IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3962	 58.87	0	4318304..4318765	+	153	83646875	-	HCH_04178	-	hypothetical protein
3963	 65.94	+2	4318759..4319589	+	276	83646876	-	HCH_04179	-	permease
3964	 55.60	0	4319713..4321746	-	677	83646877	-	HCH_04180	-	Zinc metalloprotease (elastase)
3965	 56.20	0	4321946..4322566	-	206	83646878	-	HCH_04181	-	putative intracellular protease/amidase
3966	 57.25	0	4322777..4323742	+	321	83646879	-	HCH_04182	-	transcriptional regulator
3967	 60.75	+1	4323765..4324862	-	365	83646880	draG	HCH_04183	-	ADP-ribosylglycohydrolase
3968	 54.99	0	4325030..4325860	+	276	83646881	-	HCH_04184	-	hypothetical protein
3969	 49.85	0	4325905..4326873	+	322	83646882	-	HCH_04185	-	hypothetical protein
3970	 50.65	0	4326970..4328505	+	511	83646883	-	HCH_04186	-	hypothetical protein
3971	 52.13	0	4328541..4329290	-	249	83646884	-	HCH_04187	-	hypothetical protein
3972	 53.42	0	4329287..4330486	-	399	83646885	-	HCH_04188	-	hypothetical protein
3973	 53.17	0	4330582..4332270	+	562	83646886	-	HCH_04189	-	outer membrane protein domain-containing protein
3974	 52.22	0	4332346..4333584	-	412	83646887	-	HCH_04190	-	hypothetical protein
3975	 57.00	0	4333756..4334748	-	330	83646888	-	HCH_04191	-	putative NADP-dependent oxidoreductase
3976	 55.37	0	4334879..4335781	+	300	83646889	-	HCH_04192	-	transcriptional regulator
3977	 56.61	0	4335871..4337481	+	536	83646890	-	HCH_04193	-	glycerol-3-phosphate dehydrogenase
3978	 55.53	0	4337582..4338802	+	406	83646891	-	HCH_04194	-	acyltransferase
3979	 50.00	0	4338915..4339058	+	47	83646892	-	HCH_04195	-	hypothetical protein
3980	 57.07	0	4339048..4339797	+	249	83646893	-	HCH_04196	-	beta-lactamase superfamily hydrolase
3981	 50.93	0	4339883..4339990	-	35	83646894	-	HCH_04197	-	hypothetical protein
3982	 56.97	0	4340132..4340977	+	281	83646895	-	HCH_04198	-	hypothetical protein
3983	 57.62	0	4340974..4342377	+	467	83646896	-	HCH_04199	-	hypothetical protein
3984	 54.13	0	4342481..4342807	+	108	83646897	-	HCH_04201	-	hypothetical protein
3985	 48.43	0	4342690..4342848	-	52	83646898	-	HCH_04200	-	hypothetical protein
3986	 51.26	0	4342829..4343425	-	198	83646899	-	HCH_04202	-	hypothetical protein
3987	 52.11	0	4343554..4344027	+	157	83646900	-	HCH_04203	-	hypothetical protein
3988	 56.99	0	4344035..4345780	-	581	83646901	-	HCH_04204	-	ABC-type sugar transport system, periplasmic component
3989	 51.11	0	4345851..4345940	+	29	83646902	-	HCH_04205	-	hypothetical protein
3990	 51.11	0	4345992..4346531	+	179	83646903	-	HCH_04206	-	acetyltransferase
3991	 57.32	0	4346575..4347366	-	263	83646904	-	HCH_04207	-	hypothetical protein
3992	 50.93	0	4347287..4347394	+	35	83646905	-	HCH_04208	-	hypothetical protein
3993	 57.07	0	4347405..4348019	-	204	83646906	-	HCH_04209	-	putative threonine efflux protein
3994	 54.07	0	4348184..4348858	-	224	83646907	-	HCH_04210	-	hypothetical protein
3995	 57.04	0	4348881..4349981	-	366	83646908	-	HCH_04211	-	hypothetical protein
3996	 57.02	0	4349995..4351083	-	362	83646909	-	HCH_04212	-	hypothetical protein
3997	 58.98	0	4351228..4351995	-	255	83646910	-	HCH_04213	-	AraC-type DNA-binding domain-containing protein
3998	 57.36	0	4352121..4352378	+	85	83646911	-	HCH_04214	-	preprotein translocase subunit SecD
3999	 55.10	0	4352455..4354296	-	613	83646912	-	HCH_04215	-	hypothetical protein
4000	 56.08	0	4354421..4355629	-	402	83646913	-	HCH_04216	-	hypothetical protein
4001	 52.40	0	4355673..4356338	-	221	83646914	-	HCH_04217	-	SAM-dependent methyltransferase
4002	 44.07	-1	4356343..4356519	+	58	83646915	-	HCH_04218	-	hypothetical protein
4003	 57.17	0	4356865..4357422	+	185	83646916	-	HCH_04219	-	hypothetical protein
4004	 52.02	0	4357471..4358112	-	213	83646917	-	HCH_04220	-	glutaredoxin-like protein
4005	 51.80	0	4358176..4358646	-	156	83646918	-	HCH_04221	-	hypothetical protein
4006	 57.31	0	4358896..4360092	+	398	83646919	-	HCH_04222	-	major facilitator superfamily permease
4007	 59.08	+1	4360278..4360712	+	144	83646920	-	HCH_04223	-	hypothetical protein
4008	 55.22	0	4360869..4362170	+	433	83646921	-	HCH_04224	-	Signal transduction histidine kinase
4009	 51.32	0	4362181..4362369	-	62	83646922	-	HCH_04225	-	hypothetical protein
4010	 57.61	0	4362435..4362677	-	80	83646923	-	HCH_04226	-	hypothetical protein
4011	 43.50	-1	4362985..4363800	-	271	83646924	-	HCH_04227	-	hypothetical protein
4012	 42.54	-1	4364042..4364932	-	296	83646925	-	HCH_04228	-	hypothetical protein
4013	 40.90	-2	4366174..4366926	-	250	83646926	-	HCH_04229	-	hypothetical protein
4014	 42.31	-1	4367150..4368040	-	296	83646927	-	HCH_04230	-	hypothetical protein
4015	 42.79	-1	4368071..4369360	-	429	83646928	-	HCH_04231	-	hypothetical protein
4016	 40.25	-2	4369755..4369913	-	52	83646929	-	HCH_04232	-	hypothetical protein
4017	 56.98	0	4370207..4371610	+	467	83646930	-	HCH_04233	-	sigma 54-dependent transcriptional activator
4018	 56.00	0	4371614..4372588	-	324	83646931	-	HCH_04234	-	hypothetical protein
4019	 48.15	0	4372604..4372711	-	35	83646932	-	HCH_04235	-	hypothetical protein
4020	 52.76	0	4372938..4373390	+	150	83646933	-	HCH_04236	-	FOG: CheY-like receiver
4021	 54.43	0	4373396..4375111	+	571	83646934	-	HCH_04237	-	signal transduction protein
4022	 53.28	0	4375157..4377196	+	679	83646935	-	HCH_04238	-	bacteriophytochrome
4023	 57.36	0	4377357..4378979	+	540	83646936	-	HCH_04239	-	acyl esterase
4024	 54.90	0	4379197..4381770	+	857	83646937	-	HCH_04240	-	outer membrane protein domain-containing protein
4025	 54.36	0	4381935..4384559	+	874	83646938	-	HCH_04241	-	Signal transduction histidine kinase
4026	 53.86	0	4384561..4386051	-	496	83646939	-	HCH_04242	-	Serine/threonine protein kinase
4027	 43.33	-1	4386092..4386241	-	49	83646940	-	HCH_04243	-	hypothetical protein
4028	 54.87	0	4386334..4388241	-	635	83646941	-	HCH_04244	-	TPR repeat-containing protein
4029	 52.97	0	4388448..4389425	-	325	83646942	-	HCH_04245	-	hypothetical protein
4030	 54.69	0	4389751..4391028	+	425	83646943	-	HCH_04246	-	hypothetical protein
4031	 50.00	0	4391108..4391641	+	177	83646944	-	HCH_04247	-	hypothetical protein
4032	 55.02	0	4391641..4393134	+	497	83646945	-	HCH_04248	-	hypothetical protein
4033	 53.61	0	4393264..4394772	+	502	83646946	-	HCH_04249	-	hypothetical protein
4034	 54.67	0	4394782..4395273	+	163	83646947	-	HCH_04250	-	hypothetical protein
4035	 55.08	0	4395273..4397102	+	609	83646948	-	HCH_04251	-	hypothetical protein
4036	 56.33	0	4397066..4398187	+	373	83646949	-	HCH_04252	-	hypothetical protein
4037	 57.32	0	4398184..4400943	+	919	83646950	-	HCH_04253	-	ATPase with chaperone activity, ATP-binding subunit
4038	 52.85	0	4400969..4401670	+	233	83646951	-	HCH_04254	-	transposase
4039	 59.66	+1	4401707..4402120	+	137	83646952	-	HCH_04255	-	lactoylglutathione lyase
4040	 54.52	0	4402227..4403156	-	309	83646953	-	HCH_04256	-	transcriptional regulator
4041	 55.89	0	4403275..4403571	+	98	83646954	-	HCH_04257	-	hypothetical protein
4042	 52.21	0	4403616..4403864	+	82	83646955	-	HCH_04258	-	hypothetical protein
4043	 54.52	0	4403898..4404284	+	128	83646956	-	HCH_04259	-	YjgF family translation initiation inhibitor
4044	 56.42	0	4404317..4405390	-	357	83646957	lipH	HCH_04260	-	lipase chaperone
4045	 57.39	0	4405524..4406504	-	326	83646958	-	HCH_04261	-	acetyltransferase and hydrolase with the alpha/beta hydrolase fold
4046	 58.70	0	4406715..4407266	-	183	83646959	-	HCH_04262	-	hypothetical protein
4047	 57.42	0	4407332..4407904	-	190	83646960	-	HCH_04263	-	hypothetical protein
4048	 56.20	0	4408060..4408470	-	136	83646961	-	HCH_04264	-	FOG: CheY-like receiver
4049	 56.05	0	4408141..4408611	+	156	83646962	-	HCH_04266	-	hypothetical protein
4050	 56.28	0	4408542..4408907	-	121	83646963	-	HCH_04265	-	FOG: CheY-like receiver
4051	 55.74	0	4408918..4411296	-	792	83646964	-	HCH_04267	-	Signal transduction histidine kinase
4052	 51.75	0	4411298..4411840	-	180	83646965	-	HCH_04268	-	hypothetical protein
4053	 55.39	0	4411844..4413697	-	617	83646966	-	HCH_04269	-	Outer membrane receptor for ferrienterochelin and colicins
4054	 54.09	0	4413915..4415624	+	569	83646967	-	HCH_04270	-	FOG EAL domain-containing protein
4055	 55.87	0	4415779..4416417	-	212	83646968	-	HCH_04271	-	hypothetical protein
4056	 57.34	0	4416711..4418126	+	471	83646969	-	HCH_04272	-	sigma 54-dependent transcriptional activator
4057	 57.26	0	4418489..4419562	+	357	83646970	-	HCH_04273	-	TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
4058	 54.08	0	4419755..4420453	+	232	83646971	-	HCH_04274	-	TRAP-type mannitol/chloroaromatic compound transport system, small permease component
4059	 59.53	+1	4420458..4421816	+	452	83646972	-	HCH_04275	-	TRAP-type mannitol/chloroaromatic compound transport system, large permease component
4060	 58.32	0	4421830..4423506	+	558	83646973	-	HCH_04276	-	acyl CoA:acetate/3-ketoacid CoA transferase
4061	 59.80	+1	4423507..4425282	-	591	83646974	-	HCH_04277	-	thiamine pyrophosphate-requiring enzyme
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.