IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
350	 55.66	0	379489..380451	+	320	83643263	-	HCH_00361	-	uncharacterized low-complexity protein
351	 58.47	0	380549..381463	+	304	83643264	-	HCH_00362	-	hypothetical protein
352	 54.38	0	381489..382025	-	178	83643265	-	HCH_00363	-	restriction endonuclease
353	 47.44	-1	382129..382284	+	51	83643266	-	HCH_00364	-	hypothetical protein
354	 53.46	0	382347..383141	+	264	83643267	-	HCH_00365	-	hypothetical protein
355	 34.41	-2	383125..383310	+	61	83643268	-	HCH_00366	-	hypothetical protein
356	 36.86	-2	383596..384984	+	462	83643269	-	HCH_00368	-	response regulator
357	 46.83	-1	385262..385387	-	41	83643270	-	HCH_00369	-	hypothetical protein
358	 58.05	0	385309..385575	-	88	83643271	-	HCH_00370	-	hypothetical protein
359	 29.97	-2	385752..386078	+	108	83643272	-	HCH_00371	-	hypothetical protein
360	 28.12	-2	386005..386100	+	31	83643273	-	HCH_00372	-	hypothetical protein
361	 62.34	+1	386106..387191	-	361	83643274	-	HCH_00373	-	hypothetical protein
362	 59.38	+1	387167..387880	-	237	83643275	-	HCH_00374	-	hypothetical protein
363	 61.11	+1	387877..388398	-	173	83643276	-	HCH_00375	-	nucleoid DNA-binding protein
364	 64.67	+1	388395..389294	-	299	83643277	-	HCH_00376	-	phage protein
365	 64.04	+1	389294..389635	-	113	83643278	-	HCH_00377	-	hypothetical protein
366	 61.65	+1	389652..391466	-	604	83643279	-	HCH_00378	-	hypothetical protein
367	 63.15	+1	391480..392076	-	198	83643280	-	HCH_00379	-	phage protein
368	 61.79	+1	392073..393242	-	389	83643281	-	HCH_00380	-	uncharacterized phage Mu protein gp47-like protein
369	 56.92	0	393239..393556	-	105	83643282	-	HCH_00381	-	phage protein
370	 64.99	+2	393560..395584	-	674	83643283	-	HCH_00382	-	phage protein
371	 60.00	+1	395768..396052	-	94	83643284	-	HCH_00383	-	phage protein
372	 58.87	0	396024..396254	-	76	83643285	-	HCH_00384	-	hypothetical protein
373	 61.25	+1	396258..396737	-	159	83643286	-	HCH_00385	-	hypothetical protein
374	 59.52	+1	396734..397321	-	195	83643287	-	HCH_00386	-	hypothetical protein
375	 63.71	+1	397318..397554	-	78	83643288	-	HCH_00387	-	DnaK suppressor protein
376	 59.21	+1	397558..398013	-	151	83643289	-	HCH_00388	-	phage protein
377	 62.23	+1	398032..399135	-	367	83643290	-	HCH_00389	-	phage protein
378	 64.71	+2	399138..399800	-	220	83643291	-	HCH_00390	-	phage protein
379	 66.05	+2	399775..400263	-	162	83643292	-	HCH_00391	-	hypothetical protein
380	 61.72	+1	400263..400727	-	154	83643293	-	HCH_00392	-	phage head completeion protein
381	 61.97	+1	400827..401528	-	233	83643294	-	HCH_00393	-	phage small terminate subunit
382	 59.54	+1	401532..402569	-	345	83643295	-	HCH_00394	-	P2 family phage major capsid protein
383	 60.78	+1	402595..403410	-	271	83643296	-	HCH_00395	-	flagellar biosynthesis/type III secretory pathway protein
384	 56.99	0	403570..405315	+	581	83643297	-	HCH_00396	-	Mu-like prophage FluMu protein gp28
385	 52.99	0	405330..406316	+	328	83643298	-	HCH_00397	-	PBSX family phage portal protein
386	 49.24	0	406381..406644	+	87	83643299	-	HCH_00398	-	hypothetical protein
387	 42.20	-1	407179..407979	-	266	83643300	-	HCH_00399	-	hypothetical protein
388	 50.07	0	407973..409346	-	457	83643301	-	HCH_00400	-	hypothetical protein
389	 52.85	0	409542..410120	-	192	83643302	-	HCH_00401	-	putative exonuclease
390	 52.91	0	410185..410373	-	62	83643303	-	HCH_00402	-	hypothetical protein
391	 58.56	0	410521..411075	-	184	83643304	-	HCH_00403	-	hypothetical protein
392	 53.71	0	411533..414187	-	884	83643305	-	HCH_00404	-	hypothetical protein
393	 43.03	-1	414977..415987	+	336	83643306	-	HCH_00405	-	integrase
394	 56.04	0	416063..417172	+	369	83643307	-	HCH_00406	-	hypothetical protein
395	 56.80	0	417263..418093	+	276	83643308	-	HCH_00407	-	hypothetical protein
396	 57.86	0	418099..418518	+	139	83643309	-	HCH_00408	-	protein chain release factor B
397	 58.48	0	418598..420514	-	638	83643310	-	HCH_00409	-	5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
398	 53.23	0	420648..421436	-	262	83643311	-	HCH_00410	-	amino acid ABC transporter periplasmic protein
399	 55.11	0	421856..422227	+	123	83643312	-	HCH_00412	-	hypothetical protein
400	 52.87	0	422312..422782	+	156	83643313	-	HCH_00413	-	hypothetical protein
401	 62.48	+1	422825..423325	+	166	83643314	-	HCH_00414	-	protein-tyrosine phosphatase
402	 55.11	0	423541..424665	+	374	83643315	-	HCH_00415	-	TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
403	 54.58	0	424826..425371	+	181	83643316	-	HCH_00416	-	TRAP-type mannitol/chloroaromatic compound transport system, small permease component
404	 58.20	0	425368..426654	+	428	83643317	-	HCH_00417	-	TRAP-type mannitol/chloroaromatic compound transport system, large permease component
405	 55.33	0	426716..428056	+	446	83643318	-	HCH_00418	-	Signal transduction histidine kinase
406	 54.49	0	428067..428690	+	207	83643319	-	HCH_00419	-	response regulator
407	 57.20	0	428738..429223	+	161	83643320	-	HCH_00420	-	cell wall-associated hydrolase (invasion-associated protein)
408	 50.00	0	429326..429661	+	111	83643321	-	HCH_00421	-	protein tyrosine phosphatase
409	 49.85	0	429741..430067	+	108	83643322	-	HCH_00422	-	hypothetical protein
410	 56.00	0	430217..431032	+	271	83643323	-	HCH_00423	-	hypothetical protein
411	 56.25	0	431729..432352	+	207	83643324	-	HCH_00424	-	putative threonine efflux protein
412	 52.22	0	432365..432883	+	172	83643325	-	HCH_00425	-	alkylated DNA repair protein
413	 53.90	0	432895..433599	+	234	83643326	-	HCH_00426	-	uncharacterized Fe-S protein
414	 56.41	0	433740..434363	+	207	83643327	-	HCH_00427	-	hypothetical protein
415	 49.53	0	434320..434850	+	176	83643328	-	HCH_00428	-	hypothetical protein
416	 61.62	+1	434908..439248	-	1446	83643329	-	HCH_00429	-	cation transport ATPase
417	 56.03	0	439351..440046	-	231	83643330	-	HCH_00430	-	hypothetical protein
418	 57.97	0	440351..441799	-	482	83643331	pyk	HCH_00431	-	pyruvate kinase
419	 53.43	0	441825..442829	-	334	83643332	gap2	HCH_00432	-	glyceraldehyde-3-phosphate dehydrogenase, type I
420	 58.77	0	443052..444875	+	607	83643333	edd	HCH_00433	-	phosphogluconate dehydratase
421	 55.52	0	444868..445836	+	322	83643334	glk	HCH_00434	-	glucokinase
422	 59.44	+1	445836..446720	+	294	83643335	-	HCH_00435	-	oxidoreductase
423	 58.77	0	446753..447094	-	113	83643336	-	HCH_00436	-	hypothetical protein
424	 55.41	0	447079..447771	-	230	83643337	-	HCH_00437	-	aspartate racemase
425	 50.77	0	447904..448293	-	129	83643338	-	HCH_00438	-	hypothetical protein
426	 59.88	+1	448498..450618	-	706	83643339	malS	HCH_00439	-	periplasmic alpha-amylase precursor
427	 54.77	0	450877..452070	+	397	83643340	malE	HCH_00440	-	maltose ABC transporter periplasmic protein
428	 56.22	0	452211..453761	+	516	83643341	malF	HCH_00441	-	maltose transporter membrane protein
429	 58.47	0	453772..454662	+	296	83643342	malG	HCH_00442	-	maltose transporter permease
430	 53.17	0	454819..455307	+	162	83643343	-	HCH_00443	-	hypothetical protein
431	 48.75	0	455565..455843	+	92	83643344	-	HCH_00444	-	RNA-binding protein
432	 54.17	0	455897..456040	-	47	83643345	-	HCH_00445	-	hypothetical protein
433	 59.55	+1	456108..456641	-	177	83643346	-	HCH_00446	-	NTPase
434	 55.86	0	456780..457103	+	107	83643347	-	HCH_00447	-	DnaK suppressor protein
435	 54.28	0	457128..458354	-	408	83643348	-	HCH_00448	-	FOG: CheY-like receiver
436	 54.30	0	458559..459722	+	387	83643349	-	HCH_00449	-	methyl-accepting chemotaxis protein
437	 49.50	0	459798..460100	+	100	83643350	-	HCH_00450	-	anti-anti-sigma regulatory factor
438	 56.63	0	460130..461812	+	560	83643351	-	HCH_00451	-	Serine phosphatase RsbU, regulator of sigma subunit
439	 57.30	0	461840..462586	-	248	83643352	-	HCH_00452	-	uncharacterized flavoprotein
440	 55.94	0	462686..463459	-	257	83643353	-	HCH_00453	-	methyl-accepting chemotaxis protein
441	 54.27	0	463623..463985	+	120	83643354	-	HCH_00454	-	FOG: CheY-like receiver
442	 57.28	0	464014..466101	+	695	83643355	-	HCH_00455	-	chemotaxis protein histidine kinase-like kinase
443	 54.71	0	466085..466594	+	169	83643356	-	HCH_00456	-	chemotaxis signal transduction protein
444	 56.76	0	466640..468961	+	773	83643357	-	HCH_00457	-	methyl-accepting chemotaxis protein
445	 56.11	0	469054..471384	+	776	83643358	-	HCH_00458	-	methyl-accepting chemotaxis protein
446	 56.98	0	471384..471899	+	171	83643359	-	HCH_00459	-	chemotaxis signal transduction protein
447	 58.33	0	471896..472195	+	99	83643360	-	HCH_00460	-	hypothetical protein
448	 52.77	0	472209..473057	+	282	83643361	-	HCH_00461	-	methylase of chemotaxis methyl-accepting protein
449	 54.56	0	473059..473694	+	211	83643362	-	HCH_00462	-	chemoreceptor glutamine deamidase CheD
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.