IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4060	 58.32	0	4421830..4423506	+	558	83646973	-	HCH_04276	-	acyl CoA:acetate/3-ketoacid CoA transferase
4061	 59.80	+1	4423507..4425282	-	591	83646974	-	HCH_04277	-	thiamine pyrophosphate-requiring enzyme
4062	 53.21	0	4425612..4426094	+	160	83646975	-	HCH_04278	-	hypothetical protein
4063	 53.68	0	4426163..4426624	+	153	83646976	-	HCH_04279	-	hypothetical protein
4064	 55.52	0	4426652..4427710	+	352	83646977	-	HCH_04280	-	hypothetical protein
4065	 52.63	0	4427715..4429082	+	455	83646978	-	HCH_04281	-	hypothetical protein
4066	 58.42	0	4429095..4430210	+	371	83646979	-	HCH_04282	-	3-oxoacyl-(acyl-carrier-protein) synthase
4067	 47.92	0	4430207..4431049	+	280	83646980	-	HCH_04283	-	hypothetical protein
4068	 42.96	-1	4431104..4431685	+	193	83646981	-	HCH_04285	-	hypothetical protein
4069	 32.54	-2	4431656..4431781	-	41	83646982	-	HCH_04284	-	hypothetical protein
4070	 39.59	-2	4432271..4432861	+	196	83646983	-	HCH_04286	-	hypothetical protein
4071	 40.38	-2	4432871..4433452	+	193	83646984	-	HCH_04287	-	hypothetical protein
4072	 41.07	-2	4433459..4434040	+	193	83646985	-	HCH_04288	-	hypothetical protein
4073	 36.98	-2	4434027..4434629	+	200	83646986	-	HCH_04289	-	hypothetical protein
4074	 41.41	-2	4434636..4435217	+	193	83646987	-	HCH_04290	-	hypothetical protein
4075	 39.06	-2	4435221..4435814	+	197	83646988	-	HCH_04291	-	hypothetical protein
4076	 50.45	0	4435848..4436624	+	258	83646989	-	HCH_04292	-	hypothetical protein
4077	 51.69	0	4436771..4437598	-	275	83646990	-	HCH_04293	-	hypothetical protein
4078	 50.31	0	4438269..4438757	+	162	83646991	-	HCH_04294	-	hemolysin-coregulated protein (uncharacterized)
4079	 50.18	0	4438922..4439200	-	92	83646992	-	HCH_04295	-	hypothetical protein
4080	 51.65	0	4439169..4439894	-	241	83646993	-	HCH_04296	-	Serine/threonine protein phosphatase
4081	 53.25	0	4439965..4440657	-	230	83646994	-	HCH_04297	-	hypothetical protein
4082	 51.98	0	4440744..4444202	-	1152	83646995	-	HCH_04298	-	hypothetical protein
4083	 57.26	0	4444288..4445169	-	293	83646996	-	HCH_04299	-	hypothetical protein
4084	 52.69	0	4445274..4446611	-	445	83646997	-	HCH_04300	-	hypothetical protein
4085	 49.58	0	4446626..4447105	-	159	83646998	-	HCH_04301	-	hypothetical protein
4086	 54.32	0	4447332..4449218	-	628	83646999	-	HCH_04302	-	FHA domain-containing protein
4087	 52.83	0	4449681..4450439	+	252	83647000	-	HCH_04303	-	FOG: CheY-like receiver
4088	 45.53	-1	4450662..4450784	-	40	83647001	-	HCH_04304	-	hypothetical protein
4089	 51.35	0	4450774..4452399	+	541	83647002	-	HCH_04305	-	FOG: CheY-like receiver
4090	 51.01	0	4452406..4453095	+	229	83647003	-	HCH_04306	-	Signal transduction histidine kinase
4091	 54.17	0	4453142..4453909	-	255	83647004	-	HCH_04307	-	metal-binding protein containing
4092	 56.94	0	4454266..4456989	+	907	83647005	-	HCH_04308	-	transcriptional regulator MalT
4093	 57.59	0	4457187..4458530	+	447	83647006	-	HCH_04309	-	glycosidase
4094	 46.90	-1	4458703..4458960	+	85	83647007	grxA	HCH_04310	-	glutaredoxin 1
4095	 49.87	0	4459060..4460541	-	493	83647008	-	HCH_04311	-	Outer membrane protein and related peptidoglycan-associated (lipo)protein
4096	 52.19	0	4460693..4461970	-	425	83647009	-	HCH_04312	-	uncharacterized NAD(FAD)-dependent dehydrogenase
4097	 53.06	0	4462130..4462570	-	146	83647010	-	HCH_04313	-	hypothetical protein
4098	 46.10	-1	4462919..4463341	-	140	83647011	-	HCH_04314	-	transcriptional regulator
4099	 47.67	-1	4463450..4463728	+	92	83647012	-	HCH_04315	-	Cro-like transcriptional regulator
4100	 45.61	-1	4463750..4463977	+	75	83647013	-	HCH_04316	-	hypothetical protein
4101	 52.70	0	4464063..4466675	-	870	83647014	-	HCH_04317	-	PPE repeat-containing protein
4102	 53.75	0	4466756..4467328	-	190	83647015	-	HCH_04318	-	hypothetical protein
4103	 56.10	0	4467659..4469059	-	466	83647016	-	HCH_04319	-	Na+-driven multidrug efflux pump
4104	 54.65	0	4469299..4470255	+	318	83647017	-	HCH_04321	-	transcriptional regulator
4105	 54.72	0	4470361..4471431	+	356	83647018	dinP	HCH_04322	-	DNA polymerase IV
4106	 42.22	-1	4471437..4471976	-	179	83647019	-	HCH_04323	-	hypothetical protein
4107	 52.27	0	4472765..4473403	-	212	83647020	-	HCH_04324	-	hypothetical protein
4108	 55.64	0	4473577..4475226	-	549	83647021	-	HCH_04325	-	methyl-accepting chemotaxis protein
4109	 51.79	0	4475343..4475705	-	120	83647022	-	HCH_04326	-	hypothetical protein
4110	 55.41	0	4475756..4476697	-	313	83647023	-	HCH_04327	-	hypothetical protein
4111	 52.52	0	4476694..4477704	-	336	83647024	-	HCH_04328	-	hypothetical protein
4112	 51.84	0	4477897..4478712	+	271	83647025	-	HCH_04329	-	amino acid ABC transporter periplasmic protein
4113	 54.75	0	4478714..4479577	+	287	83647026	-	HCH_04330	-	amino acid ABC transporter periplasmic protein
4114	 53.17	0	4479574..4480803	-	409	83647027	-	HCH_04331	-	hypothetical protein
4115	 54.14	0	4480943..4481341	-	132	83647028	-	HCH_04332	-	hypothetical protein
4116	 56.57	0	4481362..4482480	-	372	83647029	-	HCH_04333	-	alpha/beta fold family hydrolase
4117	 54.99	0	4482543..4483835	-	430	83647030	-	HCH_04334	-	Signal transduction histidine kinase
4118	 44.89	-1	4484080..4484676	+	198	83647031	-	HCH_04335	-	hypothetical protein
4119	 45.45	-1	4484853..4484984	-	43	83647032	-	HCH_04336	-	hypothetical protein
4120	 54.26	0	4485300..4485944	+	214	83647033	-	HCH_04337	-	hypothetical protein
4121	 58.78	0	4485982..4486653	-	223	83647034	-	HCH_04338	-	response regulator
4122	 54.39	0	4486634..4487521	-	295	83647035	-	HCH_04339	-	sterol desaturase
4123	 50.18	0	4487599..4488156	-	185	83647036	-	HCH_04340	-	hypothetical protein
4124	 59.85	+1	4488199..4488741	-	180	83647037	-	HCH_04341	-	hypothetical protein
4125	 56.63	0	4488747..4489334	-	195	83647038	-	HCH_04342	-	hypothetical protein
4126	 56.22	0	4489356..4491068	-	570	83647039	-	HCH_04343	-	hypothetical protein
4127	 54.52	0	4491065..4491739	-	224	83647040	-	HCH_04344	-	hypothetical protein
4128	 53.29	0	4491860..4492345	-	161	83647041	-	HCH_04345	-	histone acetyltransferase HPA2-like acetyltransferase
4129	 42.42	-1	4492329..4492427	-	32	83647042	-	HCH_04346	-	hypothetical protein
4130	 55.83	0	4492705..4494540	+	611	83647043	-	HCH_04347	-	membrane protein related to metalloendopeptidase
4131	 54.45	0	4494637..4495299	-	220	83647044	-	HCH_04348	-	O-methyltransferase
4132	 57.56	0	4495479..4496939	+	486	83647045	-	HCH_04349	-	K+ transport flavoprotein
4133	 60.14	+1	4496946..4497926	-	326	83647046	-	HCH_04350	-	NADPH:quinone reductase and related Zn-dependent oxidoreductase
4134	 47.46	-1	4497979..4498155	-	58	83647047	-	HCH_04351	-	hypothetical protein
4135	 47.10	-1	4498125..4498262	-	45	83647048	-	HCH_04352	-	hypothetical protein
4136	 55.84	0	4498518..4499219	+	233	83647049	-	HCH_04353	-	response regulator
4137	 59.58	+1	4499228..4501189	+	653	83647050	-	HCH_04354	-	Signal transduction histidine kinase
4138	 58.97	0	4501305..4502330	-	341	83647051	-	HCH_04355	-	translation initiation factor 2B subunit
4139	 59.63	+1	4502497..4503831	+	444	83647052	-	HCH_04356	-	N-ethylammeline chlorohydrolase
4140	 59.14	+1	4503903..4504619	+	238	83647053	ubiG1	HCH_04357	-	3-demethylubiquinone-9 3-methyltransferase
4141	 60.79	+1	4504619..4505299	+	226	83647054	-	HCH_04358	-	phosphatase
4142	 57.58	0	4505659..4506120	+	153	83647055	-	HCH_04359	-	short-chain alcohol dehydrogenase-like protein
4143	 57.49	0	4506183..4506629	+	148	83647056	-	HCH_04360	-	hypothetical protein
4144	 61.00	+1	4506644..4507897	-	417	83647057	-	HCH_04361	-	cytochrome c biogenesis factor
4145	 57.20	0	4507910..4508395	-	161	83647058	ccmH	HCH_04362	-	CcmH family cytochrome c biogenesis protein
4146	 55.32	0	4508392..4508955	-	187	83647059	ccmG	HCH_04363	-	cytochrome c-type biogenesis protein CcmG
4147	 57.91	0	4508955..4510976	-	673	83647060	ccmF	HCH_04364	-	cytochrome c-type biogenesis protein CcmF
4148	 58.67	0	4510988..4511437	-	149	83647061	ccmE	HCH_04365	-	cytochrome c-type biogenesis protein CcmE
4149	 52.78	0	4511434..4511613	-	59	83647062	-	HCH_04366	-	Heme exporter protein D
4150	 54.81	0	4511610..4512368	-	252	83647063	-	HCH_04367	-	ABC-type transport system involved in cytochrome c biogenesis, permease component
4151	 60.19	+1	4512457..4513089	-	210	83647064	ccmB	HCH_04368	-	heme exporter protein CcmB
4152	 58.18	0	4513140..4513775	-	211	83647065	ccmA	HCH_04369	-	cytochrome c biogenesis protein CcmA
4153	 59.97	+1	4514031..4515419	+	462	83647066	-	HCH_04370	-	hypothetical protein
4154	 55.56	0	4515416..4515766	+	116	83647067	-	HCH_04371	-	flagellar protein FhlB cytoplasmic domain-containing protein
4155	 52.04	0	4516028..4516321	+	97	83647068	-	HCH_04373	-	hypothetical protein
4156	 53.77	0	4516559..4517062	+	167	83647069	-	HCH_04374	-	DNA-binding ferritin-like protein
4157	 47.62	-1	4517271..4517375	+	34	83647070	-	HCH_04375	-	hypothetical protein
4158	 53.57	0	4517431..4518354	+	307	83647071	-	HCH_04376	-	small-conductance mechanosensitive channel
4159	 42.56	-1	4518420..4518755	-	111	83647072	-	HCH_04377	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.