IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3692	 58.08	0	4030353..4030550	-	65	83646605	-	HCH_03888	-	hypothetical protein
3693	 63.41	+1	4030547..4032664	-	705	83646606	-	HCH_03890	-	hypothetical protein
3694	 59.34	+1	4032668..4033786	-	372	83646607	-	HCH_03891	-	hypothetical protein
3695	 58.27	0	4033813..4035015	-	400	83646608	-	HCH_03892	-	hypothetical protein
3696	 58.63	0	4035037..4035621	-	194	83646609	-	HCH_03893	-	hypothetical protein
3697	 58.79	0	4035608..4036927	-	439	83646610	-	HCH_03894	-	subtilisin-like serine protease
3698	 47.92	0	4037377..4037520	-	47	83646611	-	HCH_03895	-	hypothetical protein
3699	 51.21	0	4037519..4037848	+	109	83646612	-	HCH_03896	-	hypothetical protein
3700	 39.45	-2	4038240..4039154	+	304	83646613	-	HCH_03899	-	hypothetical protein
3701	 37.16	-2	4039715..4040602	+	295	83646614	-	HCH_03900	-	ankyrin repeat-containing protein
3702	 52.20	0	4041138..4042070	-	310	83646615	-	HCH_03901	-	transcriptional regulator
3703	 53.93	0	4042172..4043011	+	279	83646616	-	HCH_03902	-	hypothetical protein
3704	 37.46	-2	4044058..4044978	+	306	83646617	-	HCH_03903	-	ankyrin repeat-containing protein
3705	 53.91	0	4045826..4052113	+	2095	83646618	-	HCH_03906	-	RTX toxins and related Ca2+-binding protein
3706	 39.60	-2	4052330..4052935	-	201	83646619	-	HCH_03907	-	hypothetical protein
3707	 39.10	-2	4053362..4054366	-	334	83646620	-	HCH_03908	-	hypothetical protein
3708	 48.31	0	4054694..4055047	-	117	83646621	-	HCH_03909	-	hypothetical protein
3709	 56.60	0	4055237..4055842	-	201	83646622	-	HCH_03910	-	putative threonine efflux protein
3710	 55.71	0	4055900..4056328	-	142	83646623	-	HCH_03911	-	hypothetical protein
3711	 59.44	+1	4056438..4057337	+	299	83646624	-	HCH_03912	-	transcriptional regulator
3712	 52.41	0	4057488..4058027	+	179	83646625	aroQ1	HCH_03913	-	chorismate mutase
3713	 55.43	0	4058090..4059949	-	619	83646626	-	HCH_03914	-	endoglucanase
3714	 52.05	0	4059864..4060034	-	56	83646627	-	HCH_03915	-	hypothetical protein
3715	 52.17	0	4060270..4060545	-	91	83646628	-	HCH_03916	-	hypothetical protein
3716	 50.47	0	4060669..4060989	-	106	83646629	-	HCH_03918	-	hypothetical protein
3717	 56.39	0	4061092..4062006	-	304	83646630	-	HCH_03919	-	endonuclease
3718	 54.79	0	4062030..4062290	+	86	83646631	-	HCH_03920	-	hypothetical protein
3719	 52.46	0	4062418..4063536	+	372	83646632	-	HCH_03921	-	hypothetical protein
3720	 56.50	0	4063702..4065954	+	750	83646633	-	HCH_03922	-	Outer membrane receptor protein, mostly Fe transport
3721	 58.54	0	4065969..4066916	+	315	83646634	-	HCH_03923	-	ABC-type uncharacterized transport system, periplasmic component
3722	 57.02	0	4066913..4068892	+	659	83646635	-	HCH_03924	-	Signal transduction histidine kinase
3723	 55.61	0	4068916..4070262	-	448	83646636	gor	HCH_03925	-	glutathione-disulfide reductase
3724	 53.75	0	4070321..4070947	-	208	83646637	-	HCH_03926	-	histone acetyltransferase HPA2-like acetyltransferase
3725	 50.00	0	4071201..4071308	-	35	83646638	-	HCH_03927	-	hypothetical protein
3726	 55.62	0	4071327..4071851	-	174	83646639	gspM	HCH_03928	-	Type II secretory pathway, component PulM
3727	 56.43	0	4071855..4073144	-	429	83646640	gspL	HCH_03929	-	Type II secretory pathway, component PulL
3728	 49.42	0	4073211..4074248	-	345	83646641	gspK	HCH_03930	-	Type II secretory pathway, component PulK
3729	 52.97	0	4074241..4075065	-	274	83646642	gspJ	HCH_03931	-	general secretion pathway protein J
3730	 53.14	0	4075065..4075478	-	137	83646643	gspI	HCH_03932	-	general secretion pathway protein I
3731	 47.93	0	4075462..4076016	-	184	83646644	gspH	HCH_03933	-	general secretion pathway protein H
3732	 50.89	0	4076062..4076511	-	149	83646645	gspG	HCH_03935	-	general secretion pathway protein G
3733	 55.01	0	4076553..4077779	-	408	83646646	gspF	HCH_03936	-	general secretion pathway protein F
3734	 52.86	0	4077864..4079420	-	518	83646647	gspE	HCH_03937	-	Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
3735	 56.28	0	4079728..4080603	+	291	83646648	-	HCH_03938	-	hypothetical protein
3736	 53.15	0	4080908..4081573	+	221	83646649	-	HCH_03939	-	periplasmic protein
3737	 49.65	0	4081626..4081766	-	46	83646650	-	HCH_03940	-	hypothetical protein
3738	 51.82	0	4081831..4082214	+	127	83646651	-	HCH_03942	-	transcriptional regulator
3739	 51.22	0	4082184..4082306	-	40	83646652	-	HCH_03941	-	hypothetical protein
3740	 58.80	0	4082308..4083477	+	389	83646653	-	HCH_03943	-	Acyl-CoA dehydrogenase
3741	 58.40	0	4083539..4085146	+	535	83646654	-	HCH_03944	-	Acetyl-CoA carboxylase, carboxyltransferase component (subunit alpha and beta)
3742	 59.85	+1	4085212..4086018	+	268	83646655	-	HCH_03945	-	enoyl-CoA hydratase/carnithine racemase
3743	 58.25	0	4086011..4088005	+	664	83646656	-	HCH_03946	-	Acetyl/propionyl-CoA carboxylase, alpha subunit
3744	 56.48	0	4088007..4088948	+	313	83646657	-	HCH_03947	-	isopropylmalate/homocitrate/citramalate synthases
3745	 56.11	0	4088968..4090956	+	662	83646658	-	HCH_03948	-	acetoacetyl-CoA synthetase
3746	 57.01	0	4091016..4091957	-	313	83646659	-	HCH_03949	-	electron transfer flavoprotein subunit alpha
3747	 54.00	0	4091959..4092708	-	249	83646660	-	HCH_03950	-	electron transfer flavoprotein subunit beta
3748	 44.74	-1	4093142..4093255	-	37	83646661	-	HCH_03952	-	hypothetical protein
3749	 56.12	0	4093338..4094996	+	552	83646662	-	HCH_03954	-	dehydrogenase
3750	 49.35	0	4094981..4095211	-	76	83646663	-	HCH_03953	-	hypothetical protein
3751	 48.25	0	4095554..4095667	+	37	83646664	-	HCH_03955	-	hypothetical protein
3752	 51.03	0	4096391..4098097	+	568	83646665	-	HCH_03956	-	retron-type reverse transcriptase
3753	 53.54	0	4098254..4099312	-	352	83646666	-	HCH_03957	-	hypothetical protein
3754	 56.63	0	4099593..4101356	-	587	83646667	-	HCH_03958	-	retron-type reverse transcriptase
3755	 57.04	0	4101428..4101562	+	44	83646668	-	HCH_03959	-	hypothetical protein
3756	 55.73	0	4101810..4103483	-	557	83646669	-	HCH_03960	-	SWIM zinc finger domain-containing protein
3757	 58.16	0	4103494..4106724	-	1076	83646670	-	HCH_03961	-	DNA binding domain-containing protein
3758	 59.29	+1	4106935..4108236	-	433	83646671	-	HCH_03962	-	glycosyltransferase
3759	 60.88	+1	4108233..4110479	-	748	83646672	-	HCH_03963	-	hypothetical protein
3760	 58.56	0	4110467..4111243	-	258	83646673	-	HCH_03964	-	hypothetical protein
3761	 57.94	0	4110479..4111567	+	362	83646674	-	HCH_03965	-	hypothetical protein
3762	 55.34	0	4111591..4112199	-	202	83646675	-	HCH_03966	-	nucleotidyltransferase
3763	 56.53	0	4112353..4113033	-	226	83646676	-	HCH_03967	-	tRNA nucleotidyltransferase/poly(A) polymerase
3764	 45.74	-1	4112822..4113079	+	85	83646677	-	HCH_03968	-	hypothetical protein
3765	 50.35	0	4113083..4113223	+	46	83646678	-	HCH_03969	-	hypothetical protein
3766	 52.45	0	4113373..4113801	+	142	83646679	-	HCH_03970	-	protein required for attachment to host cells
3767	 50.54	0	4113840..4114391	-	183	83646680	-	HCH_03971	-	hypothetical protein
3768	 54.39	0	4114542..4114883	+	113	83646681	-	HCH_03972	-	hypothetical protein
3769	 56.94	0	4115031..4116479	-	482	83646682	-	HCH_03973	-	N-acetylglucosamine-binding protein A
3770	 40.40	-2	4116414..4116611	+	65	83646683	-	HCH_03974	-	hypothetical protein
3771	 53.17	0	4116652..4117503	-	283	83646684	-	HCH_03975	-	hypothetical protein
3772	 55.87	0	4116958..4117596	+	212	83646685	-	HCH_03976	-	hypothetical protein
3773	 59.50	+1	4117806..4118837	+	343	83646686	-	HCH_03977	-	nucleoside-diphosphate-sugar epimerase
3774	 59.35	+1	4118847..4119488	+	213	83646687	-	HCH_03978	-	hypothetical protein
3775	 56.96	0	4119567..4120040	+	157	83646688	-	HCH_03979	-	hypothetical protein
3776	 50.94	0	4120222..4120380	+	52	83646689	-	HCH_03980	-	hypothetical protein
3777	 55.59	0	4120480..4121409	+	309	83646690	-	HCH_03981	-	small-conductance mechanosensitive channel
3778	 55.97	0	4121424..4122386	-	320	83646691	-	HCH_03982	-	AraC-type DNA-binding domain-containing protein
3779	 58.61	0	4122618..4123610	+	330	83646692	-	HCH_03983	-	oxidoreductase (related to aryl-alcohol dehydrogenase)
3780	 52.21	0	4123831..4124259	+	142	83646693	-	HCH_03985	-	histone acetyltransferase HPA2-like acetyltransferase
3781	 51.50	0	4124340..4125104	+	254	83646694	-	HCH_03986	-	hypothetical protein
3782	 43.69	-1	4125633..4126472	+	279	83646695	-	HCH_03987	-	hypothetical protein
3783	 57.58	0	4126982..4128037	-	351	83646696	moaA	HCH_03988	-	molybdenum cofactor biosynthesis protein A
3784	 59.58	+1	4128034..4128414	-	126	83646697	-	HCH_03989	-	hypothetical protein
3785	 52.63	0	4128587..4129405	-	272	83646698	-	HCH_03990	-	transcriptional regulator
3786	 54.53	0	4129514..4130980	-	488	83646699	-	HCH_03992	-	Na+/alanine symporter
3787	 46.45	-1	4131653..4131934	-	93	83646700	-	HCH_03993	-	hypothetical protein
3788	 40.71	-2	4132028..4132366	-	112	83646701	-	HCH_03994	-	hypothetical protein
3789	 43.54	-1	4132430..4132870	-	146	83646702	-	HCH_03995	-	hypothetical protein
3790	 39.39	-2	4133046..4133177	-	43	83646703	-	HCH_03996	-	hypothetical protein
3791	 42.72	-1	4133338..4133742	-	134	83646704	-	HCH_03997	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.