protein
410	 56.00	0	430217..431032	+	271	83643323	-	HCH_00423	-	hypothetical protein
411	 56.25	0	431729..432352	+	207	83643324	-	HCH_00424	-	putative threonine efflux protein
412	 52.22	0	432365..432883	+	172	83643325	-	HCH_00425	-	alkylated DNA repair protein
413	 53.90	0	432895..433599	+	234	83643326	-	HCH_00426	-	uncharacterized Fe-S protein
414	 56.41	0	433740..434363	+	207	83643327	-	HCH_00427	-	hypothetical protein
415	 49.53	0	434320..434850	+	176	83643328	-	HCH_00428	-	hypothetical protein
416	 61.62	+1	434908..439248	-	1446	83643329	-	HCH_00429	-	cation transport ATPase
417	 56.03	0	439351..440046	-	231	83643330	-	HCH_00430	-	hypothetical protein
418	 57.97	0	440351..441799	-	482	83643331	pyk	HCH_00431	-	pyruvate kinase
419	 53.43	0	441825..442829	-	334	83643332	gap2	HCH_00432	-	glyceraldehyde-3-phosphate dehydrogenase, type I
420	 58.77	0	443052..444875	+	607	83643333	edd	HCH_00433	-	phosphogluconate dehydratase
421	 55.52	0	444868..445836	+	322	83643334	glk	HCH_00434	-	glucokinase
422	 59.44	+1	445836..446720	+	294	83643335	-	HCH_00435	-	oxidoreductase
423	 58.77	0	446753..447094	-	113	83643336	-	HCH_00436	-	hypothetical protein
424	 55.41	0	447079..447771	-	230	83643337	-	HCH_00437	-	aspartate racemase
425	 50.77	0	447904..448293	-	129	83643338	-	HCH_00438	-	hypothetical protein
426	 59.88	+1	448498..450618	-	706	83643339	malS	HCH_00439	-	periplasmic alpha-amylase precursor
427	 54.77	0	450877..452070	+	397	83643340	malE	HCH_00440	-	maltose ABC transporter periplasmic protein
428	 56.22	0	452211..453761	+	516	83643341	malF	HCH_00441	-	maltose transporter membrane protein
429	 58.47	0	453772..454662	+	296	83643342	malG	HCH_00442	-	maltose transporter permease
430	 53.17	0	454819..455307	+	162	83643343	-	HCH_00443	-	hypothetical protein
431	 48.75	0	455565..455843	+	92	83643344	-	HCH_00444	-	RNA-binding protein
432	 54.17	0	455897..456040	-	47	83643345	-	HCH_00445	-	hypothetical protein
433	 59.55	+1	456108..456641	-	177	83643346	-	HCH_00446	-	NTPase
434	 55.86	0	456780..457103	+	107	83643347	-	HCH_00447	-	DnaK suppressor protein
435	 54.28	0	457128..458354	-	408	83643348	-	HCH_00448	-	FOG: CheY-like receiver
436	 54.30	0	458559..459722	+	387	83643349	-	HCH_00449	-	methyl-accepting chemotaxis protein
437	 49.50	0	459798..460100	+	100	83643350	-	HCH_00450	-	anti-anti-sigma regulatory factor
438	 56.63	0	460130..461812	+	560	83643351	-	HCH_00451	-	Serine phosphatase RsbU, regulator of sigma subunit
439	 57.30	0	461840..462586	-	248	83643352	-	HCH_00452	-	uncharacterized flavoprotein
440	 55.94	0	462686..463459	-	257	83643353	-	HCH_00453	-	methyl-accepting chemotaxis protein
441	 54.27	0	463623..463985	+	120	83643354	-	HCH_00454	-	FOG: CheY-like receiver
442	 57.28	0	464014..466101	+	695	83643355	-	HCH_00455	-	chemotaxis protein histidine kinase-like kinase
443	 54.71	0	466085..466594	+	169	83643356	-	HCH_00456	-	chemotaxis signal transduction protein
444	 56.76	0	466640..468961	+	773	83643357	-	HCH_00457	-	methyl-accepting chemotaxis protein
445	 56.11	0	469054..471384	+	776	83643358	-	HCH_00458	-	methyl-accepting chemotaxis protein
446	 56.98	0	471384..471899	+	171	83643359	-	HCH_00459	-	chemotaxis signal transduction protein
447	 58.33	0	471896..472195	+	99	83643360	-	HCH_00460	-	hypothetical protein
448	 52.77	0	472209..473057	+	282	83643361	-	HCH_00461	-	methylase of chemotaxis methyl-accepting protein
449	 54.56	0	473059..473694	+	211	83643362	-	HCH_00462	-	chemoreceptor glutamine deamidase CheD
450	 60.31	+1	473745..474830	+	361	83643363	-	HCH_00463	-	chemotaxis response regulator
451	 55.19	0	474827..475288	-	153	83643364	-	HCH_00464	-	histone acetyltransferase HPA2-like acetyltransferase
452	 61.18	+1	475293..476003	-	236	83643365	-	HCH_00465	-	transcriptional regulator
453	 60.43	+1	476368..478755	+	795	83643366	-	HCH_00466	-	phosphohydrolase
454	 55.39	0	478813..480000	-	395	83643367	-	HCH_00467	-	PDZ domain-containing protein
455	 37.62	-2	480662..481081	-	139	83643368	-	HCH_00468	-	hypothetical protein
456	 40.46	-2	481140..481616	-	158	83643369	-	HCH_00469	-	hypothetical protein
457	 35.90	-2	481705..481860	-	51	83643370	-	HCH_00470	-	hypothetical protein
458	 49.62	0	482608..483405	-	265	83643371	-	HCH_00471	-	Rhs family protein
459	 57.26	0	483922..488226	-	1434	83643372	-	HCH_00473	-	Rhs family protein
460	 46.88	-1	488225..488416	+	63	83643373	-	HCH_00474	-	hypothetical protein
461	 51.47	0	488450..488995	-	181	83643374	-	HCH_00475	-	hypothetical protein
462	 56.92	0	489043..489945	-	300	83643375	-	HCH_00476	-	PAS/PAC domain-containing protein
463	 57.77	0	490165..490692	+	175	83643376	-	HCH_00477	-	acetyltransferase
464	 57.66	0	490710..490931	+	73	83643377	-	HCH_00478	-	hypothetical protein
465	 57.08	0	491042..492157	-	371	83643378	-	HCH_00479	-	maltose/maltodextrin transporter ATP-binding protein
466	 58.29	0	492191..493813	-	540	83643379	-	HCH_00480	-	glycosidase
467	 58.22	0	494013..496769	-	918	83643380	malT	HCH_00481	-	transcriptional regulator MalT
468	 55.29	0	497239..498240	+	333	83643381	-	HCH_00484	-	DMT family permease
469	 58.69	0	498148..499476	-	442	83643382	-	HCH_00483	-	di- and tricarboxylate transporters
470	 56.94	0	499593..500096	+	167	83643383	-	HCH_00485	-	histone acetyltransferase HPA2-like acetyltransferase
471	 56.98	0	500108..501067	-	319	83643384	-	HCH_00486	-	permease
472	 49.74	0	501234..501623	-	129	83643385	-	HCH_00487	-	hypothetical protein
473	 56.07	0	501904..502809	+	301	83643386	-	HCH_00489	-	esterase/lipase
474	 57.47	0	502955..503617	+	220	83643387	-	HCH_00490	-	2OG-Fe(II) oxygenase superfamily protein
475	 55.35	0	503671..504165	-	164	83643388	-	HCH_00491	-	glutathione peroxidase
476	 56.45	0	504162..504866	-	234	83643389	-	HCH_00492	-	hypothetical protein
477	 57.42	0	504879..505289	-	136	83643390	-	HCH_00493	-	CoA-binding protein
478	 55.02	0	505362..507842	-	826	83643391	-	HCH_00494	-	signal transduction protein
479	 53.67	0	507959..508981	-	340	83643392	panE1	HCH_00495	-	2-dehydropantoate 2-reductase
480	 51.85	0	509010..509117	+	35	83643393	-	HCH_00496	-	hypothetical protein
481	 44.13	-1	509525..509737	-	70	83643394	-	HCH_00497	-	hypothetical protein
482	 43.59	-1	510170..510286	+	38	83643395	-	HCH_00499	-	hypothetical protein
483	 51.84	0	510218..511114	-	298	83643396	-	HCH_00498	-	methyl-accepting chemotaxis protein
484	 55.25	0	511265..512482	-	405	83643397	-	HCH_00500	-	response regulator
485	 49.25	0	512676..513140	+	154	83643398	-	HCH_00501	-	transcriptional regulator
486	 51.78	0	513209..513940	-	243	83643399	-	HCH_00502	-	hypothetical protein
487	 54.01	0	514326..515660	+	444	83643400	-	HCH_00503	-	hypothetical protein
488	 51.60	0	515756..516877	+	373	83643401	-	HCH_00504	-	response regulator
489	 55.60	0	516884..518239	-	451	83643402	-	HCH_00505	-	cytochrome c peroxidase
490	 49.63	0	518650..518919	+	89	83643403	-	HCH_00506	-	hypothetical protein
491	 46.95	-1	519099..519377	+	92	83643404	-	HCH_00507	-	protein-tyrosine-phosphatase
492	 50.96	0	519389..519649	+	86	83643405	-	HCH_00508	-	transcriptional regulator
493	 52.62	0	519780..520256	+	158	83643406	-	HCH_00509	-	protein-tyrosine-phosphatase
494	 51.37	0	520257..521276	+	339	83643407	-	HCH_00510	-	arsenite efflux pump ACR3 and related permease
495	 45.75	-1	522056..522925	-	289	83643408	-	HCH_00511	-	hypothetical protein
496	 51.44	0	523551..525422	+	623	83643409	-	HCH_00513	-	methyl-accepting chemotaxis protein
497	 53.46	0	525501..525659	+	52	83643410	-	HCH_00514	-	hypothetical protein
498	 41.84	-2	526203..526484	+	93	83643411	-	HCH_00515	-	hypothetical protein
499	 58.08	0	526547..527431	-	294	83643412	-	HCH_00516	-	transcriptional regulator
500	 57.48	0	527600..528535	+	311	83643413	-	HCH_00518	-	esterase/lipase
501	 58.02	0	528749..528910	+	53	83643414	-	HCH_00519	-	hypothetical protein
502	 55.68	0	528870..530717	+	615	83643415	-	HCH_00521	-	ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components
503	 52.07	0	530699..531205	-	168	83643416	-	HCH_00520	-	hypothetical protein
504	 52.01	0	531475..532470	+	331	83643417	-	HCH_00522	-	sulfurtransferase
505	 59.29	+1	532522..532860	-	112	83643418	-	HCH_00523	-	hypothetical protein
506	 54.55	0	532864..533829	-	321	83643419	-	HCH_00524	-	DnaJ-class molecular chaperone
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.