IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4151	 60.19	+1	4512457..4513089	-	210	83647064	ccmB	HCH_04368	-	heme exporter protein CcmB
4152	 58.18	0	4513140..4513775	-	211	83647065	ccmA	HCH_04369	-	cytochrome c biogenesis protein CcmA
4153	 59.97	+1	4514031..4515419	+	462	83647066	-	HCH_04370	-	hypothetical protein
4154	 55.56	0	4515416..4515766	+	116	83647067	-	HCH_04371	-	flagellar protein FhlB cytoplasmic domain-containing protein
4155	 52.04	0	4516028..4516321	+	97	83647068	-	HCH_04373	-	hypothetical protein
4156	 53.77	0	4516559..4517062	+	167	83647069	-	HCH_04374	-	DNA-binding ferritin-like protein
4157	 47.62	-1	4517271..4517375	+	34	83647070	-	HCH_04375	-	hypothetical protein
4158	 53.57	0	4517431..4518354	+	307	83647071	-	HCH_04376	-	small-conductance mechanosensitive channel
4159	 42.56	-1	4518420..4518755	-	111	83647072	-	HCH_04377	-	hypothetical protein
4160	 40.90	-2	4518775..4519197	-	140	83647073	-	HCH_04378	-	hypothetical protein
4161	 48.46	0	4519242..4520120	-	292	83647074	-	HCH_04379	-	amino acid ABC transporter periplasmic protein
4162	 38.64	-2	4520264..4520395	+	43	83647075	-	HCH_04380	-	hypothetical protein
4163	 51.80	0	4520526..4521164	+	212	83647076	-	HCH_04381	-	periplasmic or secreted lipoprotein
4164	 51.94	0	4521289..4522218	-	309	83647077	-	HCH_04382	-	hypothetical protein
4165	 55.14	0	4522203..4523885	-	560	83647078	-	HCH_04383	-	hypothetical protein
4166	 54.71	0	4524002..4524829	-	275	83647079	-	HCH_04384	-	phosphohydrolase
4167	 55.52	0	4524836..4525813	-	325	83647080	-	HCH_04385	-	sphingosine kinase and enzyme related to diacylglycerol kinase
4168	 50.98	0	4526038..4526241	-	67	83647081	-	HCH_04386	-	hypothetical protein
4169	 48.54	0	4526325..4526495	-	56	83647082	-	HCH_04387	-	protein of unknown fuction (DUF1328)
4170	 51.48	0	4526911..4527687	-	258	83647083	-	HCH_04388	-	flavodoxin reductase (ferredoxin-NADPH reductase) family protein 1
4171	 55.78	0	4527803..4528684	+	293	83647084	-	HCH_04389	-	transcriptional regulator
4172	 53.22	0	4528702..4529214	-	170	83647085	-	HCH_04390	-	acetyltransferase
4173	 54.89	0	4529334..4529783	-	149	83647086	-	HCH_04391	-	hypothetical protein
4174	 52.60	0	4529785..4530651	-	288	83647087	-	HCH_04392	-	hypothetical protein
4175	 56.31	0	4530854..4531819	+	321	83647088	-	HCH_04393	-	hypothetical protein
4176	 50.46	0	4531816..4532358	-	180	83647089	-	HCH_04394	-	hypothetical protein
4177	 47.47	-1	4532335..4532433	+	32	83647090	-	HCH_04395	-	hypothetical protein
4178	 34.91	-2	4532511..4532828	-	105	83647091	-	HCH_04396	-	hypothetical protein
4179	 44.79	-1	4532874..4533065	-	63	83647092	-	HCH_04397	-	hypothetical protein
4180	 48.26	0	4533105..4533305	+	66	83647093	-	HCH_04398	-	hypothetical protein
4181	 47.50	-1	4533376..4533495	+	39	83647094	-	HCH_04400	-	hypothetical protein
4182	 40.13	-2	4533467..4534216	-	249	83647095	-	HCH_04399	-	hypothetical protein
4183	 43.61	-1	4534224..4535975	-	583	83647096	-	HCH_04401	-	hypothetical protein
4184	 48.92	0	4535972..4536946	-	324	83647097	-	HCH_04402	-	hypothetical protein
4185	 53.54	0	4537228..4538088	-	286	83647098	-	HCH_04403	-	Zn-dependent hydrolase
4186	 56.74	0	4538303..4538584	+	93	83647099	-	HCH_04404	-	parvulin-like peptidyl-prolyl isomerase
4187	 57.87	0	4538746..4540530	+	594	83647100	-	HCH_04405	-	ABC-type multidrug transport system, ATPase and permease components
4188	 58.02	0	4540542..4540946	-	134	83647101	-	HCH_04406	-	hypothetical protein
4189	 59.22	+1	4541228..4542502	+	424	83647102	-	HCH_04407	-	O-acetylhomoserine sulfhydrylase
4190	 59.99	+1	4542698..4544554	-	618	83647103	norD	HCH_04408	-	nitric oxide reductase activation protein
4191	 55.56	0	4544565..4545950	-	461	83647104	norB	HCH_04410	-	nitric oxide reductase large subunit
4192	 55.78	0	4545975..4546415	-	146	83647105	-	HCH_04411	-	cytochrome c, mono- and diheme variants
4193	 60.89	+1	4546396..4546845	-	149	83647106	-	HCH_04412	-	hypothetical protein
4194	 62.43	+1	4546512..4546865	-	117	83647107	-	HCH_04413	-	hypothetical protein
4195	 60.63	+1	4546894..4547688	-	264	83647108	-	HCH_04414	-	MoxR-like ATPase
4196	 58.25	0	4547890..4548198	+	102	83647109	-	HCH_04415	-	cytochrome c553
4197	 58.21	0	4548323..4550107	+	594	83647110	-	HCH_04416	-	cytochrome c, mono- and diheme variants
4198	 59.14	+1	4550162..4550533	+	123	83647111	-	HCH_04417	-	cytochrome c, mono- and diheme variants
4199	 57.69	0	4550530..4551777	+	415	83647112	-	HCH_04418	-	hypothetical protein
4200	 58.38	0	4551774..4552280	+	168	83647113	-	HCH_04419	-	transcriptional regulator
4201	 58.70	0	4552308..4552859	+	183	83647114	-	HCH_04420	-	transcriptional regulator
4202	 58.43	0	4552841..4553350	+	169	83647115	-	HCH_04421	-	transcriptional regulator
4203	 60.49	+1	4553325..4553858	+	177	83647116	-	HCH_04422	-	transcriptional regulator
4204	 60.33	+1	4553879..4555015	+	378	83647117	-	HCH_04423	-	Fe-S oxidoreductase
4205	 56.88	0	4555034..4556545	+	503	83647118	-	HCH_04424	-	cytochrome c, mono- and diheme variants
4206	 51.14	0	4556578..4557015	-	145	83647119	-	HCH_04425	-	hypothetical protein
4207	 52.46	0	4557286..4557651	+	121	83647120	-	HCH_04426	-	mannose-6-phosphate isomerase
4208	 55.37	0	4557710..4558594	+	294	83647121	-	HCH_04427	-	hypothetical protein
4209	 46.67	-1	4558617..4558976	-	119	83647122	-	HCH_04428	-	hypothetical protein
4210	 42.42	-1	4558912..4559043	+	43	83647123	-	HCH_04430	-	hypothetical protein
4211	 32.79	-2	4559006..4559374	-	122	83647124	-	HCH_04429	-	hypothetical protein
4212	 38.65	-2	4559424..4560194	-	256	83647125	-	HCH_04431	-	hypothetical protein
4213	 46.92	-1	4560424..4560813	-	129	83647126	-	HCH_04432	-	transposase
4214	 45.43	-1	4561320..4562030	-	236	83647127	-	HCH_04433	-	restriction endonuclease
4215	 41.41	-2	4562061..4562159	+	32	83647128	-	HCH_04434	-	hypothetical protein
4216	 52.53	0	4562221..4562871	-	216	83647129	-	HCH_04435	-	hypothetical protein
4217	 54.32	0	4562890..4563051	-	53	83647130	-	HCH_04436	-	hypothetical protein
4218	 57.74	0	4563048..4565477	-	809	83647131	fadE	HCH_04437	-	acyl-CoA dehydrogenase
4219	 55.43	0	4565798..4566589	+	263	83647132	-	HCH_04438	-	alpha/beta superfamily hydrolase/acyltransferase
4220	 56.05	0	4566678..4567883	-	401	83647133	-	HCH_04439	-	QXW lectin repeat-containing protein
4221	 50.83	0	4568511..4568750	+	79	83647134	-	HCH_04440	-	hypothetical protein
4222	 54.61	0	4568794..4570269	-	491	83647135	-	HCH_04441	-	QXW lectin repeat-containing protein
4223	 57.21	0	4570350..4571174	-	274	83647136	-	HCH_04442	-	hypothetical protein
4224	 57.78	0	4571535..4571669	-	44	83647137	-	HCH_04443	-	hypothetical protein
4225	 51.24	0	4572695..4573906	+	403	83647138	-	HCH_04444	-	signal transduction protein
4226	 42.71	-1	4573929..4574024	-	31	83647139	-	HCH_04445	-	hypothetical protein
4227	 52.62	0	4573996..4574778	+	260	83647140	-	HCH_04446	-	Mg-dependent DNase
4228	 56.53	0	4574825..4575199	-	124	83647141	-	HCH_04447	-	hypothetical protein
4229	 36.84	-2	4575237..4575350	-	37	83647142	-	HCH_04448	-	hypothetical protein
4230	 53.66	0	4575432..4577852	+	806	83647143	-	HCH_04449	-	signal transduction protein
4231	 56.18	0	4577979..4579160	+	393	83647144	ackA	HCH_04450	-	acetate kinase
4232	 57.17	0	4579211..4581358	+	715	83647145	pta	HCH_04451	-	phosphate acetyltransferase
4233	 54.90	0	4581407..4582825	-	472	83647146	engA	HCH_04452	-	GTP-binding protein EngA
4234	 53.59	0	4582899..4584053	-	384	83647147	-	HCH_04453	-	WD-40 repeat-containing protein
4235	 52.75	0	4584061..4584714	-	217	83647148	-	HCH_04454	-	hypothetical protein
4236	 53.18	0	4584752..4586026	-	424	83647149	hisS	HCH_04455	-	histidyl-tRNA synthetase
4237	 52.38	0	4586145..4587257	-	370	83647150	ispG	HCH_04456	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
4238	 55.09	0	4587270..4588262	-	330	83647151	-	HCH_04457	-	hypothetical protein
4239	 46.70	-1	4588264..4588809	-	181	83647152	-	HCH_04458	-	Tfp pilus assembly protein PilF
4240	 48.90	0	4589152..4590288	-	378	83647153	-	HCH_04459	-	Fe-S-cluster redox protein
4241	 52.45	0	4590359..4590787	-	142	83647154	ndk	HCH_04460	-	nucleoside diphosphate kinase
4242	 53.55	0	4591037..4592218	-	393	83647155	-	HCH_04461	-	cysteine sulfinate desulfinase/cysteine desulfurase
4243	 54.79	0	4592293..4592772	-	159	83647156	iscR	HCH_04462	-	iron-sulfur cluster assembly transcription factor IscR
4244	 54.72	0	4592851..4593612	-	253	83647157	cysE	HCH_04463	-	serine O-acetyltransferase
4245	 52.20	0	4593625..4594398	-	257	83647158	-	HCH_04464	-	rRNA methylase
4246	 51.25	0	4594617..4595414	+	265	83647159	-	HCH_04465	-	fructose-1 6-bisphosphatase
4247	 50.32	0	4595526..4596449	-	307	83647160	secF	HCH_04466	-	preprotein translocase subunit SecF
4248	 52.87	0	4596462..4598324	-	620	83647161	secD	HCH_04467	-	preprotein translocase subunit SecD
4249	 52.30	0	4598435..4598803	-	122	83647162	yajC	HCH_04468	-	preprotein translocase, YajC subunit
4250	 54.70	0	4598840..4599967	-	375	83647163	tgt	HCH_04469	-	queuine tRNA-ribosyltransferase
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.